data_6TP6 # _model_server_result.job_id pm9DxFoKv718uDxfLtHlrA _model_server_result.datetime_utc '2024-11-26 03:02:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tp6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":401}' # _entry.id 6TP6 # _exptl.entry_id 6TP6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 420.479 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R},5~{R})-5-[(5-fluoranylpyridin-2-yl)oxymethyl]-2-methyl-piperidin-1-yl]-(5-methyl-2-pyrimidin-2-yl-phenyl)methanone' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.12 _cell.angle_gamma 90 _cell.entry_id 6TP6 _cell.length_a 59.892 _cell.length_b 146.202 _cell.length_c 72.328 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TP6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,W 1 1 B,N,O,P,Q,R,S,T,U,V,X 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 95 A CYS 119 1_555 A SG CYS 178 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 95 B CYS 119 1_555 B SG CYS 178 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C24 H25 F N4 O2' _chem_comp.formula_weight 420.479 _chem_comp.id NT5 _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R},5~{R})-5-[(5-fluoranylpyridin-2-yl)oxymethyl]-2-methyl-piperidin-1-yl]-(5-methyl-2-pyrimidin-2-yl-phenyl)methanone' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C3 NT5 sing 237 n n C4 C5 NT5 sing 238 n n C3 C2 NT5 sing 239 n n C5 C6 NT5 sing 240 n n C5 C12 NT5 sing 241 n n C6 O1 NT5 sing 242 n n C1 C2 NT5 sing 243 n n C12 N2 NT5 sing 244 n n C2 N2 NT5 sing 245 n n O1 C7 NT5 sing 246 n n N1 C7 NT5 doub 247 n y N1 C11 NT5 sing 248 n y C7 C8 NT5 sing 249 n y C11 C10 NT5 doub 250 n y N2 C13 NT5 sing 251 n n C8 C9 NT5 doub 252 n y C10 C9 NT5 sing 253 n y C10 F1 NT5 sing 254 n n C13 O2 NT5 doub 255 n n C13 C14 NT5 sing 256 n n C21 C22 NT5 doub 257 n y C21 N3 NT5 sing 258 n y C22 C23 NT5 sing 259 n y N3 C20 NT5 doub 260 n y C23 N4 NT5 doub 261 n y C14 C15 NT5 doub 262 n y C14 C19 NT5 sing 263 n y C20 N4 NT5 sing 264 n y C20 C19 NT5 sing 265 n n C15 C16 NT5 sing 266 n y C19 C18 NT5 doub 267 n y C16 C24 NT5 sing 268 n n C16 C17 NT5 doub 269 n y C18 C17 NT5 sing 270 n y C1 H12 NT5 sing 271 n n C1 H11 NT5 sing 272 n n C1 H13 NT5 sing 273 n n C11 H111 NT5 sing 274 n n C12 H122 NT5 sing 275 n n C12 H121 NT5 sing 276 n n C15 H151 NT5 sing 277 n n C17 H171 NT5 sing 278 n n C18 H181 NT5 sing 279 n n C2 H21 NT5 