data_6TP6 # _model_server_result.job_id 1RHs02p9GpE4OH7dE--Bjg _model_server_result.datetime_utc '2024-11-26 04:06:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tp6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":409}' # _entry.id 6TP6 # _exptl.entry_id 6TP6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 749.007 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.12 _cell.angle_gamma 90 _cell.entry_id 6TP6 _cell.length_a 59.892 _cell.length_b 146.202 _cell.length_c 72.328 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TP6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,W 1 1 B,N,O,P,Q,R,S,T,U,V,X 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 M N N ? 7 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 95 A CYS 119 1_555 A SG CYS 178 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 95 B CYS 119 1_555 B SG CYS 178 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C40 H77 O10 P' _chem_comp.formula_weight 749.007 _chem_comp.id PGW _chem_comp.mon_nstd_flag . _chem_comp.name '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Palmitoyl-2-Oleoyl-sn-Glycero-3-[Phospho-(1-glycerol)];PHOSPHATIDYLGLYCEROL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAD C05 PGW sing 326 n n CAD HAD PGW sing 327 n n CAD HADA PGW sing 328 n n OAE CAD PGW sing 329 n n OAE HOAE PGW sing 330 n n OAF C05 PGW sing 331 n n OAF HOAF PGW sing 332 n n P O13 PGW sing 333 n n P O11 PGW sing 334 n n C01 O03 PGW sing 335 n n C01 C02 PGW sing 336 n n C01 H01 PGW sing 337 n n C01 H01A PGW sing 338 n n C1 C2 PGW sing 339 n n O01 C1 PGW sing 340 n n C02 O01 PGW sing 341 n n C02 H02 PGW sing 342 n n C2 C3 PGW sing 343 n n C2 H2 PGW sing 344 n n C2 H2A PGW sing 345 n n O02 C1 PGW doub 346 n n C03 C02 PGW sing 347 n n C03 H03 PGW sing 348 n n C03 H03A PGW sing 349 n n C3 C4 PGW sing 350 n n C3 H3 PGW sing 351 n n C3 H3A PGW sing 352 n n C04 C05 PGW sing 353 n n C04 O12 PGW sing 354 n n C04 H04 PGW sing 355 n n C04 H04A PGW sing 356 n n C4 C5 PGW sing 357 n n C4 H4 PGW sing 358 n n C4 H4A PGW sing 359 n n O04 C19 PGW doub 360 n n C05 H05 PGW sing 361 n n C5 C6 PGW sing 362 n n C5 H5 PGW sing 363 n n C5 H5A PGW sing 364 n n C06 C07 PGW sing 365 n n C06 H06 PGW sing 366 n n C06 H06A PGW sing 367 n n C6 C7 PGW sing 368 n n C6 H6 PGW sing 369 n n C6 H6A PGW sing 370 n n C07 H07 PGW sing 371 n n C07 H07A PGW sing 372 n n C7 C8 PGW sing 373 n n C7 H7 PGW sing 374 n n C7 H7A PGW sing 375 n n C08 C07 PGW sing 376 n n C08 H08 PGW sing 377 n n C08 H08A PGW sing 378 n n C8 C9 PGW sing 379 n n C8 H8 PGW sing 380 n n C8 H8A PGW sing 381 n n C09 C08 PGW sing 382 n n C09 C11 PGW sing 383 n n C09 H09 PGW sing 384 n n C09 H09A PGW sing 