data_6TPN # _model_server_result.job_id trQKNRXTTYjCH0LxWG77Ew _model_server_result.datetime_utc '2024-11-22 19:02:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tpn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 6TPN # _exptl.entry_id 6TPN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 480.417 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(5,6-dimethoxypyridin-3-yl)-1,1-bis(oxidanylidene)-4-[[2,4,6-tris(fluoranyl)phenyl]methyl]pyrido[2,3-e][1,2,4]thiadiazin-3-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TPN _cell.length_a 90.945 _cell.length_b 173.95 _cell.length_c 78.327 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TPN _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 138 A CYS 127 1_555 A SG CYS 221 A CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A C ASP 268 A ASP 1003 1_555 A N YCM 269 A YCM 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale2 A C YCM 269 A YCM 1004 1_555 A N SER 270 A SER 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C20 H15 F3 N4 O5 S' _chem_comp.formula_weight 480.417 _chem_comp.id NU8 _chem_comp.mon_nstd_flag . _chem_comp.name 2-(5,6-dimethoxypyridin-3-yl)-1,1-bis(oxidanylidene)-4-[[2,4,6-tris(fluoranyl)phenyl]methyl]pyrido[2,3-e][1,2,4]thiadiazin-3-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F3 C17 NU8 sing 240 n n C18 C17 NU8 doub 241 n y C18 C13 NU8 sing 242 n y C17 C16 NU8 sing 243 n y F1 C13 NU8 sing 244 n n C13 C14 NU8 doub 245 n y C16 C12 NU8 sing 246 n n C16 C15 NU8 doub 247 n y C12 N3 NU8 sing 248 n n C14 C15 NU8 sing 249 n y C15 F2 NU8 sing 250 n n O1 C5 NU8 doub 251 n n N1 C3 NU8 doub 252 n y N1 C4 NU8 sing 253 n y N3 C5 NU8 sing 254 n n N3 C4 NU8 sing 255 n n C5 N4 NU8 sing 256 n n C3 C2 NU8 sing 257 n y C4 C6 NU8 doub 258 n y N4 C10 NU8 sing 259 n n N4 S1 NU8 sing 260 n n C2 C1 NU8 doub 261 n y C6 C1 NU8 sing 262 n y C6 S1 NU8 sing 263 n n C10 C9 NU8 doub 264 n y C10 C11 NU8 sing 265 n y C9 C8 NU8 sing 266 n y C20 O5 NU8 sing 267 n n O3 S1 NU8 doub 268 n n C11 N2 NU8 doub 269 n y S1 O2 NU8 doub 270 n n C8 O5 NU8 sing 271 n n C8 C7 NU8 doub 272 n y N2 C7 NU8 sing 273 n y C7 O4 NU8 sing 274 n n O4 C19 NU8 sing 275 n n C20 H1 NU8 sing 276 n n C20 H2 NU8 sing 277 n n C20 H3 NU8 sing 278 n n C1 H4 NU8 sing 279 n n C11 H5 NU8 sing 280 n n C12 H6 NU8 sing 281 n n C12 H7 NU8 sing 282 n n C14 H8 NU8 sing 283 n n C18 H9 NU8 sing 284 n n C19 H10 NU8 sing 285 n n C19 H11 NU8 sing 286 n n C19 H12 NU8 sing 287 n n C2 H13 NU8 sing 288 n n C3 H14 NU8 sing 289 n n C9 H15 NU8 sing 290 n n # _atom_sites.entry_id 6TPN _atom_sites.fract_transf_matrix[1][1] 0.010996 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005749 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012767 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NU8 A 1 1201 900 NU8 LIG . C 3 NO3 A 1 1202 1 NO3 NO3 . D 3 NO3 A 1 1203 2 NO3 NO3 . E 4 PG4 A 1 1204 1 PG4 PG4 . F 4 PG4 A 1 1205 2 PG4 PG4 . G 5 OLA A 1 1206 2 OLA OLA . H 5 OLA A 1 1207 3 OLA OLA . I 5 OLA A 1 1208 4 OLA OLA . J 5 OLA A 1 1209 5 OLA OLA . K 6 HOH A 1 1301 67 HOH HOH . K 6 HOH A 2 1302 59 HOH HOH . K 6 HOH A 3 1303 70 HOH HOH . K 6 HOH A 4 1304 73 HOH HOH . K 6 HOH A 5 1305 44 HOH HOH . K 6 HOH A 6 1306 53 HOH HOH . K 6 HOH A 7 1307 14 HOH HOH . K 6 HOH A 8 1308 27 HOH HOH . K 6 HOH A 9 1309 39 HOH HOH . K 6 HOH A 10 1310 52 HOH HOH . K 6 HOH A 11 1311 18 HOH HOH . K 6 HOH A 12 1312 1 HOH HOH . K 6 HOH A 13 1313 31 HOH HOH . K 6 HOH A 14 1314 10 HOH HOH . K 6 HOH A 15 1315 50 HOH HOH . K 6 HOH A 16 1316 16 HOH HOH . K 