data_6TPK # _model_server_result.job_id fOPzmgdWutc0QD8S7ZkNKw _model_server_result.datetime_utc '2024-11-26 18:31:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tpk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1501}' # _entry.id 6TPK # _exptl.entry_id 6TPK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 494.583 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3~{R},6~{R})-6-[(2~{S})-butan-2-yl]-3-(2,3-dihydro-1~{H}-inden-2-yl)-1-[(1~{R})-1-(2-methyl-1,3-oxazol-4-yl)-2-morpholin-4-yl-2-oxidanylidene-ethyl]piperazine-2,5-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TPK _cell.length_a 76.987 _cell.length_b 78.858 _cell.length_c 283.486 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TPK _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 78 A CYS 112 1_555 A SG CYS 153 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.86 ? covale ? covale1 A C ASP 307 A ASP 341 1_555 A N YCM 308 A YCM 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale2 A C YCM 308 A YCM 342 1_555 A N SER 309 A SER 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C27 H34 N4 O5' _chem_comp.formula_weight 494.583 _chem_comp.id NU2 _chem_comp.mon_nstd_flag . _chem_comp.name (3~{R},6~{R})-6-[(2~{S})-butan-2-yl]-3-(2,3-dihydro-1~{H}-inden-2-yl)-1-[(1~{R})-1-(2-methyl-1,3-oxazol-4-yl)-2-morpholin-4-yl-2-oxidanylidene-ethyl]piperazine-2,5-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6TPK _atom_sites.fract_transf_matrix[1][1] 0.012989 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012681 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003528 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NU2 A 1 1501 1501 NU2 LIG . C 3 CLR A 1 1502 1601 CLR CLR . D 4 PEG A 1 1503 1701 PEG PEG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 NU2 . . . B 2 -7.986 3.454 123.75 1 101.42 ? C10 NU2 1501 A 1 HETATM 2 C C13 NU2 . . . B 2 -6.549 3.112 123.586 1 96.53 ? C13 NU2 1501 A 1 HETATM 3 C C15 NU2 . . . B 2 -7.835 2.495 126.192 1 116.19 ? C15 NU2 1501 A 1 HETATM 4 C C17 NU2 . . . B 2 -6.306 3.67 122.139 1 103.35 ? C17 NU2 1501 A 1 HETATM 5 C C20 NU2 . . . B 2 -6.709 0.808 127.728 1 133.36 ? C20 NU2 1501 A 1 HETATM 6 C C21 NU2 . . . B 2 -7.701 -1.119 123.314 1 94.96 ? C21 NU2 1501 A 1 HETATM 7 C C22 NU2 . . . B 2 -5.797 -0.967 124.88 1 106.75 ? C22 NU2 1501 A 1 HETATM 8 C C24 NU2 . . . B 2 -5.056 4.239 121.407 1 102.22 ? C24 NU2 1501 A 1 HETATM 9 C C26 NU2 . . . B 2 -6.456 -0.636 128.049 1 136.81 ? C26 NU2 1501 A 1 HETATM 10 C C28 NU2 . . . B 2 -5.184 4.727 119.939 1 91.65 ? C28 NU2 1501 A 1 HETATM 11 C C11 NU2 . . . B 2 -8.724 2.838 124.957 1 112.73 ? C11 NU2 1501 A 1 HETATM 12 C C12 NU2 . . . B 2 -8.078 0.062 125.553 1 111.2 ? C12 NU2 1501 A 1 HETATM 13 C C14 NU2 . . . B 2 -8.604 3.027 122.392 1 100.25 ? C14 NU2 1501 A 1 HETATM 14 C C16 NU2 . . . B 2 -7.076 -0.241 124.406 1 105.35 ? C16 NU2 1501 A 1 HETATM 15 C C18 NU2 . . . B 2 -7.624 3.6 121.428 1 102.08 ? C18 NU2 1501 A 1 HETATM 16 C C19 NU2 . . . B 2 -9.432 0.403 124.904 1 108.27 ? C19 NU2 1501 A 1 HETATM 17 C C23 NU2 . . . B 2 -7.362 1.398 129.033 1 138.6 ? C23 NU2 1501 A 1 HETATM 18 C C25 NU2 . . . B 2 -7.769 4.086 119.955 1 91.47 ? C25 NU2 1501 A 1 HETATM 19 C C27 NU2 . . . B 2 -7.944 -2.575 123.864 1 95.93 ? C27 NU2 1501 A 1 HETATM 20 C C29 NU2 . . . B 2 -6.533 4.652 119.214 1 90.57 ? C29 NU2 1501 A 1 HETATM 21 C C30 NU2 . . . B 2 -7.229 1.933 131.568 1 153.02 ? C30 NU2 1501 A 1 HETATM 22 C C31 NU2 . . . B 2 -5.324 0.907 130.612 1 145.67 ? C31 NU2 1501 A 1 HETATM 23 C C32 NU2 . . . B 2 -7.362 -1.62 128.302 1 136.51 ? C32 NU2 1501 A 1 HETATM 24 C C33 NU2 . . . B 2 -6.257 2.783 132.398 1 160.51 ? C33 NU2 1501 A 1 HETATM 25 C C34 NU2 . . . B 2 -4.371 1.967 131.185 1 155.73 ? C34 NU2 1501 A 1 HETATM 26 C C35 NU2 . . . B 2 -5.366 -2.441 128.517 1 140.61 ? C35 NU2 1501 A 1 HETATM 27 C C36 NU2 . . . B 2 -4.184 -3.413 128.77 1 142.75 ? C36 NU2 1501 A 1 HETATM 28 N N06 NU2 . . . B 2 -7.533 1.093 126.515 1 119.29 ? N06 NU2 1501 A 1 HETATM 29 N N07 NU2 . . . B 2 -9.727 1.817 124.587 1 113.18 ? N07 NU2 1501 A 1 HETATM 30 N N08 NU2 . . . B 2 -6.65 1.409 130.342 1 140.8 ? N08 NU2 1501 A 1 HETATM 31 N N09 NU2 . . . B 2 -5.24 -1.151 128.202 1 139.33 ? N09 NU2 1501 A 1 HETATM 32 O O01 NU2 . . . B 2 -7.456 3.38 126.892 1 116.65 ? O01 NU2 1501 A 1 HETATM 33 O O02 NU2 . . . B 2 -10.236 -0.434 124.633 1 100.52 ? O02 NU2 1501 A 1 HETATM 34 O O03 NU2 . . . B 2 -8.463 1.846 128.995 1 140.9 ? O03 NU2 1501 A 1 HETATM 35 O O04 NU2 . . . B 2 -5.055 3.101 131.707 1 161.69 ? O04 NU2 1501 A 1 HETATM 36 O O05 NU2 . . . B 2 -6.688 -2.729 128.575 1 138.67 ? O05 NU2 1501 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 502 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 36 #