data_6TQ4 # _model_server_result.job_id -frge4cUeJ1sYblHog2xjg _model_server_result.datetime_utc '2024-11-22 18:16:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tq4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6TQ4 # _exptl.entry_id 6TQ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 397.491 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[1-(phenylsulfonyl)-1,8-diazaspiro[4.5]decan-8-yl]-1,3-benzoxazole _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.33 _cell.angle_gamma 90 _cell.entry_id 6TQ4 _cell.length_a 59.339 _cell.length_b 145.892 _cell.length_c 71.341 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TQ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,Y 1 1 B,P,Q,R,S,T,U,V,W,X,Z 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 95 A CYS 119 1_555 A SG CYS 178 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 B SG CYS 95 B CYS 119 1_555 B SG CYS 178 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 A OD1 ASP 68 A ASP 92 1_555 O NA NA . A NA 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.987 ? metalc ? metalc2 A OH TYR 287 A TYR 311 1_555 O NA NA . A NA 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.814 ? # _chem_comp.formula 'C21 H23 N3 O3 S' _chem_comp.formula_weight 397.491 _chem_comp.id NV8 _chem_comp.mon_nstd_flag . _chem_comp.name 2-[1-(phenylsulfonyl)-1,8-diazaspiro[4.5]decan-8-yl]-1,3-benzoxazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 C12 NV8 sing 237 n n C15 C16 NV8 sing 238 n n C12 C01 NV8 sing 239 n n C17 C16 NV8 sing 240 n n C17 C18 NV8 sing 241 n n C20 C16 NV8 sing 242 n n C20 C19 NV8 sing 243 n n C16 N01 NV8 sing 244 n n N02 C18 NV8 sing 245 n n N02 C19 NV8 sing 246 n n N02 C21 NV8 sing 247 n n C21 N03 NV8 doub 248 n y C21 O03 NV8 sing 249 n y N03 C02 NV8 sing 250 n y C01 N01 NV8 sing 251 n n N01 S01 NV8 sing 252 n n O03 C07 NV8 sing 253 n y C02 C07 NV8 doub 254 n y C02 C03 NV8 sing 255 n y C07 C06 NV8 sing 256 n y C03 C04 NV8 doub 257 n y C06 C05 NV8 doub 258 n y C04 C05 NV8 sing 259 n y S01 O02 NV8 doub 260 n n S01 C08 NV8 sing 261 n n S01 O01 NV8 doub 262 n n C08 C09 NV8 doub 263 n y C08 C14 NV8 sing 264 n y C09 C10 NV8 sing 265 n y C14 C13 NV8 doub 266 n y C10 C11 NV8 doub 267 n y C13 C11 NV8 sing 268 n y C01 H01 NV8 sing 269 n n C01 H02 NV8 sing 270 n n C03 H09 NV8 sing 271 n n C04 H10 NV8 sing 272 n n C05 H11 NV8 sing 273 n n C06 H12 NV8 sing 274 n n C09 H13 NV8 sing 275 n n C10 H14 NV8 sing 276 n n C11 H15 NV8 sing 277 n n C12 H03 NV8 sing 278 n n C12 H18 NV8 sing 279 n n C13 H16 NV8 sing 280 n n C14 H17 NV8 sing 281 n n C15 H19 NV8 sing 282 n n C15 H20 NV8 sing 283 n n C17 H22 NV8 sing 284 n n C17 H21 NV8 sing 285 n n C18 H23 NV8 sing 286 n n C18 H04 NV8 sing 287 n n C19 H06 NV8 sing 288 n n C19 H05 NV8 sing 289 n n C20 H08 NV8 sing 290 n n C20 H07 NV8 sing 291 n n # _atom_sites.entry_id 6TQ4 _atom_sites.fract_transf_matrix[1][1] 0.016852 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006923 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006854 