data_6TP3
#
_model_server_result.job_id            UYDTNO3nWaG_WMhAMMZZ8Q 
_model_server_result.datetime_utc      '2024-11-06 03:19:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6tp3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":401}' 
#
_entry.id    6TP3 
#
_exptl.entry_id    6TP3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              450.921 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2~{S})-2-(6-chloranyl-7-methyl-1~{H}-benzimidazol-2-yl)-2-methyl-pyrrolidin-1-yl]-[5-methoxy-2-(1,2,3-triazol-2-yl)phenyl]methanone' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.55 
_cell.angle_gamma         90 
_cell.entry_id            6TP3 
_cell.length_a            61.223 
_cell.length_b            146.423 
_cell.length_c            73.6 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6TP3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M 1 1 
B,N,O,P,Q,R,S,T,U,V,W 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 95 A CYS 119 1_555 A SG CYS 178 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf2 B SG CYS 95 B CYS 119 1_555 B SG CYS 178 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
#
_chem_comp.formula           'C23 H23 Cl N6 O2' 
_chem_comp.formula_weight    450.921 
_chem_comp.id                NS2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2~{S})-2-(6-chloranyl-7-methyl-1~{H}-benzimidazol-2-yl)-2-methyl-pyrrolidin-1-yl]-[5-methoxy-2-(1,2,3-triazol-2-yl)phenyl]methanone' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N32 C31 NS2 doub 235 n y 
N32 N28 NS2 sing 236 n y 
C31 C30 NS2 sing 237 n y 
C05 C04 NS2 doub 238 n y 
C05 C06 NS2 sing 239 n y 
C04 C03 NS2 sing 240 n y 
C01 O02 NS2 sing 241 n n 
N28 C06 NS2 sing 242 n n 
N28 N29 NS2 sing 243 n y 
C06 C07 NS2 doub 244 n y 
C30 N29 NS2 doub 245 n y 
C03 O02 NS2 sing 246 n n 
C03 C08 NS2 doub 247 n y 
C21 C20 NS2 doub 248 n y 
C21 C22 NS2 sing 249 n y 
C20 C19 NS2 sing 250 n y 
CL1 C22 NS2 sing 251 n n 
C22 C23 NS2 doub 252 n y 
C08 C07 NS2 sing 253 n y 
C07 C09 NS2 sing 254 n n 
C19 N18 NS2 sing 255 n y 
C19 C24 NS2 doub 256 n y 
N18 C17 NS2 doub 257 n y 
C23 C24 NS2 sing 258 n y 
C23 C26 NS2 sing 259 n n 
C24 N25 NS2 sing 260 n y 
C09 O10 NS2 doub 261 n n 
C09 N11 NS2 sing 262 n n 
C16 C15 NS2 sing 263 n n 
C17 N25 NS2 sing 264 n y 
C17 C15 NS2 sing 265 n n 
N11 C15 NS2 sing 266 n n 
N11 C12 NS2 sing 267 n n 
C15 C14 NS2 sing 268 n n 
C12 C13 NS2 sing 269 n n 
C14 C13 NS2 sing 270 n n 
C01 H013 NS2 sing 271 n n 
C01 H011 NS2 sing 272 n n 
C01 H012 NS2 sing 273 n n 
C04 H041 NS2 sing 274 n n 
C05 H051 NS2 sing 275 n n 
C08 H081 NS2 sing 276 n n 
C12 H121 NS2 sing 277 n n 
C12 H122 NS2 sing 278 n n 
C13 H131 NS2 sing 279 n n 
C13 H132 NS2 sing 280 n n 
C14 H141 NS2 sing 281 n n 
C14 H142 NS2 sing 282 n n 
C16 H162 NS2 sing 283 n n 
C16 H161 NS2 sing 284 n n 
C16 H163 NS2 sing 285 n n 
C20 H201 NS2 sing 286 n n 
C21 H211 NS2 sing 287 n n 
C26 H261 NS2 sing 288 n n 
C26 H263 NS2 sing 289 n n 
C26 H262 NS2 sing 290 n n 
C30 H301 NS2 sing 291 n n 
C31 H311 NS2 sing 292 n n 
N25 H251 NS2 sing 293 n n 
#
_atom_sites.entry_id                     6TP3 
_atom_sites.fract_transf_matrix[1][1]    0.016334 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.0058 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00683 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014418 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NS2 A 1 401 401 NS2 UNL . 
D 3 SO4 A 1 402 1 SO4 SO4 . 
E 3 SO4 A 1 403 2 SO4 SO4 . 
