data_6TP6
#
_model_server_result.job_id            qdhPcan0DEwU0Ox_7cNpeQ 
_model_server_result.datetime_utc      '2024-10-25 20:27:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6tp6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":406}' 
#
_entry.id    6TP6 
#
_exptl.entry_id    6TP6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              308.434 
_entity.id                          5 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl 1-thio-beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.12 
_cell.angle_gamma         90 
_cell.entry_id            6TP6 
_cell.length_a            59.892 
_cell.length_b            146.202 
_cell.length_c            72.328 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6TP6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,W 1 1 
B,N,O,P,Q,R,S,T,U,V,X 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 R N N 
? 5 S N N 
? 5 T N N 
? 5 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 95 A CYS 119 1_555 A SG CYS 178 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 B SG CYS 95 B CYS 119 1_555 B SG CYS 178 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
#
_chem_comp.formula           'C14 H28 O5 S' 
_chem_comp.formula_weight    308.434 
_chem_comp.id                SOG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'octyl 1-thio-beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     '2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4,5-TRIOL;1-S-OCTYL-BETA-D-THIOGLUCOSIDE;octyl 1-thio-beta-D-glucoside;octyl 1-thio-D-glucoside;octyl 1-thio-glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 SOG sing 510 n n 
C1 S1 SOG sing 511 n n 
C1 O5 SOG sing 512 n n 
C1 H1 SOG sing 513 n n 
C2 C3 SOG sing 514 n n 
C2 O2 SOG sing 515 n n 
C2 H2 SOG sing 516 n n 
C3 C4 SOG sing 517 n n 
C3 O3 SOG sing 518 n n 
C3 H3 SOG sing 519 n n 
C4 C5 SOG sing 520 n n 
C4 O4 SOG sing 521 n n 
C4 H4 SOG sing 522 n n 
C5 C6 SOG sing 523 n n 
C5 O5 SOG sing 524 n n 
C5 H5 SOG sing 525 n n 
C6 O6 SOG sing 526 n n 
C6 H61 SOG sing 527 n n 
C6 H62 SOG sing 528 n n 
C1' C2' SOG sing 529 n n 
C1' S1 SOG sing 530 n n 
C1' "H1'1" SOG sing 531 n n 
C1' "H1'2" SOG sing 532 n n 
C2' C3' SOG sing 533 n n 
C2' "H2'1" SOG sing 534 n n 
C2' "H2'2" SOG sing 535 n n 
C3' C4' SOG sing 536 n n 
C3' "H3'1" SOG sing 537 n n 
C3' "H3'2" SOG sing 538 n n 
C4' C5' SOG sing 539 n n 
C4' "H4'1" SOG sing 540 n n 
C4' "H4'2" SOG sing 541 n n 
C5' C6' SOG sing 542 n n 
C5' "H5'1" SOG sing 543 n n 
C5' "H5'2" SOG sing 544 n n 
C6' C7' SOG sing 545 n n 
C6' "H6'1" SOG sing 546 n n 
C6' "H6'2" SOG sing 547 n n 
C7' C8' SOG sing 548 n n 
C7' "H7'1" SOG sing 549 n n 
C7' "H7'2" SOG sing 550 n n 
C8' "H8'1" SOG sing 551 n n 
C8' "H8'2" SOG sing 552 n n 
C8' "H8'3" SOG sing 553 n n 
O2 HO2 SOG sing 554 n n 
O3 HO3 SOG sing 555 n n 
O4 HO4 SOG sing 556 n n 
O6 HO6 SOG sing 557 n n 
#
_atom_sites.entry_id                     6TP6 
_atom_sites.fract_transf_matrix[1][1]    0.016697 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00645 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00684 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014822 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NT5 A 1 401 401 NT5 UNL . 
D 3 PG4 A 1 402 501 PG4 PG4 . 
E 4 SO4 A 1 403 1 SO4 SO4 . 
F 4 SO4 A 1 404 5 SO4 SO4 . 
G 5 SOG A 1 405 7 SOG SOG . 
H 5 SOG A 1 406 8 SOG SOG . 
I 5 SOG A 1 407 10 SOG SOG . 
J 5 SOG A 1 408 13 SOG SOG . 
K 5 SOG A 1 409 14 SOG SOG . 
L 6 CL A 1 410 1 CL CL . 
M 7 PGW A 1 411 2 PGW PGW . 
N 2 NT5 B 1 401 401 NT5 UNL . 
O 3 PG4 B 1 402 501 PG4 PG4 . 
P 4 SO4 B 1 403 2 SO4 SO4 . 
Q 4 SO4 B 1 404 4 SO4 SO4 . 
R 5 SOG B 1 405 6 SOG SOG . 
S 5 SOG B 1 406 9 SOG SOG . 
T 5 SOG B 1 407 11 SOG SOG . 
U 5 SOG B 1 408 12 SOG SOG . 
V 7 PGW B 1 409 1 PGW PGW . 
W 8 HOH A 1 501 45 HOH HOH . 
W 8 HOH A 2 502 32 HOH HOH . 
W 8 HOH A 3 503 10 HOH HOH . 
W 8 HOH A 4 504 12 HOH HOH . 
W 8 HOH A 5 505 7 HOH HOH . 
W 8 HOH A 6 506 13 HOH HOH . 
W 8 HOH A 7 507 2 HOH HOH . 
