data_6TP4
#
_model_server_result.job_id            XmytsStccmp7bx02hLzTTQ 
_model_server_result.datetime_utc      '2024-11-05 04:56:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6tp4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":402}' 
#
_entry.id    6TP4 
#
_exptl.entry_id    6TP4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              308.434 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl 1-thio-beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.29 
_cell.angle_gamma         90 
_cell.entry_id            6TP4 
_cell.length_a            61.719 
_cell.length_b            146.666 
_cell.length_c            73.748 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6TP4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,N 1 1 
B,I,J,K,L,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 I N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 95 A CYS 119 1_555 A SG CYS 178 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf2 B SG CYS 95 B CYS 119 1_555 B SG CYS 178 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
#
_chem_comp.formula           'C14 H28 O5 S' 
_chem_comp.formula_weight    308.434 
_chem_comp.id                SOG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'octyl 1-thio-beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     '2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4,5-TRIOL;1-S-OCTYL-BETA-D-THIOGLUCOSIDE;octyl 1-thio-beta-D-glucoside;octyl 1-thio-D-glucoside;octyl 1-thio-glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 SOG sing 474 n n 
C1 S1 SOG sing 475 n n 
C1 O5 SOG sing 476 n n 
C1 H1 SOG sing 477 n n 
C2 C3 SOG sing 478 n n 
C2 O2 SOG sing 479 n n 
C2 H2 SOG sing 480 n n 
C3 C4 SOG sing 481 n n 
C3 O3 SOG sing 482 n n 
C3 H3 SOG sing 483 n n 
C4 C5 SOG sing 484 n n 
C4 O4 SOG sing 485 n n 
C4 H4 SOG sing 486 n n 
C5 C6 SOG sing 487 n n 
C5 O5 SOG sing 488 n n 
C5 H5 SOG sing 489 n n 
C6 O6 SOG sing 490 n n 
C6 H61 SOG sing 491 n n 
C6 H62 SOG sing 492 n n 
C1' C2' SOG sing 493 n n 
C1' S1 SOG sing 494 n n 
C1' "H1'1" SOG sing 495 n n 
C1' "H1'2" SOG sing 496 n n 
C2' C3' SOG sing 497 n n 
C2' "H2'1" SOG sing 498 n n 
C2' "H2'2" SOG sing 499 n n 
C3' C4' SOG sing 500 n n 
C3' "H3'1" SOG sing 501 n n 
C3' "H3'2" SOG sing 502 n n 
C4' C5' SOG sing 503 n n 
C4' "H4'1" SOG sing 504 n n 
C4' "H4'2" SOG sing 505 n n 
C5' C6' SOG sing 506 n n 
C5' "H5'1" SOG sing 507 n n 
C5' "H5'2" SOG sing 508 n n 
C6' C7' SOG sing 509 n n 
C6' "H6'1" SOG sing 510 n n 
C6' "H6'2" SOG sing 511 n n 
C7' C8' SOG sing 512 n n 
C7' "H7'1" SOG sing 513 n n 
C7' "H7'2" SOG sing 514 n n 
C8' "H8'1" SOG sing 515 n n 
C8' "H8'2" SOG sing 516 n n 
C8' "H8'3" SOG sing 517 n n 
O2 HO2 SOG sing 518 n n 
O3 HO3 SOG sing 519 n n 
O4 HO4 SOG sing 520 n n 
O6 HO6 SOG sing 521 n n 
#
_atom_sites.entry_id                     6TP4 
_atom_sites.fract_transf_matrix[1][1]    0.016202 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005356 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006818 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014281 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NRZ A 1 401 401 NRZ UNL . 
D 3 SOG A 1 402 1 SOG SOG . 
E 3 SOG A 1 403 4 SOG SOG . 
F 3 SOG A 1 404 5 SOG SOG . 
G 4 SO4 A 1 405 3 SO4 SO4 . 
H 5 PGW A 1 406 2 PGW PGW . 
I 3 SOG B 1 401 2 SOG SOG . 
J 3 SOG B 1 402 3 SOG SOG . 
K 4 SO4 B 1 403 1 SO4 SO4 . 
L 4 SO4 B 1 404 2 SO4 SO4 . 
M 5 PGW B 1 405 1 PGW PGW . 
N 6 HOH A 1 501 3 HOH HOH . 
N 6 HOH A 2 502 2 HOH HOH . 
N 6 HOH A 3 503 4 HOH HOH . 
N 6 HOH A 4 504 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 SOG . . . J 3 68.823 -11.013 10.742 1 156.96 ? C1 SOG 402 B 1 
HETATM 2 C C2 SOG . . . J 3 67.646 -10.332 10.058 1 150.82 ? C2 SOG 402 B 1 
HETATM 3 C C3 SOG . . . J 3 68.166 -9.176 9.209 1 137.93 ? C3 SOG 402 B 1 
HETATM 4 C C4 SOG . . . J 3 69.033 -8.239 10.029 1 132.55 ? C4 SOG 402 B 1 
HETATM 5 C C5 SOG . . . J 3 70.108 -9.022 10.783 1 142.75 ? C5 SOG 402 B 1 
HETATM 6 C C6 SOG . . . J 3 70.904 -8.154 11.743 1 144.24 ? C6 SOG 402 B 1 
HETATM 7 S S1 SOG . . . J 3 68.289 -12.419 11.748 1 164.02 ? S1 SOG 402 B 1 
HETATM 8 O O2 SOG . . . J 3 66.962 -11.256 9.219 1 155.27 ? O2 SOG 402 B 1 
HETATM 9 O O3 SOG . . . J 3 67.082 -8.464 8.615 1 134.53 ? O3 SOG 402 B 1 
HETATM 10 O O4 SOG . . . J 3 69.658 -7.277 9.183 1 125 ? O4 SOG 402 B 1 
HETATM 11 O O5 SOG . . . J 3 69.505 -10.073 11.558 1 152.71 ? O5 SOG 402 B 1 
HETATM 12 O O6 SOG . . . J 3 72.304 -8.215 11.466 1 146.73 ? O6 SOG 402 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           12 
#