data_6TP4 # _model_server_result.job_id WAMPPzVBjktz52F62zo8KQ _model_server_result.datetime_utc '2024-11-22 17:43:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tp4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":406}' # _entry.id 6TP4 # _exptl.entry_id 6TP4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 749.007 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.29 _cell.angle_gamma 90 _cell.entry_id 6TP4 _cell.length_a 61.719 _cell.length_b 146.666 _cell.length_c 73.748 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TP4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,N 1 1 B,I,J,K,L,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 95 A CYS 119 1_555 A SG CYS 178 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 B SG CYS 95 B CYS 119 1_555 B SG CYS 178 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C40 H77 O10 P' _chem_comp.formula_weight 749.007 _chem_comp.id PGW _chem_comp.mon_nstd_flag . _chem_comp.name '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Palmitoyl-2-Oleoyl-sn-Glycero-3-[Phospho-(1-glycerol)];PHOSPHATIDYLGLYCEROL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAD C05 PGW sing 290 n n CAD HAD PGW sing 291 n n CAD HADA PGW sing 292 n n OAE CAD PGW sing 293 n n OAE HOAE PGW sing 294 n n OAF C05 PGW sing 295 n n OAF HOAF PGW sing 296 n n P O13 PGW sing 297 n n P O11 PGW sing 298 n n C01 O03 PGW sing 299 n n C01 C02 PGW sing 300 n n C01 H01 PGW sing 301 n n C01 H01A PGW sing 302 n n C1 C2 PGW sing 303 n n O01 C1 PGW sing 304 n n C02 O01 PGW sing 305 n n C02 H02 PGW sing 306 n n C2 C3 PGW sing 307 n n C2 H2 PGW sing 308 n n C2 H2A PGW sing 309 n n O02 C1 PGW doub 310 n n C03 C02 PGW sing 311 n n C03 H03 PGW sing 312 n n C03 H03A PGW sing 313 n n C3 C4 PGW sing 314 n n C3 H3 PGW sing 315 n n C3 H3A PGW sing 316 n n C04 C05 PGW sing 317 n n C04 O12 PGW sing 318 n n C04 H04 PGW sing 319 n n C04 H04A PGW sing 320 n n C4 C5 PGW sing 321 n n C4 H4 PGW sing 322 n n C4 H4A PGW sing 323 n n O04 C19 PGW doub 324 n n C05 H05 PGW sing 325 n n C5 C6 PGW sing 326 n n C5 H5 PGW sing 327 n n C5 H5A PGW sing 328 n n C06 C07 PGW sing 329 n n C06 H06 PGW sing 330 n n C06 H06A PGW sing 331 n n C6 C7 PGW sing 332 n n C6 H6 PGW sing 333 n n C6 H6A PGW sing 334 n n C07 H07 PGW sing 335 n n C07 H07A PGW sing 336 n n C7 C8 PGW sing 337 n n C7 H7 PGW sing 338 n n C7 H7A PGW sing 339 n n C08 C07 PGW sing 340 n n C08 H08 PGW sing 341 n n C08 H08A PGW sing 342 n n C8 C9 PGW sing 343 n n C8 H8 PGW sing 344 n n C8 H8A PGW sing 345 n n C09 C08 PGW sing 346 n n C09 C11 PGW sing 347 n n C09 H09 PGW sing 348 n n C09 H09A PGW sing 349 n n C9 C10 PGW doub 350 z n C10 C06 PGW sing 351 n n C11 H11 PGW sing 352 n n C11 H11A PGW sing 353 n n O11 C03 PGW sing 354 n n C12 C11 PGW sing 355 n n C12 H12 PGW sing 356 n n C12 H12A PGW sing 357 n n O12 P PGW sing 358 n n C13 C12 PGW sing 359 n n C13 C14 PGW sing 360 n n C13 H13 PGW sing 361 n n C13 H13A PGW sing 362 n n O13 HO13 PGW sing 363 n n C14 H14 PGW sing 364 n n C14 H14A PGW sing 365 n n C14 