data_6TP6 # _model_server_result.job_id jNyYFnLGB95xhYvawLUAhw _model_server_result.datetime_utc '2024-11-22 17:48:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tp6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6TP6 # _exptl.entry_id 6TP6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 420.479 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R},5~{R})-5-[(5-fluoranylpyridin-2-yl)oxymethyl]-2-methyl-piperidin-1-yl]-(5-methyl-2-pyrimidin-2-yl-phenyl)methanone' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.12 _cell.angle_gamma 90 _cell.entry_id 6TP6 _cell.length_a 59.892 _cell.length_b 146.202 _cell.length_c 72.328 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TP6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,W 1 1 B,N,O,P,Q,R,S,T,U,V,X 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 95 A CYS 119 1_555 A SG CYS 178 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 95 B CYS 119 1_555 B SG CYS 178 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C24 H25 F N4 O2' _chem_comp.formula_weight 420.479 _chem_comp.id NT5 _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R},5~{R})-5-[(5-fluoranylpyridin-2-yl)oxymethyl]-2-methyl-piperidin-1-yl]-(5-methyl-2-pyrimidin-2-yl-phenyl)methanone' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C3 NT5 sing 237 n n C4 C5 NT5 sing 238 n n C3 C2 NT5 sing 239 n n C5 C6 NT5 sing 240 n n C5 C12 NT5 sing 241 n n C6 O1 NT5 sing 242 n n C1 C2 NT5 sing 243 n n C12 N2 NT5 sing 244 n n C2 N2 NT5 sing 245 n n O1 C7 NT5 sing 246 n n N1 C7 NT5 doub 247 n y N1 C11 NT5 sing 248 n y C7 C8 NT5 sing 249 n y C11 C10 NT5 doub 250 n y N2 C13 NT5 sing 251 n n C8 C9 NT5 doub 252 n y C10 C9 NT5 sing 253 n y C10 F1 NT5 sing 254 n n C13 O2 NT5 doub 255 n n C13 C14 NT5 sing 256 n n C21 C22 NT5 doub 257 n y C21 N3 NT5 sing 258 n y C22 C23 NT5 sing 259 n y N3 C20 NT5 doub 260 n y C23 N4 NT5 doub 261 n y C14 C15 NT5 doub 262 n y C14 C19 NT5 sing 263 n y C20 N4 NT5 sing 264 n y C20 C19 NT5 sing 265 n n C15 C16 NT5 sing 266 n y C19 C18 NT5 doub 267 n y C16 C24 NT5 sing 268 n n C16 C17 NT5 doub 269 n y C18 C17 NT5 sing 270 n y C1 H12 NT5 sing 271 n n C1 H11 NT5 sing 272 n n C1 H13 NT5 sing 273 n n C11 H111 NT5 sing 274 n n C12 H122 NT5 sing 275 n n C12 H121 NT5 sing 276 n n C15 H151 NT5 sing 277 n n C17 H171 NT5 sing 278 n n C18 H181 NT5 sing 279 n n C2 H21 