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015154 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NV8 A 1 401 401 NV8 UNL . D 3 SO4 A 1 402 1 SO4 SO4 . E 3 SO4 A 1 403 4 SO4 SO4 . F 4 PGW A 1 404 2 PGW PGW . G 5 SOG A 1 405 2 SOG SOG . H 5 SOG A 1 406 4 SOG SOG . I 5 SOG A 1 407 5 SOG SOG . J 5 SOG A 1 408 6 SOG SOG . K 5 SOG A 1 409 16 SOG SOG . L 5 SOG A 1 410 17 SOG SOG . M 5 SOG A 1 411 19 SOG SOG . N 5 SOG A 1 412 20 SOG SOG . O 6 NA A 1 413 1 NA NA . P 2 NV8 B 1 401 401 NV8 UNL . Q 3 SO4 B 1 402 2 SO4 SO4 . R 3 SO4 B 1 403 3 SO4 SO4 . S 4 PGW B 1 404 1 PGW PGW . T 5 SOG B 1 405 14 SOG SOG . U 5 SOG B 1 406 15 SOG SOG . V 5 SOG B 1 407 18 SOG SOG . W 5 SOG B 1 408 21 SOG SOG . X 5 SOG B 1 409 22 SOG SOG . Y 7 HOH A 1 501 24 HOH HOH . Y 7 HOH A 2 502 11 HOH HOH . Y 7 HOH A 3 503 8 HOH HOH . Y 7 HOH A 4 504 4 HOH HOH . Y 7 HOH A 5 505 6 HOH HOH . Y 7 HOH A 6 506 10 HOH HOH . Y 7 HOH A 7 507 18 HOH HOH . Y 7 HOH A 8 508 12 HOH HOH . Y 7 HOH A 9 509 2 HOH HOH . Y 7 HOH A 10 510 1 HOH HOH . Y 7 HOH A 11 511 3 HOH HOH . Y 7 HOH A 12 512 31 HOH HOH . Y 7 HOH A 13 513 15 HOH HOH . Y 7 HOH A 14 514 30 HOH HOH . Y 7 HOH A 15 515 38 HOH HOH . Y 7 HOH A 16 516 13 HOH HOH . Y 7 HOH A 17 517 19 HOH HOH . Y 7 HOH A 18 518 33 HOH HOH . Y 7 HOH A 19 519 21 HOH HOH . Y 7 HOH A 20 520 16 HOH HOH . Y 7 HOH A 21 521 26 HOH HOH . Y 7 HOH A 22 522 28 HOH HOH . Y 7 HOH A 23 523 39 HOH HOH . Y 7 HOH A 24 524 25 HOH HOH . Y 7 HOH A 25 525 32 HOH HOH . Y 7 HOH A 26 526 27 HOH HOH . Y 7 HOH A 27 527 36 HOH HOH . Z 7 HOH B 1 501 42 HOH HOH . Z 7 HOH B 2 502 5 HOH HOH . Z 7 HOH B 3 503 17 HOH HOH . Z 7 HOH B 4 504 9 HOH HOH . Z 7 HOH B 5 505 23 HOH HOH . Z 7 HOH B 6 506 43 HOH HOH . Z 7 HOH B 7 507 7 HOH HOH . Z 7 HOH B 8 508 29 HOH HOH . Z 7 HOH B 9 509 41 HOH HOH . Z 7 HOH B 10 510 35 HOH HOH . Z 7 HOH B 11 511 40 HOH HOH . Z 7 HOH B 12 512 37 HOH HOH . Z 7 HOH B 13 513 34 HOH HOH . Z 7 HOH B 14 514 20 HOH HOH . Z 7 HOH B 15 515 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 NV8 . . . C 2 26.501 -4.48 224.501 1 115.93 ? C01 NV8 401 A 1 HETATM 2 C C02 NV8 . . . C 2 28.943 3.483 225.016 1 96.29 ? C02 NV8 401 A 1 HETATM 3 C C03 NV8 . . . C 2 28.646 4.788 225.388 1 84.56 ? C03 NV8 401 A 1 HETATM 4 C C04 NV8 . . . C 2 29.674 5.547 225.931 1 81.88 ? C04 NV8 401 A 1 HETATM 5 C C05 NV8 . . . C 2 30.951 5.033 226.096 1 84.01 ? C05 NV8 401 A 1 HETATM 6 C C06 NV8 . . . C 2 31.267 3.735 225.725 1 89.04 ? C06 NV8 401 A 1 HETATM 7 C C07 NV8 . . . C 2 30.231 2.989 225.185 1 97.6 ? C07 NV8 401 A 1 HETATM 8 C C08 NV8 . . . C 2 29.091 -3.889 226.837 1 121.49 ? C08 NV8 401 A 1 HETATM 9 C C09 NV8 . . . C 2 28.862 -5.251 226.994 1 115.49 ? C09 NV8 401 A 1 HETATM 10 C C10 NV8 . . . C 2 29.914 -6.089 227.326 1 113.33 ? C10 NV8 401 A 1 HETATM 11 C C11 NV8 . . . C 2 31.181 -5.556 227.49 1 115.43 ? C11 NV8 401 A 1 HETATM 12 C C12 NV8 . . . C 2 26.98 -4.914 223.136 1 112.56 ? C12 NV8 401 A 1 HETATM 13 C C13 NV8 . . . C 2 31.405 -4.196 227.342 1 119.71 ? C13 NV8 401 A 1 HETATM 14 