385 n n C9 C10 PGW doub 386 z n C10 C06 PGW sing 387 n n C11 H11 PGW sing 388 n n C11 H11A PGW sing 389 n n O11 C03 PGW sing 390 n n C12 C11 PGW sing 391 n n C12 H12 PGW sing 392 n n C12 H12A PGW sing 393 n n O12 P PGW sing 394 n n C13 C12 PGW sing 395 n n C13 C14 PGW sing 396 n n C13 H13 PGW sing 397 n n C13 H13A PGW sing 398 n n O13 HO13 PGW sing 399 n n C14 H14 PGW sing 400 n n C14 H14A PGW sing 401 n n C14 H14B PGW sing 402 n n O14 P PGW doub 403 n n C15 C16 PGW sing 404 n n C15 H15 PGW sing 405 n n C15 H15A PGW sing 406 n n C16 H16 PGW sing 407 n n C16 H16A PGW sing 408 n n C17 C16 PGW sing 409 n n C17 C18 PGW sing 410 n n C17 H17 PGW sing 411 n n C17 H17A PGW sing 412 n n C18 C28 PGW sing 413 n n C18 H18 PGW sing 414 n n C18 H18A PGW sing 415 n n C19 O03 PGW sing 416 n n C19 C20 PGW sing 417 n n C20 C21 PGW sing 418 n n C20 H20 PGW sing 419 n n C20 H20A PGW sing 420 n n C21 C22 PGW sing 421 n n C21 H21 PGW sing 422 n n C21 H21A PGW sing 423 n n C22 C23 PGW sing 424 n n C22 H22 PGW sing 425 n n C22 H22A PGW sing 426 n n C23 C24 PGW sing 427 n n C23 H23 PGW sing 428 n n C23 H23A PGW sing 429 n n C24 C25 PGW sing 430 n n C24 H24 PGW sing 431 n n C24 H24A PGW sing 432 n n C25 C26 PGW sing 433 n n C25 H25 PGW sing 434 n n C25 H25A PGW sing 435 n n C26 C27 PGW sing 436 n n C26 H26 PGW sing 437 n n C26 H26A PGW sing 438 n n C27 C15 PGW sing 439 n n C27 H27 PGW sing 440 n n C27 H27A PGW sing 441 n n C28 H28 PGW sing 442 n n C28 H28A PGW sing 443 n n C29 H29 PGW sing 444 n n C29 H29A PGW sing 445 n n C29 H29B PGW sing 446 n n C30 C28 PGW sing 447 n n C30 C29 PGW sing 448 n n C30 H30 PGW sing 449 n n C30 H30A PGW sing 450 n n C9 H9 PGW sing 451 n n C10 H10 PGW sing 452 n n # _atom_sites.entry_id 6TP6 _atom_sites.fract_transf_matrix[1][1] 0.016697 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00645 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00684 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014822 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NT5 A 1 401 401 NT5 UNL . D 3 PG4 A 1 402 501 PG4 PG4 . E 4 SO4 A 1 403 1 SO4 SO4 . F 4 SO4 A 1 404 5 SO4 SO4 . G 5 SOG A 1 405 7 SOG SOG . H 5 SOG A 1 406 8 SOG SOG . I 5 SOG A 1 407 10 SOG SOG . J 5 SOG A 1 408 13 SOG SOG . K 5 SOG A 1 409 14 SOG SOG . L 6 CL A 1 410 1 CL CL . M 7 PGW A 1 411 2 PGW PGW . N 2 NT5 B 1 401 401 NT5 UNL . O 3 PG4 B 1 402 501 PG4 PG4 . P 4 SO4 B 1 403 2 SO4 SO4 . Q 4 SO4 B 1 404 4 SO4 SO4 . R 5 SOG B 1 405 6 SOG SOG . S 5 SOG B 1 406 9 SOG SOG . T 5 SOG B 1 407 11 SOG SOG . U 5 SOG B 1 408 12 SOG SOG . V 7 PGW B 1 409 1 PGW PGW . W 8 HOH A 1 501 45 HOH HOH . W 8 HOH A 2 502 32 HOH HOH . W 8 HOH A 3 503 10 HOH HOH . W 8 HOH A 4 504 12 