NT5 sing 280 n n C21 H211 NT5 sing 281 n n C22 H221 NT5 sing 282 n n C23 H231 NT5 sing 283 n n C24 H241 NT5 sing 284 n n C24 H243 NT5 sing 285 n n C24 H242 NT5 sing 286 n n C3 H32 NT5 sing 287 n n C3 H31 NT5 sing 288 n n C4 H42 NT5 sing 289 n n C4 H41 NT5 sing 290 n n C5 H51 NT5 sing 291 n n C6 H61 NT5 sing 292 n n C6 H62 NT5 sing 293 n n C8 H81 NT5 sing 294 n n C9 H91 NT5 sing 295 n n # _atom_sites.entry_id 6TP6 _atom_sites.fract_transf_matrix[1][1] 0.016697 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00645 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00684 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014822 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NT5 A 1 401 401 NT5 UNL . D 3 PG4 A 1 402 501 PG4 PG4 . E 4 SO4 A 1 403 1 SO4 SO4 . F 4 SO4 A 1 404 5 SO4 SO4 . G 5 SOG A 1 405 7 SOG SOG . H 5 SOG A 1 406 8 SOG SOG . I 5 SOG A 1 407 10 SOG SOG . J 5 SOG A 1 408 13 SOG SOG . K 5 SOG A 1 409 14 SOG SOG . L 6 CL A 1 410 1 CL CL . M 7 PGW A 1 411 2 PGW PGW . N 2 NT5 B 1 401 401 NT5 UNL . O 3 PG4 B 1 402 501 PG4 PG4 . P 4 SO4 B 1 403 2 SO4 SO4 . Q 4 SO4 B 1 404 4 SO4 SO4 . R 5 SOG B 1 405 6 SOG SOG . S 5 SOG B 1 406 9 SOG SOG . T 5 SOG B 1 407 11 SOG SOG . U 5 SOG B 1 408 12 SOG SOG . V 7 PGW B 1 409 1 PGW PGW . W 8 HOH A 1 501 45 HOH HOH . W 8 HOH A 2 502 32 HOH HOH . W 8 HOH A 3 503 10 HOH HOH . W 8 HOH A 4 504 12 HOH HOH . W 8 HOH A 5 505 7 HOH HOH . W 8 HOH A 6 506 13 HOH HOH . W 8 HOH A 7 507 2 HOH HOH . W 8 HOH A 8 508 33 HOH HOH . W 8 HOH A 9 509 26 HOH HOH . W 8 HOH A 10 510 44 HOH HOH . W 8 HOH A 11 511 11 HOH HOH . W 8 HOH A 12 512 4 HOH HOH . W 8 HOH A 13 513 6 HOH HOH . W 8 HOH A 14 514 1 HOH HOH . W 8 HOH A 15 515 31 HOH HOH . W 8 HOH A 16 516 3 HOH HOH . W 8 HOH A 17 517 5 HOH HOH . W 8 HOH A 18 518 34 HOH HOH . W 8 HOH A 19 519 41 HOH HOH . W 8 HOH A 20 520 27 HOH HOH . X 8 HOH B 1 501 16 HOH HOH . X 8 HOH B 2 502 46 HOH HOH . X 8 HOH B 3 503 24 HOH HOH . X 8 HOH B 4 504 35 HOH HOH . X 8 HOH B 5 505 17 HOH HOH . X 8 HOH B 6 506 15 HOH HOH . X 8 HOH B 7 507 14 HOH HOH . X 8 HOH B 8 508 22 HOH HOH . X 8 HOH B 9 509 39 HOH HOH . X 8 HOH B 10 510 47 HOH HOH . X 8 HOH B 11 511 37 HOH HOH . X 8 HOH B 12 512 8 HOH HOH . X 8 HOH B 13 513 20 HOH HOH . X 8 HOH B 14 514 29 HOH HOH . X 8 HOH B 15 515 23 HOH HOH . X 8 HOH B 16 516 28 HOH HOH . X 8 HOH B 17 517 9 HOH HOH . X 8 HOH B 