data_6TP4 # _model_server_result.job_id iJFSvVbvNJT2iA0ZyntpBA _model_server_result.datetime_utc '2024-11-05 04:52:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tp4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6TP4 # _exptl.entry_id 6TP4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 388.481 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{S})-~{N}-(3,5-dimethylphenyl)-1-(4-methoxyphenyl)sulfonyl-pyrrolidine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.29 _cell.angle_gamma 90 _cell.entry_id 6TP4 _cell.length_a 61.719 _cell.length_b 146.666 _cell.length_c 73.748 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TP4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,N 1 1 B,I,J,K,L,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 95 A CYS 119 1_555 A SG CYS 178 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 B SG CYS 95 B CYS 119 1_555 B SG CYS 178 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C20 H24 N2 O4 S' _chem_comp.formula_weight 388.481 _chem_comp.id NRZ _chem_comp.mon_nstd_flag . _chem_comp.name (2~{S})-~{N}-(3,5-dimethylphenyl)-1-(4-methoxyphenyl)sulfonyl-pyrrolidine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C9 NRZ sing 237 n n C10 C11 NRZ sing 238 n n C9 C8 NRZ sing 239 n n C11 C12 NRZ sing 240 n n C11 N1 NRZ sing 241 n n C8 N1 NRZ sing 242 n n C12 O4 NRZ doub 243 n n C12 N2 NRZ sing 244 n n N1 S1 NRZ sing 245 n n N2 C13 NRZ sing 246 n n C13 C18 NRZ doub 247 n y C13 C14 NRZ sing 248 n y C18 C17 NRZ sing 249 n y C14 C15 NRZ doub 250 n y C17 C19 NRZ sing 251 n n C17 C16 NRZ doub 252 n y C15 C16 NRZ sing 253 n y C15 C20 NRZ sing 254 n n S1 O2 NRZ doub 255 n n S1 C5 NRZ sing 256 n n S1 O3 NRZ doub 257 n n C6 C7 NRZ doub 258 n y C6 C5 NRZ sing 259 n y C7 C2 NRZ sing 260 n y C5 C4 NRZ doub 261 n y C1 O1 NRZ sing 262 n n C2 O1 NRZ sing 263 n n C2 C3 NRZ doub 264 n y C4 C3 NRZ sing 265 n y C1 H2 NRZ sing 266 n n C1 H1 NRZ sing 267 n n C1 H3 NRZ sing 268 n n C10 H12 NRZ sing 269 n n C10 H13 NRZ sing 270 n n C11 H14 NRZ sing 271 n n C14 H16 NRZ sing 272 n n C16 H17 NRZ sing 273 n n C18 H18 NRZ sing 274 n n C19 H19 NRZ sing 275 n n C19 H20 NRZ sing 276 n n C19 H21 NRZ sing 277 n n C20 H23 NRZ sing 278 n n C20 H24 NRZ sing 279 n n C20 H22 NRZ sing 280 n n C3 H4 NRZ sing 281 n n C4 H5 NRZ sing 282 n n C6 H6 NRZ sing 283 n n C7 H7 NRZ sing 284 n n C8 H8 NRZ sing 285 n n C8 H9 NRZ sing 286 n n C9 H11 NRZ sing 287 n n C9 H10 NRZ sing 288 n n N2 H15 NRZ sing 289 n n # _atom_sites.entry_id 6TP4 _atom_sites.fract_transf_matrix[1][1] 0.016202 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005356 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006818 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014281 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NRZ A 1 401 401 NRZ UNL . D 3 SOG A 1 402 1 SOG SOG . E 3 SOG A 1 403 4 SOG SOG . F 3 SOG A 1 404 5 SOG SOG . G 4 SO4 A 1 405 3 SO4 SO4 . H 5 PGW A 1 406 2 PGW PGW . I 3 SOG B 1 401 2 SOG SOG . J 3 SOG B 1 402 3 SOG SOG . K 4 SO4 B 1 403 1 SO4 SO4 . L 4 SO4 B 1 404 2 SO4 SO4 . M 5 PGW B 1 405 1 PGW PGW . N 6 HOH A 1 501 3 HOH HOH . N 6 HOH A 2 502 2 HOH HOH . N 6 HOH A 3 503 4 HOH HOH . N 6 HOH A 4 504 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NRZ . . . C 2 56.284 -7.994 30.877 0 15.5 ? C1 NRZ 401 A 1 HETATM 2 C C10 NRZ . . . C 2 54.399 -0.617 26.255 1 119.35 ? C10 NRZ 401 A 1 HETATM 3 C C11 NRZ . . . C 2 54.966 -0.326 27.649 1 127.89 ? C11 NRZ 401 A 1 HETATM 4 C C12 NRZ . . . C 2 54.494 1.008 28.212 1 121.06 ? C12 NRZ 401 A 1 HETATM 5 C C13 NRZ . . . C 2 55.475 3.146 29.055 1 