data_6TP3
#
_model_server_result.job_id            uVo68bbEll8q-rpeRrwhfg 
_model_server_result.datetime_utc      '2024-11-06 03:08:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6tp3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":403}' 
#
_entry.id    6TP3 
#
_exptl.entry_id    6TP3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              749.007 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.55 
_cell.angle_gamma         90 
_cell.entry_id            6TP3 
_cell.length_a            61.223 
_cell.length_b            146.423 
_cell.length_c            73.6 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6TP3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M 1 1 
B,N,O,P,Q,R,S,T,U,V,W 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 95 A CYS 119 1_555 A SG CYS 178 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf2 B SG CYS 95 B CYS 119 1_555 B SG CYS 178 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
#
_chem_comp.formula           'C40 H77 O10 P' 
_chem_comp.formula_weight    749.007 
_chem_comp.id                PGW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Palmitoyl-2-Oleoyl-sn-Glycero-3-[Phospho-(1-glycerol)];PHOSPHATIDYLGLYCEROL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAD C05 PGW sing 294 n n 
CAD HAD PGW sing 295 n n 
CAD HADA PGW sing 296 n n 
OAE CAD PGW sing 297 n n 
OAE HOAE PGW sing 298 n n 
OAF C05 PGW sing 299 n n 
OAF HOAF PGW sing 300 n n 
P O13 PGW sing 301 n n 
P O11 PGW sing 302 n n 
C01 O03 PGW sing 303 n n 
C01 C02 PGW sing 304 n n 
C01 H01 PGW sing 305 n n 
C01 H01A PGW sing 306 n n 
C1 C2 PGW sing 307 n n 
O01 C1 PGW sing 308 n n 
C02 O01 PGW sing 309 n n 
C02 H02 PGW sing 310 n n 
C2 C3 PGW sing 311 n n 
C2 H2 PGW sing 312 n n 
C2 H2A PGW sing 313 n n 
O02 C1 PGW doub 314 n n 
C03 C02 PGW sing 315 n n 
C03 H03 PGW sing 316 n n 
C03 H03A PGW sing 317 n n 
C3 C4 PGW sing 318 n n 
C3 H3 PGW sing 319 n n 
C3 H3A PGW sing 320 n n 
C04 C05 PGW sing 321 n n 
C04 O12 PGW sing 322 n n 
C04 H04 PGW sing 323 n n 
C04 H04A PGW sing 324 n n 
C4 C5 PGW sing 325 n n 
C4 H4 PGW sing 326 n n 
C4 H4A PGW sing 327 n n 
O04 C19 PGW doub 328 n n 
C05 H05 PGW sing 329 n n 
C5 C6 PGW sing 330 n n 
C5 H5 PGW sing 331 n n 
C5 H5A PGW sing 332 n n 
C06 C07 PGW sing 333 n n 
C06 H06 PGW sing 334 n n 
C06 H06A PGW sing 335 n n 
C6 C7 PGW sing 336 n n 
C6 H6 PGW sing 337 n n 
C6 H6A PGW sing 338 n n 
C07 H07 PGW sing 339 n n 
C07 H07A PGW sing 340 n n 
C7 C8 PGW sing 341 n n 
C7 H7 PGW sing 342 n n 
C7 H7A PGW sing 343 n n 
C08 C07 PGW sing 344 n n 
C08 H08 PGW sing 345 n n 
C08 H08A PGW sing 346 n n 
C8 C9 PGW sing 347 n n 