18 518 25 HOH HOH . X 8 HOH B 19 519 18 HOH HOH . X 8 HOH B 20 520 19 HOH HOH . X 8 HOH B 21 521 21 HOH HOH . X 8 HOH B 22 522 36 HOH HOH . X 8 HOH B 23 523 38 HOH HOH . X 8 HOH B 24 524 30 HOH HOH . X 8 HOH B 25 525 42 HOH HOH . X 8 HOH B 26 526 40 HOH HOH . X 8 HOH B 27 527 43 HOH HOH . X 8 HOH B 28 528 49 HOH HOH . X 8 HOH B 29 529 48 HOH HOH . X 8 HOH B 30 530 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NT5 . . . C 2 24.617 -4.571 94.589 1 53.97 ? C1 NT5 401 A 1 HETATM 2 C C10 NT5 . . . C 2 27.153 4.599 96.357 1 47.59 ? C10 NT5 401 A 1 HETATM 3 C C11 NT5 . . . C 2 26.109 4.068 95.598 1 44.72 ? C11 NT5 401 A 1 HETATM 4 C C12 NT5 . . . C 2 26.711 -2.267 94.965 1 47.2 ? C12 NT5 401 A 1 HETATM 5 C C13 NT5 . . . C 2 25.299 -2.277 97.095 1 49.56 ? C13 NT5 401 A 1 HETATM 6 C C14 NT5 . . . C 2 26.407 -1.692 97.943 1 48.46 ? C14 NT5 401 A 1 HETATM 7 C C15 NT5 . . . C 2 26.283 -0.348 98.313 1 48.63 ? C15 NT5 401 A 1 HETATM 8 C C16 NT5 . . . C 2 27.254 0.275 99.089 1 43.34 ? C16 NT5 401 A 1 HETATM 9 C C17 NT5 . . . C 2 28.362 -0.443 99.511 1 40.15 ? C17 NT5 401 A 1 HETATM 10 C C18 NT5 . . . C 2 28.494 -1.779 99.15 1 42.25 ? C18 NT5 401 A 1 HETATM 11 C C19 NT5 . . . C 2 27.54 -2.452 98.369 1 49.49 ? C19 NT5 401 A 1 HETATM 12 C C2 NT5 . . . C 2 24.351 -3.108 95.009 1 43.47 ? C2 NT5 401 A 1 HETATM 13 C C20 NT5 . . . C 2 27.786 -3.918 98.03 1 54.77 ? C20 NT5 401 A 1 HETATM 14 C C21 NT5 . . . C 2 26.946 -5.993 97.321 1 54.51 ? C21 NT5 401 A 1 HETATM 15 C C22 NT5 . . . C 2 28.207 -6.565 97.398 1 52.38 ? C22 NT5 401 A 1 HETATM 16 C C23 NT5 . . . C 2 29.236 -5.725 97.811 1 59.7 ? C23 NT5 401 A 1 HETATM 17 C C24 NT5 . . . C 2 27.101 1.731 99.48 1 45.07 ? C24 NT5 401 A 1 HETATM 18 C C3 NT5 . . . C 2 23.993 -2.231 93.789 1 46.92 ? C3 NT5 401 A 1 HETATM 19 C C4 NT5 . . . C 2 25.2 -1.847 92.929 1 50.85 ? C4 NT5 401 A 1 HETATM 20 C C5 NT5 . . . C 2 26.346 -1.322 93.8 1 49.27 ? C5 NT5 401 A 1 HETATM 21 C C6 NT5 . . . C 2 26.098 0.12 94.29 1 48.89 ? C6 NT5 401 A 1 HETATM 22 C C7 NT5 . . . C 2 27.151 1.982 95.478 1 40.17 ? C7 NT5 401 A 1 HETATM 23 C C8 NT5 . . . C 2 28.228 2.45 96.234 1 47.14 ? C8 NT5 401 A 1 HETATM 24 C C9 NT5 . . . C 2 28.228 3.774 96.678 1 46.91 ? C9 NT5 401 A 1 HETATM 25 F F1 NT5 . . . C 2 27.12 5.883 96.769 1 54.76 ? F1 NT5 401 A 1 HETATM 26 N N1 NT5 . . . C 2 26.091 2.785 95.158 1 42.49 ? N1 NT5 401 A 1 