sing 280 n n C21 H211 NT5 sing 281 n n C22 H221 NT5 sing 282 n n C23 H231 NT5 sing 283 n n C24 H241 NT5 sing 284 n n C24 H243 NT5 sing 285 n n C24 H242 NT5 sing 286 n n C3 H32 NT5 sing 287 n n C3 H31 NT5 sing 288 n n C4 H42 NT5 sing 289 n n C4 H41 NT5 sing 290 n n C5 H51 NT5 sing 291 n n C6 H61 NT5 sing 292 n n C6 H62 NT5 sing 293 n n C8 H81 NT5 sing 294 n n C9 H91 NT5 sing 295 n n # _atom_sites.entry_id 6TP6 _atom_sites.fract_transf_matrix[1][1] 0.016697 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00645 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00684 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014822 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NT5 A 1 401 401 NT5 UNL . D 3 PG4 A 1 402 501 PG4 PG4 . E 4 SO4 A 1 403 1 SO4 SO4 . F 4 SO4 A 1 404 5 SO4 SO4 . G 5 SOG A 1 405 7 SOG SOG . H 5 SOG A 1 406 8 SOG SOG . I 5 SOG A 1 407 10 SOG SOG . J 5 SOG A 1 408 13 SOG SOG . K 5 SOG A 1 409 14 SOG SOG . L 6 CL A 1 410 1 CL CL . M 7 PGW A 1 411 2 PGW PGW . N 2 NT5 B 1 401 401 NT5 UNL . O 3 PG4 B 1 402 501 PG4 PG4 . P 4 SO4 B 1 403 2 SO4 SO4 . Q 4 SO4 B 1 404 4 SO4 SO4 . R 5 SOG B 1 405 6 SOG SOG . S 5 SOG B 1 406 9 SOG SOG . T 5 SOG B 1 407 11 SOG SOG . U 5 SOG B 1 408 12 SOG SOG . V 7 PGW B 1 409 1 PGW PGW . W 8 HOH A 1 501 45 HOH HOH . W 8 HOH A 2 502 32 HOH HOH . W 8 HOH A 3 503 10 HOH HOH . W 8 HOH A 4 504 12 HOH HOH . W 8 HOH A 5 505 7 HOH HOH . W 8 HOH A 6 506 13 HOH HOH . W 8 HOH A 7 507 2 HOH HOH . W 8 HOH A 8 508 33 HOH HOH . W 8 HOH A 9 509 26 HOH HOH . W 8 HOH A 10 510 44 HOH HOH . W 8 HOH A 11 511 11 HOH HOH . W 8 HOH A 12 512 4 HOH HOH . W 8 HOH A 13 513 6 HOH HOH . W 8 HOH A 14 514 1 HOH HOH . W 8 HOH A 15 515 31 HOH HOH . W 8 HOH A 16 516 3 HOH HOH . W 8 HOH A 17 517 5 HOH HOH . W 8 HOH A 18 518 34 HOH HOH . W 8 HOH A 19 519 41 HOH HOH . W 8 HOH A 20 520 27 HOH HOH . X 8 HOH B 1 501 16 HOH HOH . X 8 HOH B 2 502 46 HOH HOH . X 8 HOH B 3 503 24 HOH HOH . X 8 HOH B 4 504 35 HOH HOH . X 8 HOH B 5 505 17 HOH HOH . X 8 HOH B 6 506 15 HOH HOH . X 8 HOH B 7 507 14 HOH HOH . X 8 HOH B 8 508 22 HOH HOH . X 8 HOH B 9 509 39 HOH HOH . X 8 HOH B 10 510 47 HOH HOH . X 8 HOH B 11 511 37 HOH HOH . X 8 HOH B 12 512 8 HOH HOH . X 8 HOH B 13 513 20 HOH HOH . X 8 HOH B 14 514 29 HOH HOH . X 8 HOH B 15 515 23 HOH HOH . X 8 HOH B 16 516 28 HOH HOH . X 8 HOH B 17 517 9 HOH HOH . X 8 HOH B 18 518 25 HOH HOH . X 8 HOH B 