C8 H8 PGW sing 348 n n 
C8 H8A PGW sing 349 n n 
C09 C08 PGW sing 350 n n 
C09 C11 PGW sing 351 n n 
C09 H09 PGW sing 352 n n 
C09 H09A PGW sing 353 n n 
C9 C10 PGW doub 354 z n 
C10 C06 PGW sing 355 n n 
C11 H11 PGW sing 356 n n 
C11 H11A PGW sing 357 n n 
O11 C03 PGW sing 358 n n 
C12 C11 PGW sing 359 n n 
C12 H12 PGW sing 360 n n 
C12 H12A PGW sing 361 n n 
O12 P PGW sing 362 n n 
C13 C12 PGW sing 363 n n 
C13 C14 PGW sing 364 n n 
C13 H13 PGW sing 365 n n 
C13 H13A PGW sing 366 n n 
O13 HO13 PGW sing 367 n n 
C14 H14 PGW sing 368 n n 
C14 H14A PGW sing 369 n n 
C14 H14B PGW sing 370 n n 
O14 P PGW doub 371 n n 
C15 C16 PGW sing 372 n n 
C15 H15 PGW sing 373 n n 
C15 H15A PGW sing 374 n n 
C16 H16 PGW sing 375 n n 
C16 H16A PGW sing 376 n n 
C17 C16 PGW sing 377 n n 
C17 C18 PGW sing 378 n n 
C17 H17 PGW sing 379 n n 
C17 H17A PGW sing 380 n n 
C18 C28 PGW sing 381 n n 
C18 H18 PGW sing 382 n n 
C18 H18A PGW sing 383 n n 
C19 O03 PGW sing 384 n n 
C19 C20 PGW sing 385 n n 
C20 C21 PGW sing 386 n n 
C20 H20 PGW sing 387 n n 
C20 H20A PGW sing 388 n n 
C21 C22 PGW sing 389 n n 
C21 H21 PGW sing 390 n n 
C21 H21A PGW sing 391 n n 
C22 C23 PGW sing 392 n n 
C22 H22 PGW sing 393 n n 
C22 H22A PGW sing 394 n n 
C23 C24 PGW sing 395 n n 
C23 H23 PGW sing 396 n n 
C23 H23A PGW sing 397 n n 
C24 C25 PGW sing 398 n n 
C24 H24 PGW sing 399 n n 
C24 H24A PGW sing 400 n n 
C25 C26 PGW sing 401 n n 
C25 H25 PGW sing 402 n n 
C25 H25A PGW sing 403 n n 
C26 C27 PGW sing 404 n n 
C26 H26 PGW sing 405 n n 
C26 H26A PGW sing 406 n n 
C27 C15 PGW sing 407 n n 
C27 H27 PGW sing 408 n n 
C27 H27A PGW sing 409 n n 
C28 H28 PGW sing 410 n n 
C28 H28A PGW sing 411 n n 
C29 H29 PGW sing 412 n n 
C29 H29A PGW sing 413 n n 
C29 H29B PGW sing 414 n n 
C30 C28 PGW sing 415 n n 
C30 C29 PGW sing 416 n n 
C30 H30 PGW sing 417 n n 
C30 H30A PGW sing 418 n n 
C9 H9 PGW sing 419 n n 
C10 H10 PGW sing 420 n n 
#
_atom_sites.entry_id                     6TP3 
_atom_sites.fract_transf_matrix[1][1]    0.016334 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.0058 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00683 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014418 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NS2 A 1 401 401 NS2 UNL . 
D 3 SO4 A 1 402 1 SO4 SO4 . 
E 3 SO4 A 1 403 2 SO4 SO4 . 
F 4 PGW A 1 404 2 PGW PGW . 
G 5 SOG A 1 405 1 SOG SOG . 
H 5 SOG A 1 406 3 SOG SOG . 
I 5 SOG A 1 407 4 SOG SOG . 
J 5 SOG A 1 408 8 SOG SOG . 
K 5 SOG A 1 409 15 SOG SOG . 
L 5 SOG A 1 410 16 SOG SOG . 
M 5 SOG A 1 411 17 SOG SOG . 
N 2 NS2 B 1 401 401 NS2 UNL . 
O 3 SO4 B 1 402 3 SO4 SO4 . 