H14B PGW sing 366 n n O14 P PGW doub 367 n n C15 C16 PGW sing 368 n n C15 H15 PGW sing 369 n n C15 H15A PGW sing 370 n n C16 H16 PGW sing 371 n n C16 H16A PGW sing 372 n n C17 C16 PGW sing 373 n n C17 C18 PGW sing 374 n n C17 H17 PGW sing 375 n n C17 H17A PGW sing 376 n n C18 C28 PGW sing 377 n n C18 H18 PGW sing 378 n n C18 H18A PGW sing 379 n n C19 O03 PGW sing 380 n n C19 C20 PGW sing 381 n n C20 C21 PGW sing 382 n n C20 H20 PGW sing 383 n n C20 H20A PGW sing 384 n n C21 C22 PGW sing 385 n n C21 H21 PGW sing 386 n n C21 H21A PGW sing 387 n n C22 C23 PGW sing 388 n n C22 H22 PGW sing 389 n n C22 H22A PGW sing 390 n n C23 C24 PGW sing 391 n n C23 H23 PGW sing 392 n n C23 H23A PGW sing 393 n n C24 C25 PGW sing 394 n n C24 H24 PGW sing 395 n n C24 H24A PGW sing 396 n n C25 C26 PGW sing 397 n n C25 H25 PGW sing 398 n n C25 H25A PGW sing 399 n n C26 C27 PGW sing 400 n n C26 H26 PGW sing 401 n n C26 H26A PGW sing 402 n n C27 C15 PGW sing 403 n n C27 H27 PGW sing 404 n n C27 H27A PGW sing 405 n n C28 H28 PGW sing 406 n n C28 H28A PGW sing 407 n n C29 H29 PGW sing 408 n n C29 H29A PGW sing 409 n n C29 H29B PGW sing 410 n n C30 C28 PGW sing 411 n n C30 C29 PGW sing 412 n n C30 H30 PGW sing 413 n n C30 H30A PGW sing 414 n n C9 H9 PGW sing 415 n n C10 H10 PGW sing 416 n n # _atom_sites.entry_id 6TP4 _atom_sites.fract_transf_matrix[1][1] 0.016202 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005356 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006818 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014281 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NRZ A 1 401 401 NRZ UNL . D 3 SOG A 1 402 1 SOG SOG . E 3 SOG A 1 403 4 SOG SOG . F 3 SOG A 1 404 5 SOG SOG . G 4 SO4 A 1 405 3 SO4 SO4 . H 5 PGW A 1 406 2 PGW PGW . I 3 SOG B 1 401 2 SOG SOG . J 3 SOG B 1 402 3 SOG SOG . K 4 SO4 B 1 403 1 SO4 SO4 . L 4 SO4 B 1 404 2 SO4 SO4 . M 5 PGW B 1 405 1 PGW PGW . N 6 HOH A 1 501 3 HOH HOH . N 6 HOH A 2 502 2 HOH HOH . N 6 HOH A 3 503 4 HOH HOH . N 6 HOH A 4 504 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAD PGW . . . H 5 67.226 -36.515 30.464 1 106.74 ? CAD PGW 406 A 1 HETATM 2 O OAE PGW . . . H 5 66.64 -36.809 29.198 1 89.57 ? OAE PGW 406 A 1 HETATM 3 O OAF PGW . . . H 5 67.349 -34.156 29.951 1 103.1 ? OAF PGW 406 A 1 HETATM 4 P P PGW . . . H 5 66.904 -32.971 34.197 1 170.37 ? P PGW 406 A 1 HETATM 5 C C01 PGW . . . H 5 62.776 -30.445 34.249 1 111.94 ? C01 PGW 406 A 1 HETATM 6 C C1 PGW . . . H 5 64.733 -30.244 31.166 1 90.56 ? C1 PGW 406 A 1 HETATM 7 O O01 PGW . . . H 5 64.271 -29.978 32.403 1 111.84 ? O01 PGW 406 A 1 HETATM 8 C C02 PGW . . . H 5 63.597 -31.045 33.131 1 125.7 ? C02 PGW 406 A 1 HETATM 9 C C2 PGW . . . H 5 64.599 -29.075 30.227 1 74.46 ? C2 PGW 406 A 1 HETATM 10 O O02 PGW . . . H 5 65.19 -31.31 30.858 1 85.95 ? O02 PGW 406 A 1 HETATM 11 C C03 PGW . . . H 5 64.5 -32.183 33.553 1 154.27 ? C03 PGW 406 A 1 HETATM 12 C C3 PGW . . . H 5 65.869 -28.313 30.017 1 55.32 ? C3 PGW 406 A 1 HETATM 13 O O03 PGW . . . H 5 61.533 -30.017 33.65 1 109.86 ? O03 PGW 406 A 1 HETATM 14 C C04 PGW . . . H 5 67.432 -34.76 32.289 1 140.91 ? C04 PGW 406 A 1 HETATM 15 C C4 PGW . . . H 5 65.735 -27.278 28.912 1 52.26 ? C4 PGW 406 A 1 HETATM 16 O O04 PGW . . . H 5 60.96 -32.152 33.299 1 108.11 ? O04 PGW 406 A 1 HETATM 17 C C05 PGW . . . H 5 66.896 -35.108 30.915 1 117.62 ? C05 PGW 406 A 1 HETATM 18 C C5 PGW . . . H 5 66.931 -26.373 28.745 1 58.89 ? C5 PGW 406 A 1 HETATM 19 C C06 PGW . . . H 5 66.617 -20.421 25.856 1 69.28 ? C06 PGW 406 A 1 HETATM 20 C C6 PGW . . . H 5 66.765 -25.314 27.683 1 49.36 ? C6 PGW 406 A 1 HETATM 21 C C07 PGW . . . H 5 65.975 -19.089 25.624 1 81.19 ? C07 PGW 406 A 1 HETATM 22 C C7 PGW . . . H 5 67.781 -24.185 27.791 1 47.15 ? C7 PGW 406 A 1 HETATM 23 C C08 PGW . . . H 5 65.848 -18.727 24.151 1 89.14 ? C08 PGW 406 A 1 HETATM 24 C C8 PGW . . . H 5 67.473 -23.004 26.931 1 55.62 ? C8 PGW 406 A 1 HETATM 25 C C09 PGW . . . H 5 64.875 -17.607 23.864 1 89.3 ? C09 PGW 406 A 1 HETATM 26 C C9 PGW . . . H 5 67.804 -21.698 27.588 1 50.53 ? C9 PGW 406 A 1 HETATM 27 C C10 PGW . . . H 5 67.34 -20.554 27.161 1 53.57 ? C10 PGW 406 A 1 HETATM 28 C C11 PGW . . . H 5 63.457 -18.069 23.608 1 78.69 ? C11 PGW 406 A 1 HETATM 29 O O11 PGW . . . H 5 65.781 -31.821 34.143 1 170.15 ? O11 PGW 406 A 1 HETATM 30 C C12 PGW . . . H 5 62.447 -16.954 23.479 1 69.18 ? C12 PGW 406 A 1 HETATM 31 O O12 PGW . . . H 5 66.93 -33.441 32.655 1 160.88 ? O12 PGW 406 A 1 HETATM 32 C C13 PGW . . . H 5 61.054 -17.452 23.199 1 67.4 ? C13 PGW 406 A 1 HETATM 33 O O13 PGW . . . H 5 68.224 -32.378 34.611 1 167.63 ? O13 PGW 406 A 1 HETATM 34 C C14 PGW . . . H 5 60.004 -16.417 23.515 1 74.84 ? C14 PGW 406 A 1 HETATM 35 O O14 PGW . . . H 5 66.343 -34.112 34.999 1 170.01 ? O14 PGW 406 A 1 HETATM 36 C C15 PGW . . . H 5 57.914 -22.687 30.954 1 42.76 ? C15 PGW 406 A 1 HETATM 37 C C16 PGW . . . H 5 57.369 -22.503 29.566 1 41.07 ? C16 PGW 406 A 1 HETATM 38 C C17 PGW . . . H 5 58.411 -22.56 28.477 1 38.21 ? C17 PGW 406 A 1 HETATM 39 C C18 PGW . . . H 5 58.034 -23.488 27.344 1 24.73 ? C18 PGW 406 A 1 HETATM 40 C C19 PGW . . . H 5 60.818 -30.978 33.063 1 106.57 ? C19 PGW 406 A 1 HETATM 41 C C20 PGW . . . H 5 59.837 -30.431 32.061 1 94.24 ? C20 PGW 406 A 1 HETATM 42 C C21 PGW . . . H 5 58.952 -29.349 32.602 1 76.65 ? C21 PGW 406 A 1 HETATM 43 C C22 PGW . . . H 5 57.693 -29.164 31.768 1 62.43 ? C22 PGW 406 A 1 HETATM 44 C C23 PGW . . . H 5 56.755 -28.078 32.251 1 49.38 ? C23 PGW 406 A 1 HETATM 45 C C24 PGW . . . H 5 57.073 -26.689 31.752 1 35.15 ? C24 PGW 406 A 1 HETATM 46 C C25 PGW . . . H 5 55.939 -25.708 31.952 1 49.69 ? C25 PGW 406 A 1 HETATM 47 C C26 PGW . . . H 5 56.091 -24.402 31.202 1 54.49 ? C26 PGW 406 A 1 HETATM 48 C C27 PGW . . . H 5 56.938 -23.348 31.885 1 52.5 ? C27 PGW 406 A 1 HETATM 49 C C28 PGW . . . H 5 58.607 -23.104 25.999 1 23.11 ? C28 PGW 406 A 1 HETATM 50 C C29 PGW . . . H 5 58.635 -23.52 23.512 1 38.08 ? C29 PGW 406 A 1 HETATM 51 C C30 PGW . . . H 5 58.132 -23.974 24.861 1 33.16 ? C30 PGW 406 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 51 #