HOH HOH . W 8 HOH A 5 505 7 HOH HOH . W 8 HOH A 6 506 13 HOH HOH . W 8 HOH A 7 507 2 HOH HOH . W 8 HOH A 8 508 33 HOH HOH . W 8 HOH A 9 509 26 HOH HOH . W 8 HOH A 10 510 44 HOH HOH . W 8 HOH A 11 511 11 HOH HOH . W 8 HOH A 12 512 4 HOH HOH . W 8 HOH A 13 513 6 HOH HOH . W 8 HOH A 14 514 1 HOH HOH . W 8 HOH A 15 515 31 HOH HOH . W 8 HOH A 16 516 3 HOH HOH . W 8 HOH A 17 517 5 HOH HOH . W 8 HOH A 18 518 34 HOH HOH . W 8 HOH A 19 519 41 HOH HOH . W 8 HOH A 20 520 27 HOH HOH . X 8 HOH B 1 501 16 HOH HOH . X 8 HOH B 2 502 46 HOH HOH . X 8 HOH B 3 503 24 HOH HOH . X 8 HOH B 4 504 35 HOH HOH . X 8 HOH B 5 505 17 HOH HOH . X 8 HOH B 6 506 15 HOH HOH . X 8 HOH B 7 507 14 HOH HOH . X 8 HOH B 8 508 22 HOH HOH . X 8 HOH B 9 509 39 HOH HOH . X 8 HOH B 10 510 47 HOH HOH . X 8 HOH B 11 511 37 HOH HOH . X 8 HOH B 12 512 8 HOH HOH . X 8 HOH B 13 513 20 HOH HOH . X 8 HOH B 14 514 29 HOH HOH . X 8 HOH B 15 515 23 HOH HOH . X 8 HOH B 16 516 28 HOH HOH . X 8 HOH B 17 517 9 HOH HOH . X 8 HOH B 18 518 25 HOH HOH . X 8 HOH B 19 519 18 HOH HOH . X 8 HOH B 20 520 19 HOH HOH . X 8 HOH B 21 521 21 HOH HOH . X 8 HOH B 22 522 36 HOH HOH . X 8 HOH B 23 523 38 HOH HOH . X 8 HOH B 24 524 30 HOH HOH . X 8 HOH B 25 525 42 HOH HOH . X 8 HOH B 26 526 40 HOH HOH . X 8 HOH B 27 527 43 HOH HOH . X 8 HOH B 28 528 49 HOH HOH . X 8 HOH B 29 529 48 HOH HOH . X 8 HOH B 30 530 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAD PGW . . . V 7 24.908 -0.924 72.128 1 133.98 ? CAD PGW 409 B 1 HETATM 2 O OAE PGW . . . V 7 24.54 0.233 71.383 1 137.29 ? OAE PGW 409 B 1 HETATM 3 O OAF PGW . . . V 7 22.58 -1.494 72.381 1 134.88 ? OAF PGW 409 B 1 HETATM 4 P P PGW . . . V 7 22.209 -0.455 76.491 1 126.48 ? P PGW 409 B 1 HETATM 5 C C01 PGW . . . V 7 20.529 -4.523 78.965 1 95.09 ? C01 PGW 409 B 1 HETATM 6 C C1 PGW . . . V 7 24.138 -4.1 78.743 1 74.9 ? C1 PGW 409 B 1 HETATM 7 O O01 PGW . . . V 7 22.901 -4.599 78.589 1 84.49 ? O01 PGW 409 B 1 HETATM 8 C C02 PGW . . . V 7 21.773 -3.692 78.746 1 95.97 ? C02 PGW 409 B 1 HETATM 9 C C2 PGW . . . V 7 25.253 -5.005 78.279 1 65.72 ? C2 PGW 409 B 1 HETATM 10 O O02 PGW . . . V 7 24.319 -3.021 79.244 1 82.86 ? O02 PGW 409 B 1 HETATM 11 C C03 PGW . . . V 7 21.683 -2.84 77.498 1 110.61 ? C03 PGW 409 B 1 HETATM 12 C C3 PGW . . . V 7 26.166 -5.413 79.396 1 58.36 ? C3 PGW 409 B 1 HETATM 13 O O03 PGW . . . V 7 20.598 -5.215 80.232 1 96.74 ? O03 PGW 409 B 1 HETATM 14 C C04 PGW . . . V 7 23.607 -0.4 74.244 1 131.38 ? C04 PGW 409 B 1 HETATM 15 C C4 PGW . . . V 7 27.603 -5.675 78.959 1 54.39 ? C4 PGW 409 B 1 HETATM 16 O O04 PGW . . . V 7 20.875 -3.359 81.445 1 93.83 ? O04 PGW 409 B 1 HETATM 17 C C05 PGW . . . V 7 23.814 -1.349 73.085 1 132.87 ? C05 PGW 409 