P 4 PGW B 1 403 1 PGW PGW . 
Q 5 SOG B 1 404 6 SOG SOG . 
R 5 SOG B 1 405 7 SOG SOG . 
S 5 SOG B 1 406 10 SOG SOG . 
T 5 SOG B 1 407 11 SOG SOG . 
U 5 SOG B 1 408 12 SOG SOG . 
V 5 SOG B 1 409 13 SOG SOG . 
W 5 SOG B 1 410 14 SOG SOG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAD PGW . . . P 4 -17.634 19.085 2.826 1 162.67 ? CAD PGW 403 B 1 
HETATM 2 O OAE PGW . . . P 4 -18.418 20.291 2.861 1 162.21 ? OAE PGW 403 B 1 
HETATM 3 O OAF PGW . . . P 4 -18.073 17.819 0.795 1 160.51 ? OAF PGW 403 B 1 
HETATM 4 P P PGW . . . P 4 -14.043 19.639 -0.343 1 157.06 ? P PGW 403 B 1 
HETATM 5 C C01 PGW . . . P 4 -18.386 21.559 -1.414 1 119.65 ? C01 PGW 403 B 1 
HETATM 6 C C1 PGW . . . P 4 -15.934 22.91 -3.818 1 107.22 ? C1 PGW 403 B 1 
HETATM 7 O O01 PGW . . . P 4 -16.459 22.648 -2.458 1 116.21 ? O01 PGW 403 B 1 
HETATM 8 C C02 PGW . . . P 4 -17.148 21.405 -2.283 1 123.69 ? C02 PGW 403 B 1 
HETATM 9 C C2 PGW . . . P 4 -14.834 23.926 -4.032 1 91.97 ? C2 PGW 403 B 1 
HETATM 10 O O02 PGW . . . P 4 -16.397 22.333 -4.802 1 110.24 ? O02 PGW 403 B 1 
HETATM 11 C C03 PGW . . . P 4 -16.236 20.279 -1.786 1 137.91 ? C03 PGW 403 B 1 
HETATM 12 C C3 PGW . . . P 4 -15.266 24.802 -5.19 1 80.78 ? C3 PGW 403 B 1 
HETATM 13 O O03 PGW . . . P 4 -19.305 22.379 -2.146 1 117.64 ? O03 PGW 403 B 1 
HETATM 14 C C04 PGW . . . P 4 -15.743 18.245 1.315 1 162.76 ? C04 PGW 403 B 1 
HETATM 15 C C4 PGW . . . P 4 -14.106 25.076 -6.113 1 77.19 ? C4 PGW 403 B 1 
HETATM 16 O O04 PGW . . . P 4 -21.372 21.758 -1.19 1 115.4 ? O04 PGW 403 B 1 
HETATM 17 C C05 PGW . . . P 4 -17.186 18.771 1.395 1 162.27 ? C05 PGW 403 B 1 
HETATM 18 C C5 PGW . . . P 4 -13.427 26.393 -5.753 1 74.57 ? C5 PGW 403 B 1 
HETATM 19 C C06 PGW . . . P 4 -14.045 31.939 -8.578 1 77.84 ? C06 PGW 403 B 1 
HETATM 20 C C6 PGW . . . P 4 -13.71 27.444 -6.81 1 71.68 ? C6 PGW 403 B 1 
HETATM 21 C C07 PGW . . . P 4 -14.051 33.391 -9.033 1 80.92 ? C07 PGW 403 B 1 
HETATM 22 C C7 PGW . . . P 4 -12.422 28.09 -7.266 1 72.55 ? C7 PGW 403 B 1 
HETATM 23 C C08 PGW . . . P 4 -14.987 33.601 -10.216 1 81.97 ? C08 PGW 403 B 1 
HETATM 24 C C8 PGW . . . P 4 -12.727 29.411 -7.966 1 76.03 ? C8 PGW 403 B 1 