F 4 PGW A 1 404 2 PGW PGW . 
G 5 SOG A 1 405 1 SOG SOG . 
H 5 SOG A 1 406 3 SOG SOG . 
I 5 SOG A 1 407 4 SOG SOG . 
J 5 SOG A 1 408 8 SOG SOG . 
K 5 SOG A 1 409 15 SOG SOG . 
L 5 SOG A 1 410 16 SOG SOG . 
M 5 SOG A 1 411 17 SOG SOG . 
N 2 NS2 B 1 401 401 NS2 UNL . 
O 3 SO4 B 1 402 3 SO4 SO4 . 
P 4 PGW B 1 403 1 PGW PGW . 
Q 5 SOG B 1 404 6 SOG SOG . 
R 5 SOG B 1 405 7 SOG SOG . 
S 5 SOG B 1 406 10 SOG SOG . 
T 5 SOG B 1 407 11 SOG SOG . 
U 5 SOG B 1 408 12 SOG SOG . 
V 5 SOG B 1 409 13 SOG SOG . 
W 5 SOG B 1 410 14 SOG SOG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 NS2 . . . N 2 -25.548 56.748 -1.775 1 105.81 ? C01 NS2 401 B 1 
HETATM 2 C C03 NS2 . . . N 2 -25.378 54.552 -2.771 1 81.05 ? C03 NS2 401 B 1 
HETATM 3 C C04 NS2 . . . N 2 -24.127 54.242 -2.225 1 83.8 ? C04 NS2 401 B 1 
HETATM 4 C C05 NS2 . . . N 2 -23.607 52.96 -2.542 1 89.37 ? C05 NS2 401 B 1 
HETATM 5 C C06 NS2 . . . N 2 -24.344 52.037 -3.351 1 82.93 ? C06 NS2 401 B 1 
HETATM 6 C C07 NS2 . . . N 2 -25.628 52.316 -3.838 1 74.43 ? C07 NS2 401 B 1 
HETATM 7 C C08 NS2 . . . N 2 -26.075 53.573 -3.492 1 61.7 ? C08 NS2 401 B 1 
HETATM 8 C C09 NS2 . . . N 2 -26.518 51.383 -4.63 1 79.99 ? C09 NS2 401 B 1 
HETATM 9 C C12 NS2 . . . N 2 -27.39 50.09 -6.718 1 65.29 ? C12 NS2 401 B 1 
HETATM 10 C C13 NS2 . . . N 2 -27.125 50.193 -8.214 1 65.04 ? C13 NS2 401 B 1 
HETATM 11 C C14 NS2 . . . N 2 -26.444 51.511 -8.355 1 71.11 ? C14 NS2 401 B 1 
HETATM 12 C C15 NS2 . . . N 2 -25.655 51.671 -7.078 1 74.22 ? C15 NS2 401 B 1 
HETATM 13 C C16 NS2 . . . N 2 -24.299 50.891 -7.217 1 74.99 ? C16 NS2 401 B 1 
HETATM 14 C C17 NS2 . . . N 2 -25.451 53.162 -6.82 1 78.36 ? C17 NS2 401 B 1 
HETATM 15 C C19 NS2 . . . N 2 -24.329 54.894 -6.072 1 82.87 ? C19 NS2 401 B 1 
HETATM 16 C C20 NS2 . . . N 2 -23.241 55.71 -5.7 1 83.76 ? C20 NS2 401 B 1 
HETATM 17 C C21 NS2 . . . N 2 -23.488 56.945 -5.327 1 76.31 ? C21 NS2 401 B 1 
HETATM 18 C C22 NS2 . . . N 2 -24.765 57.428 -5.432 1 77.78 ? C22 NS2 401 B 1 
HETATM 19 C C23 NS2 . . . N 2 -25.931 56.681 -5.772 1 77.97 ? C23 NS2 401 B 1 
HETATM 20 C C24 NS2 . . . N 2 -25.664 55.354 -6.149 1 78.53 ? C24 NS2 401 B 1 
HETATM 21 C C26 NS2 . . . N 2 -27.293 57.207 -5.815 1 83.65 ? C26 NS2 401 B 1 
HETATM 22 C C30 NS2 . . . N 2 -23.513 48.639 -4.029 1 92.15 ? C30 NS2 401 B 1 
HETATM 23 C C31 NS2 . . . N 2 -22.303 49.14 -3.429 1 100.41 ? C31 NS2 401 B 1 
HETATM 24 N N11 NS2 . . . N 2 -26.443 51.073 -6.031 1 73.75 ? N11 NS2 401 B 1 
HETATM 25 N N18 NS2 . . . N 2 -24.263 53.585 -6.435 1 83.13 ? N18 NS2 401 B 1 