W 8 HOH A 8 508 33 HOH HOH . 
W 8 HOH A 9 509 26 HOH HOH . 
W 8 HOH A 10 510 44 HOH HOH . 
W 8 HOH A 11 511 11 HOH HOH . 
W 8 HOH A 12 512 4 HOH HOH . 
W 8 HOH A 13 513 6 HOH HOH . 
W 8 HOH A 14 514 1 HOH HOH . 
W 8 HOH A 15 515 31 HOH HOH . 
W 8 HOH A 16 516 3 HOH HOH . 
W 8 HOH A 17 517 5 HOH HOH . 
W 8 HOH A 18 518 34 HOH HOH . 
W 8 HOH A 19 519 41 HOH HOH . 
W 8 HOH A 20 520 27 HOH HOH . 
X 8 HOH B 1 501 16 HOH HOH . 
X 8 HOH B 2 502 46 HOH HOH . 
X 8 HOH B 3 503 24 HOH HOH . 
X 8 HOH B 4 504 35 HOH HOH . 
X 8 HOH B 5 505 17 HOH HOH . 
X 8 HOH B 6 506 15 HOH HOH . 
X 8 HOH B 7 507 14 HOH HOH . 
X 8 HOH B 8 508 22 HOH HOH . 
X 8 HOH B 9 509 39 HOH HOH . 
X 8 HOH B 10 510 47 HOH HOH . 
X 8 HOH B 11 511 37 HOH HOH . 
X 8 HOH B 12 512 8 HOH HOH . 
X 8 HOH B 13 513 20 HOH HOH . 
X 8 HOH B 14 514 29 HOH HOH . 
X 8 HOH B 15 515 23 HOH HOH . 
X 8 HOH B 16 516 28 HOH HOH . 
X 8 HOH B 17 517 9 HOH HOH . 
X 8 HOH B 18 518 25 HOH HOH . 
X 8 HOH B 19 519 18 HOH HOH . 
X 8 HOH B 20 520 19 HOH HOH . 
X 8 HOH B 21 521 21 HOH HOH . 
X 8 HOH B 22 522 36 HOH HOH . 
X 8 HOH B 23 523 38 HOH HOH . 
X 8 HOH B 24 524 30 HOH HOH . 
X 8 HOH B 25 525 42 HOH HOH . 
X 8 HOH B 26 526 40 HOH HOH . 
X 8 HOH B 27 527 43 HOH HOH . 
X 8 HOH B 28 528 49 HOH HOH . 
X 8 HOH B 29 529 48 HOH HOH . 
X 8 HOH B 30 530 50 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 SOG . . . S 5 12.253 -24.733 99.265 1 104.16 ? C1 SOG 406 B 1 
HETATM 2 C C2 SOG . . . S 5 11.041 -25.27 100.018 1 109.02 ? C2 SOG 406 B 1 
HETATM 3 C C3 SOG . . . S 5 11.201 -25.038 101.518 1 108.22 ? C3 SOG 406 B 1 
HETATM 4 C C4 SOG . . . S 5 12.545 -25.536 102.008 1 104.21 ? C4 SOG 406 B 1 
HETATM 5 C C5 SOG . . . S 5 13.649 -24.91 101.171 1 98.13 ? C5 SOG 406 B 1 
HETATM 6 C C6 SOG . . . S 5 15.034 -25.383 101.574 1 98.14 ? C6 SOG 406 B 1 
HETATM 7 C C1' SOG . . . S 5 13.82 -24.759 96.971 1 91.31 ? C1' SOG 406 B 1 
HETATM 8 C C2' SOG . . . S 5 14.136 -23.306 97.23 1 78.36 ? C2' SOG 406 B 1 
HETATM 9 C C3' SOG . . . S 5 15.542 -23.097 97.739 1 69.16 ? C3' SOG 406 B 1 
HETATM 10 C C4' SOG . . . S 5 16.506 -22.569 96.705 1 55.82 ? C4' SOG 406 B 1 
HETATM 11 C C5' SOG . . . S 5 17.891 -22.31 97.253 1 41.25 ? C5' SOG 406 B 1 
HETATM 12 C C6' SOG . . . S 5 18.8 -21.526 96.338 1 46.71 ? C6' SOG 406 B 1 
HETATM 13 C C7' SOG . . . S 5 20.162 -21.234 96.919 1 54.89 ? C7' SOG 406 B 1 
HETATM 14 C C8' SOG . . . S 5 21.015 -20.345 96.044 1 54.91 ? C8' SOG 406 B 1 
HETATM 15 S S1 SOG . . . S 5 12.128 -25.162 97.515 1 101.39 ? S1 SOG 406 B 1 
HETATM 16 O O2 SOG . . . S 5 9.859 -24.617 99.568 1 110.24 ? O2 SOG 406 B 1 
HETATM 17 O O3 SOG . . . S 5 10.14 -25.668 102.233 1 111.09 ? O3 SOG 406 B 1 
HETATM 18 O O4 SOG . . . S 5 12.738 -25.192 103.377 1 104.11 ? O4 SOG 406 B 1 
HETATM 19 O O5 SOG . . . S 5 13.457 -25.269 99.794 1 99.02 ? O5 SOG 406 B 1 
HETATM 20 O O6 SOG . . . S 5 15.304 -25.066 102.939 1 105.71 ? O6 SOG 406 B 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           342 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           20 
#