HETATM 27 N N2 NT5 . . . C 2 25.482 -2.518 95.755 1 47.85 ? N2 NT5 401 A 1 HETATM 28 N N3 NT5 . . . C 2 26.735 -4.692 97.633 1 53.62 ? N3 NT5 401 A 1 HETATM 29 N N4 NT5 . . . C 2 29.054 -4.412 98.128 1 60.47 ? N4 NT5 401 A 1 HETATM 30 O O1 NT5 . . . C 2 27.174 0.666 95.049 1 41.56 ? O1 NT5 401 A 1 HETATM 31 O O2 NT5 . . . C 2 24.236 -2.536 97.671 1 51.3 ? O2 NT5 401 A 1 HETATM 32 H H12 NT5 . . . C 2 23.785 -4.983 94.306 1 65.94 ? H12 NT5 401 A 1 HETATM 33 H H11 NT5 . . . C 2 24.981 -5.062 95.342 1 65.94 ? H11 NT5 401 A 1 HETATM 34 H H13 NT5 . . . C 2 25.251 -4.587 93.855 1 65.94 ? H13 NT5 401 A 1 HETATM 35 H H111 NT5 . . . C 2 25.392 4.62 95.384 1 54.84 ? H111 NT5 401 A 1 HETATM 36 H H122 NT5 . . . C 2 27.38 -1.847 95.528 1 57.82 ? H122 NT5 401 A 1 HETATM 37 H H121 NT5 . . . C 2 27.047 -3.106 94.611 1 57.82 ? H121 NT5 401 A 1 HETATM 38 H H151 NT5 . . . C 2 25.539 0.136 98.035 1 59.54 ? H151 NT5 401 A 1 HETATM 39 H H171 NT5 . . . C 2 29.014 -0.032 100.032 1 49.36 ? H171 NT5 401 A 1 HETATM 40 H H181 NT5 . . . C 2 29.245 -2.246 99.438 1 51.87 ? H181 NT5 401 A 1 HETATM 41 H H21 NT5 . . . C 2 23.582 -3.053 95.598 1 53.34 ? H21 NT5 401 A 1 HETATM 42 H H211 NT5 . . . C 2 26.227 -6.517 97.049 1 66.59 ? H211 NT5 401 A 1 HETATM 43 H H221 NT5 . . . C 2 28.357 -7.458 97.186 1 64.03 ? H221 NT5 401 A 1 HETATM 44 H H231 NT5 . . . C 2 30.094 -6.078 97.873 1 72.82 ? H231 NT5 401 A 1 HETATM 45 H H241 NT5 . . . C 2 26.175 2 99.371 1 55.26 ? H241 NT5 401 A 1 HETATM 46 H H243 NT5 . . . C 2 27.665 2.28 98.912 1 55.26 ? H243 NT5 401 A 1 HETATM 47 H H242 NT5 . . . C 2 27.364 1.847 100.406 1 55.26 ? H242 NT5 401 A 1 HETATM 48 H H32 NT5 . . . C 2 23.362 -2.717 93.236 1 57.48 ? H32 NT5 401 A 1 HETATM 49 H H31 NT5 . . . C 2 23.571 -1.418 94.108 1 57.48 ? H31 NT5 401 A 1 HETATM 50 H H42 NT5 . . . C 2 24.936 -1.157 92.3 1 62.2 ? H42 NT5 401 A 1 HETATM 51 H H41 NT5 . . . C 2 25.503 -2.627 92.439 1 62.2 ? H41 NT5 401 A 1 HETATM 52 H H51 NT5 . . . C 2 27.118 -1.327 93.213 1 60.31 ? H51 NT5 401 A 1 HETATM 53 H H61 NT5 . . . C 2 25.298 0.126 94.839 1 59.85 ? H61 NT5 401 A 1 HETATM 54 H H62 NT5 . . . C 2 25.945 0.686 93.518 1 59.85 ? H62 NT5 401 A 1 HETATM 55 H H81 NT5 . . . C 2 28.938 1.885 96.44 1 57.75 ? H81 NT5 401 A 1 HETATM 56 H H91 NT5 . . . C 2 28.938 4.101 97.182 1 57.48 ? H91 NT5 401 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 56 #