HETATM 26 N N25 NS2 . . . N 2 -26.432 54.203 -6.532 1 76.5 ? N25 NS2 401 B 1 
HETATM 27 N N28 NS2 . . . N 2 -23.735 50.731 -3.536 1 89.2 ? N28 NS2 401 B 1 
HETATM 28 N N29 NS2 . . . N 2 -24.409 49.646 -4.071 1 89.89 ? N29 NS2 401 B 1 
HETATM 29 N N32 NS2 . . . N 2 -22.467 50.458 -3.12 1 95.51 ? N32 NS2 401 B 1 
HETATM 30 O O02 NS2 . . . N 2 -26.104 55.703 -2.496 1 95.32 ? O02 NS2 401 B 1 
HETATM 31 O O10 NS2 . . . N 2 -27.349 50.748 -3.983 1 87.72 ? O10 NS2 401 B 1 
HETATM 32 CL CL1 NS2 . . . N 2 -24.679 59.028 -4.893 1 81.27 ? CL1 NS2 401 B 1 
HETATM 33 H H013 NS2 . . . N 2 -25.749 57.537 -2.239 1 105.84 ? H013 NS2 401 B 1 
HETATM 34 H H011 NS2 . . . N 2 -24.621 56.741 -1.761 1 105.84 ? H011 NS2 401 B 1 
HETATM 35 H H012 NS2 . . . N 2 -25.928 56.868 -0.932 1 105.84 ? H012 NS2 401 B 1 
HETATM 36 H H041 NS2 . . . N 2 -23.666 54.873 -1.728 1 83.8 ? H041 NS2 401 B 1 
HETATM 37 H H051 NS2 . . . N 2 -22.764 52.783 -2.21 1 89.55 ? H051 NS2 401 B 1 
HETATM 38 H H081 NS2 . . . N 2 -26.934 53.805 -3.782 1 61.36 ? H081 NS2 401 B 1 
HETATM 39 H H121 NS2 . . . N 2 -28.306 50.211 -6.532 1 65.26 ? H121 NS2 401 B 1 
HETATM 40 H H122 NS2 . . . N 2 -27.248 49.195 -6.472 1 65.26 ? H122 NS2 401 B 1 
HETATM 41 H H131 NS2 . . . N 2 -27.903 50.132 -8.718 1 65.02 ? H131 NS2 401 B 1 
HETATM 42 H H132 NS2 . . . N 2 -26.61 49.489 -8.564 1 65.02 ? H132 NS2 401 B 1 
HETATM 43 H H141 NS2 . . . N 2 -25.891 51.547 -9.108 1 71.13 ? H141 NS2 401 B 1 
HETATM 44 H H142 NS2 . . . N 2 -27.078 52.197 -8.498 1 71.13 ? H142 NS2 401 B 1 
HETATM 45 H H162 NS2 . . . N 2 -23.777 50.903 -6.437 1 75 ? H162 NS2 401 B 1 
HETATM 46 H H161 NS2 . . . N 2 -23.756 51.216 -7.907 1 75 ? H161 NS2 401 B 1 
HETATM 47 H H163 NS2 . . . N 2 -24.432 49.974 -7.396 1 75 ? H163 NS2 401 B 1 
HETATM 48 H H201 NS2 . . . N 2 -22.403 55.377 -5.627 1 83.83 ? H201 NS2 401 B 1 
HETATM 49 H H211 NS2 . . . N 2 -22.781 57.501 -5.094 1 76.24 ? H211 NS2 401 B 1 
HETATM 50 H H261 NS2 . . . N 2 -27.501 57.766 -5.09 1 83.68 ? H261 NS2 401 B 1 
HETATM 51 H H263 NS2 . . . N 2 -27.951 56.546 -5.836 1 83.68 ? H263 NS2 401 B 1 
HETATM 52 H H262 NS2 . . . N 2 -27.41 57.738 -6.586 1 83.68 ? H262 NS2 401 B 1 
HETATM 53 H H301 NS2 . . . N 2 -23.692 47.785 -4.34 1 92.1 ? H301 NS2 401 B 1 
HETATM 54 H H311 NS2 . . . N 2 -21.519 48.679 -3.258 1 100.51 ? H311 NS2 401 B 1 
HETATM 55 H H251 NS2 . . . N 2 -27.283 54.192 -6.687 1 76.52 ? H251 NS2 401 B 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           76 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           55 
#