19 519 18 HOH HOH . X 8 HOH B 20 520 19 HOH HOH . X 8 HOH B 21 521 21 HOH HOH . X 8 HOH B 22 522 36 HOH HOH . X 8 HOH B 23 523 38 HOH HOH . X 8 HOH B 24 524 30 HOH HOH . X 8 HOH B 25 525 42 HOH HOH . X 8 HOH B 26 526 40 HOH HOH . X 8 HOH B 27 527 43 HOH HOH . X 8 HOH B 28 528 49 HOH HOH . X 8 HOH B 29 529 48 HOH HOH . X 8 HOH B 30 530 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NT5 . . . N 2 25.184 -32.007 86.906 1 58.26 ? C1 NT5 401 B 1 HETATM 2 C C10 NT5 . . . N 2 27.187 -40.474 82.499 1 61.29 ? C10 NT5 401 B 1 HETATM 3 C C11 NT5 . . . N 2 26.74 -40.159 83.784 1 64.73 ? C11 NT5 401 B 1 HETATM 4 C C12 NT5 . . . N 2 26.648 -33.814 84.847 1 62.92 ? C12 NT5 401 B 1 HETATM 5 C C13 NT5 . . . N 2 24.192 -34.253 84.341 1 51.04 ? C13 NT5 401 B 1 HETATM 6 C C14 NT5 . . . N 2 24.486 -34.65 82.913 1 58.25 ? C14 NT5 401 B 1 HETATM 7 C C15 NT5 . . . N 2 24.427 -36.014 82.603 1 68.37 ? C15 NT5 401 B 1 HETATM 8 C C16 NT5 . . . N 2 24.683 -36.472 81.316 1 68.46 ? C16 NT5 401 B 1 HETATM 9 C C17 NT5 . . . N 2 24.999 -35.568 80.315 1 66.04 ? C17 NT5 401 B 1 HETATM 10 C C18 NT5 . . . N 2 25.058 -34.211 80.612 1 67.34 ? C18 NT5 401 B 1 HETATM 11 C C19 NT5 . . . N 2 24.807 -33.697 81.896 1 63.78 ? C19 NT5 401 B 1 HETATM 12 C C2 NT5 . . . N 2 24.859 -33.478 86.567 1 54.36 ? C2 NT5 401 B 1 HETATM 13 C C20 NT5 . . . N 2 24.908 -32.187 82.098 1 59.36 ? C20 NT5 401 B 1 HETATM 14 C C21 NT5 . . . N 2 24.414 -30.269 83.358 1 57.15 ? C21 NT5 401 B 1 HETATM 15 C C22 NT5 . . . N 2 25.105 -29.467 82.46 1 61.88 ? C22 NT5 401 B 1 HETATM 16 C C23 NT5 . . . N 2 25.686 -30.116 81.377 1 62.29 ? C23 NT5 401 B 1 HETATM 17 C C24 NT5 . . . N 2 24.612 -37.956 81.016 1 73.24 ? C24 NT5 401 B 1 HETATM 18 C C3 NT5 . . . N 2 25.571 -34.458 87.53 1 57.46 ? C3 NT5 401 B 1 HETATM 19 C C4 NT5 . . . N 2 27.067 -34.626 87.242 1 60.94 ? C4 NT5 401 B 1 HETATM 20 C C5 NT5 . . . N 2 27.333 -34.864 85.749 1 60.98 ? C5 NT5 401 B 1 HETATM 21 C C6 NT5 . . . N 2 26.987 -36.298 85.302 1 50.62 ? C6 NT5 401 B 1 HETATM 22 C C7 NT5 . . . N 2 27.39 -37.932 83.537 1 51.97 ? C7 NT5 401 B 1 HETATM 23 C C8 NT5 . . . N 2 27.856 -38.179 82.246 1 56.07 ? C8 NT5 401 B 1 HETATM 24 C C9 NT5 . . . N 2 27.754 -39.467 81.722 1 58.58 ? C9 NT5 401 B 1 HETATM 25 F F1 NT5 . . . N 2 27.075 -41.728 82.016 1 67.32 ? F1 NT5 401 B 1 HETATM 26 N N1 NT5 . . . N 2 26.832 -38.912 84.311 1 61.36 ? N1 NT5 401 B 1 HETATM 27 N N2 NT5 . . . N 2 25.205 -33.87 85.183 1 53.7 ? N2 NT5 401 B 1 HETATM 28 N N3 NT5 . . . N 2 24.314 -31.61 83.185 1 58.15 ? N3 NT5 401 B 1 HETATM 29 N N4 NT5 . . . N 2 25.604 -31.461 81.177 1 56.68 ? N4 NT5 401 B 1 HETATM 30 O O1 NT5 . . . N 2 27.51 -36.645 84.025 1 51.44 ? O1 NT5 401 B 1 HETATM 31 O O2 NT5 . . . N 2 23.009 -34.272 84.692 1 54.25 ? O2 NT5 401 B 1 HETATM 32 H H12 NT5 . . . N 2 24.733 -31.758 87.728 1 71.09 ? H12 NT5 401 B 1 HETATM 33 H H11 NT5 . . . N 2 24.881 -31.434 86.184 1 71.09 ? H11 NT5 401 B 1 HETATM 34 H H13 NT5 . . . N 2 26.142 -31.906 87.02 1 71.09 ? H13 NT5 401 B 1 HETATM 35 H H111 NT5 . . . N 2 26.363 -40.833 84.301 1 78.86 ? H111 NT5 401 B 1 HETATM 36 H H122 NT5 . . . N 2 26.782 -34.038 83.913 1 76.68 ? H122 NT5 401 B 1 HETATM 37 H H121 NT5 . . . N 2 27.001 -32.93 85.037 1 76.68 ? H121 NT5 401 B 1 HETATM 38 H H151 NT5 . . . N 2 24.214 -36.625 83.271 1 83.23 ? H151 NT5 401 B 1 HETATM 39 H H171 NT5 . . . N 2 25.17 -35.867 79.451 1 80.43 ? H171 NT5 401 B 1 HETATM 40 H H181 NT5 . . . N 2 25.274 -33.616 79.931 1 81.99 ? H181 NT5 401 B 1 HETATM 41 H H21 NT5 . . . N 2 23.904 -33.614 86.667 1 66.42 ? H21 NT5 401 B 1 HETATM 42 H H211 NT5 . . . N 2 24.01 -29.877 84.098 1 69.76 ? H211 NT5 401 B 1 HETATM 43 H H221 NT5 . . . N 2 25.175 -28.547 82.576 1 75.44 ? H221 NT5 401 B 1 HETATM 44 H H231 NT5 . . . N 2 26.155 -29.606 80.756 1 75.93 ? H231 NT5 401 B 1 HETATM 45 H H241 NT5 . . . N 2 24.401 -38.44 81.83 1 89.07 ? H241 NT5 401 B 1 HETATM 46 H H243 NT5 . . . N 2 25.467 -38.257 80.672 1 89.07 ? H243 NT5 401 B 1 HETATM 47 H H242 NT5 . . . N 2 23.921 -38.119 80.355 1 89.07 ? H242 NT5 401 B 1 HETATM 48 H H32 NT5 . . . N 2 25.466 -34.13 88.437 1 70.14 ? H32 NT5 401 B 1 HETATM 49 H H31 NT5 . . . N 2 25.143 -35.326 87.458 1 70.14 ? H31 NT5 401 B 1 HETATM 50 H H42 NT5 . . . N 2 27.403 -35.383 87.747 1 74.31 ? H42 NT5 401 B 1 HETATM 51 H H41 NT5 . . . N 2 27.534 -33.823 87.521 1 74.31 ? H41 NT5 401 B 1 HETATM 52 H H51 NT5 . . . N 2 28.289 -34.73 85.649 1 74.35 ? H51 NT5 401 B 1 HETATM 53 H H61 NT5 . . . N 2 26.022 -36.39 85.277 1 61.93 ? H61 NT5 401 B 1 HETATM 54 H H62 NT5 . . . N 2 27.338 -36.92 85.959 1 61.93 ? H62 NT5 401 B 1 HETATM 55 H H81 NT5 . . . N 2 28.23 -37.493 81.741 1 68.47 ? H81 NT5 401 B 1 HETATM 56 H H91 NT5 . . . N 2 28.06 -39.651 80.864 1 71.48 ? H91 NT5 401 B 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 56 #