HETATM 25 C C09 PGW . . . P 4 -16.234 34.374 -9.805 1 82.27 ? C09 PGW 403 B 1 
HETATM 26 C C9 PGW . . . P 4 -12.592 30.634 -7.064 1 75.96 ? C9 PGW 403 B 1 
HETATM 27 C C10 PGW . . . P 4 -13.191 31.788 -7.336 1 75.37 ? C10 PGW 403 B 1 
HETATM 28 C C11 PGW . . . P 4 -16.785 35.21 -10.954 1 82.06 ? C11 PGW 403 B 1 
HETATM 29 O O11 PGW . . . P 4 -15.109 20.701 -0.985 1 149.72 ? O11 PGW 403 B 1 
HETATM 30 C C12 PGW . . . P 4 -17.99 34.544 -11.618 1 81.51 ? C12 PGW 403 B 1 
HETATM 31 O O12 PGW . . . P 4 -14.777 19.296 1.081 1 162.02 ? O12 PGW 403 B 1 
HETATM 32 C C13 PGW . . . P 4 -18.919 35.597 -12.207 1 79.87 ? C13 PGW 403 B 1 
HETATM 33 O O13 PGW . . . P 4 -13.992 18.414 -1.259 1 155.97 ? O13 PGW 403 B 1 
HETATM 34 C C14 PGW . . . P 4 -20.189 35.725 -11.403 1 79.35 ? C14 PGW 403 B 1 
HETATM 35 O O14 PGW . . . P 4 -12.746 20.362 0.005 1 154.61 ? O14 PGW 403 B 1 
HETATM 36 C C15 PGW . . . P 4 -22.429 29.865 -4.71 1 71.48 ? C15 PGW 403 B 1 
HETATM 37 C C16 PGW . . . P 4 -22.846 29.108 -5.967 1 70.11 ? C16 PGW 403 B 1 
HETATM 38 C C17 PGW . . . P 4 -22.271 29.71 -7.252 1 69.2 ? C17 PGW 403 B 1 
HETATM 39 C C18 PGW . . . P 4 -22.432 28.683 -8.38 1 66.23 ? C18 PGW 403 B 1 
HETATM 40 C C19 PGW . . . P 4 -20.773 22.281 -2.122 1 113.71 ? C19 PGW 403 B 1 
HETATM 41 C C20 PGW . . . P 4 -21.579 22.851 -3.268 1 106.4 ? C20 PGW 403 B 1 
HETATM 42 C C21 PGW . . . P 4 -21.775 24.348 -3.074 1 99.87 ? C21 PGW 403 B 1 
HETATM 43 C C22 PGW . . . P 4 -22.97 24.652 -2.192 1 96.67 ? C22 PGW 403 B 1 
HETATM 44 C C23 PGW . . . P 4 -24.091 25.287 -3.005 1 95.3 ? C23 PGW 403 B 1 
HETATM 45 C C24 PGW . . . P 4 -24.716 26.479 -2.271 1 94.54 ? C24 PGW 403 B 1 
HETATM 46 C C25 PGW . . . P 4 -24.755 27.771 -3.109 1 90.81 ? C25 PGW 403 B 1 
HETATM 47 C C26 PGW . . . P 4 -23.623 28.754 -2.796 1 82.82 ? C26 PGW 403 B 1 
HETATM 48 C C27 PGW . . . P 4 -23.614 29.925 -3.764 1 75.64 ? C27 PGW 403 B 1 
HETATM 49 C C28 PGW . . . P 4 -21.549 28.972 -9.589 1 63.07 ? C28 PGW 403 B 1 
HETATM 50 C C29 PGW . . . P 4 -22.265 28.333 -11.923 1 60.15 ? C29 PGW 403 B 1 
HETATM 51 C C30 PGW . . . P 4 -22.397 29.337 -10.801 1 61.27 ? C30 PGW 403 B 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           51 
#