B 1 HETATM 18 C C5 PGW . . . V 7 27.883 -7.076 78.465 1 49.54 ? C5 PGW 409 B 1 HETATM 19 C C06 PGW . . . V 7 32.014 -12.505 79.76 1 62.63 ? C06 PGW 409 B 1 HETATM 20 C C6 PGW . . . V 7 29.272 -7.594 78.795 1 50.16 ? C6 PGW 409 B 1 HETATM 21 C C07 PGW . . . V 7 31.195 -13.44 80.603 1 63.22 ? C07 PGW 409 B 1 HETATM 22 C C7 PGW . . . V 7 29.567 -8.975 78.22 1 52.73 ? C7 PGW 409 B 1 HETATM 23 C C08 PGW . . . V 7 31.952 -13.984 81.804 1 69.67 ? C08 PGW 409 B 1 HETATM 24 C C8 PGW . . . V 7 30.847 -9.625 78.67 1 55.58 ? C8 PGW 409 B 1 HETATM 25 C C09 PGW . . . V 7 31.126 -14.783 82.784 1 80.42 ? C09 PGW 409 B 1 HETATM 26 C C9 PGW . . . V 7 31.062 -10.945 77.989 1 63.49 ? C9 PGW 409 B 1 HETATM 27 C C10 PGW . . . V 7 31.392 -12.134 78.449 1 62.33 ? C10 PGW 409 B 1 HETATM 28 C C11 PGW . . . V 7 31.901 -15.259 83.992 1 80.21 ? C11 PGW 409 B 1 HETATM 29 O O11 PGW . . . V 7 22.222 -1.505 77.708 1 121.84 ? O11 PGW 409 B 1 HETATM 30 C C12 PGW . . . V 7 31.066 -15.964 85.033 1 79.69 ? C12 PGW 409 B 1 HETATM 31 O O12 PGW . . . V 7 23.12 -1.17 75.379 1 129.47 ? O12 PGW 409 B 1 HETATM 32 C C13 PGW . . . V 7 31.837 -16.451 86.235 1 90.03 ? C13 PGW 409 B 1 HETATM 33 O O13 PGW . . . V 7 20.818 -0.358 75.924 1 129.25 ? O13 PGW 409 B 1 HETATM 34 C C14 PGW . . . V 7 32.51 -15.35 87.019 1 94.86 ? C14 PGW 409 B 1 HETATM 35 O O14 PGW . . . V 7 22.909 0.795 76.947 1 125.19 ? O14 PGW 409 B 1 HETATM 36 C C15 PGW . . . V 7 22.408 -12.888 83.438 1 56.83 ? C15 PGW 409 B 1 HETATM 37 C C16 PGW . . . V 7 22.715 -12.214 84.755 1 50.47 ? C16 PGW 409 B 1 HETATM 38 C C17 PGW . . . V 7 24.192 -12.006 85.002 1 48.96 ? C17 PGW 409 B 1 HETATM 39 C C18 PGW . . . V 7 24.526 -11.312 86.3 1 48.69 ? C18 PGW 409 B 1 HETATM 40 C C19 PGW . . . V 7 20.458 -4.482 81.334 1 92.25 ? C19 PGW 409 B 1 HETATM 41 C C20 PGW . . . V 7 19.667 -5.227 82.374 1 81.17 ? C20 PGW 409 B 1 HETATM 42 C C21 PGW . . . V 7 20.243 -6.568 82.693 1 65.23 ? C21 PGW 409 B 1 HETATM 43 C C22 PGW . . . V 7 19.196 -7.581 83.121 1 58.3 ? C22 PGW 409 B 1 HETATM 44 C C23 PGW . . . V 7 19.762 -8.959 83.349 1 59.34 ? C23 PGW 409 B 1 HETATM 45 C C24 PGW . . . V 7 18.749 -10.017 83.708 1 67.36 ? C24 PGW 409 B 1 HETATM 46 C C25 PGW . . . V 7 19.367 -11.361 84.009 1 76.69 ? C25 PGW 409 B 1 HETATM 47 C C26 PGW . . . V 7 20.098 -11.977 82.84 1 72.7 ? C26 PGW 409 B 1 HETATM 48 C C27 PGW . . . V 7 20.944 -13.183 83.181 1 64.91 ? C27 PGW 409 B 1 HETATM 49 C C28 PGW . . . V 7 26.007 -11.184 86.572 1 48.1 ? C28 PGW 409 B 1 HETATM 50 C C29 PGW . . . V 7 27.775 -10.594 88.282 1 40.85 ? C29 PGW 409 B 1 HETATM 51 C C30 PGW . . . V 7 26.332 -10.464 87.855 1 44.61 ? C30 PGW 409 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 51 #