99.74 ? C13 NRZ 401 A 1 HETATM 6 C C14 NRZ . . . C 2 56.658 3.759 29.456 1 87.63 ? C14 NRZ 401 A 1 HETATM 7 C C15 NRZ . . . C 2 56.651 5.047 29.984 1 81.73 ? C15 NRZ 401 A 1 HETATM 8 C C16 NRZ . . . C 2 55.436 5.716 30.097 1 84.09 ? C16 NRZ 401 A 1 HETATM 9 C C17 NRZ . . . C 2 54.241 5.127 29.693 1 88.82 ? C17 NRZ 401 A 1 HETATM 10 C C18 NRZ . . . C 2 54.274 3.837 29.174 1 100.24 ? C18 NRZ 401 A 1 HETATM 11 C C19 NRZ . . . C 2 52.921 5.849 29.817 1 82.35 ? C19 NRZ 401 A 1 HETATM 12 C C2 NRZ . . . C 2 56.26 -5.604 31.182 0.05 51.34 ? C2 NRZ 401 A 1 HETATM 13 C C20 NRZ . . . C 2 57.947 5.682 30.429 1 81.8 ? C20 NRZ 401 A 1 HETATM 14 C C3 NRZ . . . C 2 56.877 -4.436 31.608 1 63.66 ? C3 NRZ 401 A 1 HETATM 15 C C4 NRZ . . . C 2 56.35 -3.207 31.262 0.13 89.55 ? C4 NRZ 401 A 1 HETATM 16 C C5 NRZ . . . C 2 55.203 -3.136 30.489 0.8 122.81 ? C5 NRZ 401 A 1 HETATM 17 C C6 NRZ . . . C 2 54.578 -4.299 30.074 0.45 90.63 ? C6 NRZ 401 A 1 HETATM 18 C C7 NRZ . . . C 2 55.104 -5.528 30.419 0 72.1 ? C7 NRZ 401 A 1 HETATM 19 C C8 NRZ . . . C 2 53.203 -2.011 27.745 1 134.38 ? C8 NRZ 401 A 1 HETATM 20 C C9 NRZ . . . C 2 52.999 -1.07 26.58 1 122.38 ? C9 NRZ 401 A 1 HETATM 21 N N1 NRZ . . . C 2 54.422 -1.482 28.425 1 153.29 ? N1 NRZ 401 A 1 HETATM 22 N N2 NRZ . . . C 2 55.519 1.838 28.523 1 111.05 ? N2 NRZ 401 A 1 HETATM 23 O O1 NRZ . . . C 2 56.782 -6.826 31.528 0.61 22.66 ? O1 NRZ 401 A 1 HETATM 24 O O2 NRZ . . . C 2 55.507 -0.581 30.434 1 209.84 ? O2 NRZ 401 A 1 HETATM 25 O O3 NRZ . . . C 2 53.202 -1.489 30.578 1 210.14 ? O3 NRZ 401 A 1 HETATM 26 O O4 NRZ . . . C 2 53.312 1.262 28.363 1 116.89 ? O4 NRZ 401 A 1 HETATM 27 S S1 NRZ . . . C 2 54.533 -1.558 30.055 1 196.19 ? S1 NRZ 401 A 1 HETATM 28 H H2 NRZ . . . C 2 56.76 -8.775 31.204 0 19.58 ? H2 NRZ 401 A 1 HETATM 29 H H1 NRZ . . . C 2 56.418 -7.912 29.919 0.04 19.58 ? H1 NRZ 401 A 1 HETATM 30 H H3 NRZ . . . C 2 55.336 -8.09 31.065 1 19.58 ? H3 NRZ 401 A 1 HETATM 31 H H12 NRZ . . . C 2 54.394 0.186 25.694 1 144.2 ? H12 NRZ 401 A 1 HETATM 32 H H13 NRZ . . . C 2 54.906 -1.319 25.8 1 144.2 ? H13 NRZ 401 A 1 HETATM 33 H H14 NRZ . . . C 2 55.957 -0.326 27.634 1 154.46 ? H14 NRZ 401 A 1 HETATM 34 H H16 NRZ . . . C 2 57.475 3.298 29.37 1 106.15 ? H16 NRZ 401 A 1 HETATM 35 H H17 NRZ . . . C 2 55.422 6.586 30.455 1 101.89 ? H17 NRZ 401 A 1 HETATM 36 H H18 NRZ . . . C 2 53.471 3.427 28.901 1 121.28 ? H18 NRZ 401 A 1 HETATM 37 H H19 NRZ . . . C 2 52.211 5.204 29.967 1 99.81 ? H19 NRZ 401 A 1 HETATM 38 H H20 NRZ . . . C 2 52.742 6.341 28.999 1 99.81 ? H20 NRZ 401 A 1 HETATM 39 H H21 NRZ . . . C 2 52.958 6.468 30.564 1 99.81 ? H21 NRZ 401 A 1 HETATM 40 H H23 NRZ . . . C 2 58.665 5.407 29.836 1 99.15 ? H23 NRZ 401 A 1 HETATM 41 H H24 NRZ . . . C 2 58.153 5.401 31.336 1 99.15 ? H24 NRZ 401 A 1 HETATM 42 H H22 NRZ . . . C 2 57.861 6.649 30.404 1 99.15 ? H22 NRZ 401 A 1 HETATM 43 H H4 NRZ . . . C 2 57.654 -4.48 32.131 0 77.38 ? H4 NRZ 401 A 1 HETATM 44 H H5 NRZ . . . C 2 56.772 -2.421 31.554 0 108.45 ? H5 NRZ 401 A 1 HETATM 45 H H6 NRZ . . . C 2 53.796 -4.256 29.557 0 109.75 ? H6 NRZ 401 A 1 HETATM 46 H H7 NRZ . . . C 2 54.677 -6.313 30.137 0 87.51 ? H7 NRZ 401 A 1 HETATM 47 H H8 NRZ . . . C 2 53.346 -2.927 27.435 1 162.24 ? H8 NRZ 401 A 1 HETATM 48 H H9 NRZ . . . C 2 52.432 -1.995 28.347 1 162.24 ? H9 NRZ 401 A 1 HETATM 49 H H11 NRZ . . . C 2 52.593 -1.533 25.819 1 147.84 ? H11 NRZ 401 A 1 HETATM 50 H H10 NRZ . . . C 2 52.432 -0.313 26.831 1 147.84 ? H10 NRZ 401 A 1 HETATM 51 H H15 NRZ . . . C 2 56.321 1.523 28.375 1 134.24 ? H15 NRZ 401 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 51 #