C C14 NV8 . . . C 2 30.359 -3.358 227.012 1 118.65 ? C14 NV8 401 A 1 HETATM 15 C C15 NV8 . . . C 2 27.27 -3.613 222.423 1 110.18 ? C15 NV8 401 A 1 HETATM 16 C C16 NV8 . . . C 2 27.663 -2.551 223.474 1 107.05 ? C16 NV8 401 A 1 HETATM 17 C C17 NV8 . . . C 2 26.782 -1.322 223.26 1 104.65 ? C17 NV8 401 A 1 HETATM 18 C C18 NV8 . . . C 2 27.241 -0.067 223.99 1 103.04 ? C18 NV8 401 A 1 HETATM 19 C C19 NV8 . . . C 2 29.543 -0.831 224.013 1 97 ? C19 NV8 401 A 1 HETATM 20 C C20 NV8 . . . C 2 29.143 -2.149 223.325 1 95.83 ? C20 NV8 401 A 1 HETATM 21 C C21 NV8 . . . C 2 28.976 1.514 224.334 1 97.83 ? C21 NV8 401 A 1 HETATM 22 N N01 NV8 . . . C 2 27.305 -3.258 224.744 1 117.73 ? N01 NV8 401 A 1 HETATM 23 N N02 NV8 . . . C 2 28.642 0.301 223.825 1 98.94 ? N02 NV8 401 A 1 HETATM 24 N N03 NV8 . . . C 2 28.163 2.526 224.474 1 95.7 ? N03 NV8 401 A 1 HETATM 25 O O01 NV8 . . . C 2 26.637 -3.31 227.258 1 145.16 ? O01 NV8 401 A 1 HETATM 26 O O02 NV8 . . . C 2 28.174 -1.47 226.551 1 143.49 ? O02 NV8 401 A 1 HETATM 27 O O03 NV8 . . . C 2 30.248 1.716 224.748 1 100.69 ? O03 NV8 401 A 1 HETATM 28 S S01 NV8 . . . C 2 27.717 -2.832 226.416 1 143.3 ? S01 NV8 401 A 1 HETATM 29 H H01 NV8 . . . C 2 26.646 -5.177 225.161 1 139.24 ? H01 NV8 401 A 1 HETATM 30 H H02 NV8 . . . C 2 25.558 -4.261 224.439 1 139.24 ? H02 NV8 401 A 1 HETATM 31 H H09 NV8 . . . C 2 27.786 5.124 225.277 1 101.59 ? H09 NV8 401 A 1 HETATM 32 H H10 NV8 . . . C 2 29.506 6.424 226.191 1 98.39 ? H10 NV8 401 A 1 HETATM 33 H H11 NV8 . . . C 2 31.61 5.578 226.46 1 100.94 ? H11 NV8 401 A 1 HETATM 34 H H12 NV8 . . . C 2 32.118 3.375 225.828 1 106.97 ? H12 NV8 401 A 1 HETATM 35 H H13 NV8 . . . C 2 28.008 -5.6 226.877 1 138.71 ? H13 NV8 401 A 1 HETATM 36 H H14 NV8 . . . C 2 29.769 -7.002 227.428 1 136.12 ? H14 NV8 401 A 1 HETATM 37 H H15 NV8 . . . C 2 31.889 -6.116 227.715 1 138.64 ? H15 NV8 401 A 1 HETATM 38 H H03 NV8 . . . C 2 27.783 -5.452 223.216 1 135.21 ? H03 NV8 401 A 1 HETATM 39 H H18 NV8 . . . C 2 26.319 -5.453 222.674 1 135.21 ? H18 NV8 401 A 1 HETATM 40 H H16 NV8 . . . C 2 32.259 -3.847 227.456 1 143.78 ? H16 NV8 401 A 1 HETATM 41 H H17 NV8 . . . C 2 30.509 -2.446 226.908 1 142.5 ? H17 NV8 401 A 1 HETATM 42 H H19 NV8 . . . C 2 26.459 -3.347 221.963 1 132.34 ? H19 NV8 401 A 1 HETATM 43 H H20 NV8 . . . C 2 27.932 -3.728 221.724 1 132.34 ? H20 NV8 401 A 1 HETATM 44 H H22 NV8 . . . C 2 25.871 -1.517 223.533 1 125.7 ? H22 NV8 401 A 1 HETATM 45 H H21 NV8 . . . C 2 26.718 -1.093 222.32 1 125.7 ? H21 NV8 401 A 1 HETATM 46 H H23 NV8 . . . C 2 27.025 -0.113 224.935 1 123.77 ? H23 NV8 401 A 1 HETATM 47 H H04 NV8 . . . C 2 26.7 0.662 223.649 1 123.77 ? H04 NV8 401 A 1 HETATM 48 H H06 NV8 . . . C 2 30.405 -0.584 223.641 1 116.53 ? H06 NV8 401 A 1 HETATM 49 H H05 NV8 . . . C 2 29.704 -0.943 224.963 1 116.53 ? H05 NV8 401 A 1 HETATM 50 H H08 NV8 . . . C 2 29.379 -2.045 222.39 1 115.12 ? H08 NV8 401 A 1 HETATM 51 H H07 NV8 . . . C 2 29.719 -2.867 223.634 1 115.12 ? H07 NV8 401 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 51 #