6 HOH A 17 1317 54 HOH HOH . K 6 HOH A 18 1318 47 HOH HOH . K 6 HOH A 19 1319 71 HOH HOH . K 6 HOH A 20 1320 21 HOH HOH . K 6 HOH A 21 1321 32 HOH HOH . K 6 HOH A 22 1322 12 HOH HOH . K 6 HOH A 23 1323 23 HOH HOH . K 6 HOH A 24 1324 26 HOH HOH . K 6 HOH A 25 1325 48 HOH HOH . K 6 HOH A 26 1326 42 HOH HOH . K 6 HOH A 27 1327 68 HOH HOH . K 6 HOH A 28 1328 60 HOH HOH . K 6 HOH A 29 1329 24 HOH HOH . K 6 HOH A 30 1330 61 HOH HOH . K 6 HOH A 31 1331 8 HOH HOH . K 6 HOH A 32 1332 69 HOH HOH . K 6 HOH A 33 1333 3 HOH HOH . K 6 HOH A 34 1334 29 HOH HOH . K 6 HOH A 35 1335 58 HOH HOH . K 6 HOH A 36 1336 49 HOH HOH . K 6 HOH A 37 1337 45 HOH HOH . K 6 HOH A 38 1338 13 HOH HOH . K 6 HOH A 39 1339 41 HOH HOH . K 6 HOH A 40 1340 57 HOH HOH . K 6 HOH A 41 1341 51 HOH HOH . K 6 HOH A 42 1342 43 HOH HOH . K 6 HOH A 43 1343 55 HOH HOH . K 6 HOH A 44 1344 7 HOH HOH . K 6 HOH A 45 1345 72 HOH HOH . K 6 HOH A 46 1346 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 NU8 . . . B 2 97.663 224.946 1.439 1 70.55 ? N1 NU8 1201 A 1 HETATM 2 N N3 NU8 . . . B 2 95.304 224.865 1.478 1 74.02 ? N3 NU8 1201 A 1 HETATM 3 C C4 NU8 . . . B 2 96.541 224.88 2.149 1 72.48 ? C4 NU8 1201 A 1 HETATM 4 C C5 NU8 . . . B 2 94.196 225.461 1.921 1 74.65 ? C5 NU8 1201 A 1 HETATM 5 C C6 NU8 . . . B 2 96.518 224.796 3.535 1 72.07 ? C6 NU8 1201 A 1 HETATM 6 C C7 NU8 . . . B 2 90.742 227.504 4.947 0.29 65.34 ? C7 NU8 1201 A 1 HETATM 7 C C8 NU8 . . . B 2 90.628 226.165 4.47 0.75 66.09 ? C8 NU8 1201 A 1 HETATM 8 C C10 NU8 . . . B 2 92.942 226.242 3.792 1 69.24 ? C10 NU8 1201 A 1 HETATM 9 C C13 NU8 . . . B 2 97.193 220.476 -0.28 1 78.71 ? C13 NU8 1201 A 1 HETATM 10 C C15 NU8 . . . B 2 95.276 221.771 0.438 1 78.48 ? C15 NU8 1201 A 1 HETATM 11 C C17 NU8 . . . B 2 97.192 222.845 -0.5 1 78.9 ? C17 NU8 1201 A 1 HETATM 12 C C20 NU8 . . . B 2 89.373 224.17 4.079 1 65.67 ? C20 NU8 1201 A 1 HETATM 13 C C1 NU8 . . . B 2 97.721 224.797 4.215 1 71.8 ? C1 NU8 1201 A 1 HETATM 14 C C11 NU8 . . . B 2 92.99 227.572 4.273 0.64 67.68 ? C11 NU8 1201 A 1 HETATM 15 C C12 NU8 . . . B 2 95.306 224.339 0.143 1 76.44 ? C12 NU8 1201 A 1 HETATM 16 C C14 NU8 . . . B 2 95.917 220.545 0.275 1 78.6 ? C14 NU8 1201 A 1 HETATM 17 C C16 NU8 . . . B 2 95.928 222.948 0.04 1 78.66 ? C16 NU8 1201 A 1 HETATM 18 C C18 NU8 . . . B 2 97.824 221.633 -0.662 1 78.51 ? C18 NU8 1201 A 1 HETATM 19 C C19 NU8 . . . B 2 89.806 229.53 6.026 1 61.68 ? C19 NU8 1201 A 1 HETATM 20 C C2 NU8 . . . B 2 98.888 224.88 3.486 1 71.02 ? C2 NU8 1201 A 1 HETATM 21 C C3 NU8 . . . B 2 98.807 224.954 2.108 1 70.64 ? C3 NU8 1201 A 1 HETATM 22 C C9 NU8 . . . B 2 91.742 225.551 3.898 0.6 67.22 ? C9 NU8 1201 A 1 HETATM 23 F F1 NU8 . . . B 2 97.848 219.318 -0.459 1 79.41 ? F1 NU8 1201 A 1 HETATM 24 F F2 NU8 . . . B 2 94.048 221.813 0.962 1 77.18 ? F2 NU8 1201 A 1 HETATM 25 F F3 NU8 . . . B 2 97.814 223.933 -0.881 1 78.92 ? F3 NU8 1201 A 1 HETATM 26 N N2 NU8 . . . B 2 91.916 228.2 4.84 0.87 67.1 ? N2 NU8 1201 A 1 HETATM 27 N N4 NU8 . . . B 2 94.073 225.58 3.334 1 72.37 ? N4 NU8 1201 A 1 HETATM 28 O O1 NU8 . . . B 2 93.336 225.9 1.216 1 74.92 ? O1 NU8 1201 A 1 HETATM 29 O O2 NU8 . . . B 2 95.053 225.403 5.607 1 71.9 ? O2 NU8 1201 A 1 HETATM 30 O O3 NU8 . . . B 2 94.467 223.388 4.239 1 73.29 ? O3 NU8 1201 A 1 HETATM 31 O O4 NU8 . . . B 2 89.705 228.212 5.545 1 62.85 ? O4 NU8 1201 A 1 HETATM 32 O O5 NU8 . . . B 2 89.448 225.483 4.588 1 65.83 ? O5 NU8 1201 A 1 HETATM 33 S S1 NU8 . . . B 2 95.011 224.701 4.363 1 73.64 ? S1 NU8 1201 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #