data_6TQ4 # _model_server_result.job_id nAolRIypJvmFpZp53tIqoA _model_server_result.datetime_utc '2024-11-26 02:54:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tq4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 6TQ4 # _exptl.entry_id 6TQ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 749.007 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.33 _cell.angle_gamma 90 _cell.entry_id 6TQ4 _cell.length_a 59.339 _cell.length_b 145.892 _cell.length_c 71.341 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TQ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,Y 1 1 B,P,Q,R,S,T,U,V,W,X,Z 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 95 A CYS 119 1_555 A SG CYS 178 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 B SG CYS 95 B CYS 119 1_555 B SG CYS 178 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 A OD1 ASP 68 A ASP 92 1_555 O NA NA . A NA 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.987 ? metalc ? metalc2 A OH TYR 287 A TYR 311 1_555 O NA NA . A NA 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.814 ? # _chem_comp.formula 'C40 H77 O10 P' _chem_comp.formula_weight 749.007 _chem_comp.id PGW _chem_comp.mon_nstd_flag . _chem_comp.name '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Palmitoyl-2-Oleoyl-sn-Glycero-3-[Phospho-(1-glycerol)];PHOSPHATIDYLGLYCEROL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAD C05 PGW sing 292 n n CAD HAD PGW sing 293 n n CAD HADA PGW sing 294 n n OAE CAD PGW sing 295 n n OAE HOAE PGW sing 296 n n OAF C05 PGW sing 297 n n OAF HOAF PGW sing 298 n n P O13 PGW sing 299 n n P O11 PGW sing 300 n n C01 O03 PGW sing 301 n n C01 C02 PGW sing 302 n n C01 H01 PGW sing 303 n n C01 H01A PGW sing 304 n n C1 C2 PGW sing 305 n n O01 C1 PGW sing 306 n n C02 O01 PGW sing 307 n n C02 H02 PGW sing 308 n n C2 C3 PGW sing 309 n n C2 H2 PGW sing 310 n n C2 H2A PGW sing 311 n n O02 C1 PGW doub 312 n n C03 C02 PGW sing 313 n n C03 H03 PGW sing 314 n n C03 H03A PGW sing 315 n n C3 C4 PGW sing 316 n n C3 H3 PGW sing 317 n n C3 H3A PGW sing 318 n n C04 C05 PGW sing 319 n n C04 O12 PGW sing 320 n n C04 H04 PGW sing 321 n n C04 H04A PGW sing 322 n n C4 C5 PGW sing 323 n n C4 H4 PGW sing 324 n n C4 H4A PGW sing 325 n n O04 C19 PGW doub 326 n n C05 H05 PGW sing 327 n n C5 C6 PGW sing 328 n n C5 H5 PGW sing 329 n n C5 H5A PGW sing 330 n n C06 C07 PGW sing 331 n n C06 H06 PGW sing 332 n n C06 H06A PGW sing 333 n n C6 C7 PGW sing 334 n n C6 H6 PGW sing 335 n n C6 H6A PGW sing 336 n n C07 H07 PGW sing 337 n n C07 H07A PGW sing 338 n n C7 C8 PGW sing 339 n n C7 H7 PGW sing 340 n n C7 H7A PGW sing 341 n n C08 C07 PGW sing 342 n n C08 H08 PGW sing 343 n n C08 H08A PGW sing 344 n n C8 C9 PGW sing 345 n n C8 H8 PGW sing 346 n n C8 H8A PGW sing 347 n n C09 C08 PGW sing 348 n n C09 C11 PGW sing 349 n n C09 H09 PGW sing 350 n n C09 H09A PGW sing 351 n n C9 C10 PGW doub 352 z n C10 C06 PGW sing 353 n n C11 H11 PGW sing 354 n n C11 H11A PGW sing 355 n n O11 C03 PGW sing 356 n n C12 C11 PGW sing 357 n n C12 H12 PGW sing 358 n n C12 H12A PGW sing 359 n n O12 P PGW sing 360 n n C13 C12 PGW sing 361 n n C13 C14 PGW sing 362 n n C13 H13 PGW sing 363 n n C13 H13A PGW sing 364 n n O13 HO13 PGW sing 365 n n C14 H14 PGW sing 366 n n C14 H14A PGW sing 367 n n C14 H14B PGW sing 368 n n O14 P PGW doub 369 n n C15 C16 PGW sing 370 n n C15 H15 PGW sing 371 n n C15 H15A PGW sing 372 n n C16 H16 PGW sing 373 n n C16 H16A PGW sing 374 n n C17 C16 PGW sing 375 n n C17 C18 PGW sing 376 n n C17 H17 PGW sing 377 n n C17 H17A PGW sing 378 n n C18 C28 PGW sing 379 n n C18 H18 PGW sing 380 n n C18 H18A PGW sing 381 n n C19 O03 PGW sing 382 n n C19 C20 PGW sing 383 n n C20 C21 PGW sing 384 n n C20 H20 PGW sing 385 n n C20 H20A PGW sing 386 n n C21 C22 PGW sing 387 n n C21 H21 PGW sing 388 n n C21 H21A PGW sing 389 n n C22 C23 PGW sing 390 n n C22 H22 PGW sing 391 n n C22 H22A PGW sing 392 n n C23 C24 PGW sing 393 n n C23 H23 PGW sing 394 n n C23 H23A PGW sing 395 n n C24 C25 PGW sing 396 n n C24 H24 PGW sing 397 n n C24 H24A PGW sing 398 n n C25 C26 PGW sing 399 n n C25 H25 PGW sing 400 n n C25 H25A PGW sing 401 n n C26 C27 PGW sing 402 n n C26 H26 PGW sing 403 n n C26 H26A PGW sing 404 n n C27 C15 PGW sing 405 n n C27 H27 PGW sing 406 n n C27 H27A PGW sing 407 n n C28 H28 PGW sing 408 n n C28 H28A PGW sing 409 n n C29 H29 PGW sing 410 n n C29 H29A PGW sing 411 n n C29 H29B PGW sing 412 n n C30 C28 PGW sing 413 n n C30 C29 PGW sing 414 n n C30 H30 PGW sing 415 n n C30 H30A PGW sing 416 n n C9 H9 PGW sing 417 n n C10 H10 PGW sing 418 n n # _atom_sites.entry_id 6TQ4 _atom_sites.fract_transf_matrix[1][1] 0.016852 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006923 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006854 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015154 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NV8 A 1 401 401 NV8 UNL . D 3 SO4 A 1 402 1 SO4 SO4 . E 3 SO4 A 1 403 4 SO4 SO4 . F 4 PGW A 1 404 2 PGW PGW . G 5 SOG A 1 405 2 SOG SOG . H 5 SOG A 1 406 4 SOG SOG . I 5 SOG A 1 407 5 SOG SOG . J 5 SOG A 1 408 6 SOG SOG . K 5 SOG A 1 409 16 SOG SOG . L 5 SOG A 1 410 17 SOG SOG . M 5 SOG A 1 411 19 SOG SOG . N 5 SOG A 1 412 20 SOG SOG . O 6 NA A 1 413 1 NA NA . P 2 NV8 B 1 401 401 NV8 UNL . Q 3 SO4 B 1 402 2 SO4 SO4 . R 3 SO4 B 1 403 3 SO4 SO4 . S 4 PGW B 1 404 1 PGW PGW . T 5 SOG B 1 405 14 SOG SOG . U 5 SOG B 1 406 15 SOG SOG . V 5 SOG B 1 407 18 SOG SOG . W 5 SOG B 1 408 21 SOG SOG . X 5 SOG B 1 409 22 SOG SOG . Y 7 HOH A 1 501 24 HOH HOH . Y 7 HOH A 2 502 11 HOH HOH . Y 7 HOH A 3 503 8 HOH HOH . Y 7 HOH A 4 504 4 HOH HOH . Y 7 HOH A 5 505 6 HOH HOH . Y 7 HOH A 6 506 10 HOH HOH . Y 7 HOH A 7 507 18 HOH HOH . Y 7 HOH A 8 508 12 HOH HOH . Y 7 HOH A 9 509 2 HOH HOH . Y 7 HOH A 10 510 1 HOH HOH . Y 7 HOH A 11 511 3 HOH HOH . Y 7 HOH A 12 512 31 HOH HOH . Y 7 HOH A 13 513 15 HOH HOH . Y 7 HOH A 14 514 30 HOH HOH . Y 7 HOH A 15 515 38 HOH HOH . Y 7 HOH A 16 516 13 HOH HOH . Y 7 HOH A 17 517 19 HOH HOH . Y 7 HOH A 18 518 33 HOH HOH . Y 7 HOH A 19 519 21 HOH HOH . Y 7 HOH A 20 520 16 HOH HOH . Y 7 HOH A 21 521 26 HOH HOH . Y 7 HOH A 22 522 28 HOH HOH . Y 7 HOH A 23 523 39 HOH HOH . Y 7 HOH A 24 524 25 HOH HOH . Y 7 HOH A 25 525 32 HOH HOH . Y 7 HOH A 26 526 27 HOH HOH . Y 7 HOH A 27 527 36 HOH HOH . Z 7 HOH B 1 501 42 HOH HOH . Z 7 HOH B 2 502 5 HOH HOH . Z 7 HOH B 3 503 17 HOH HOH . Z 7 HOH B 4 504 9 HOH HOH . Z 7 HOH B 5 505 23 HOH HOH . Z 7 HOH B 6 506 43 HOH HOH . Z 7 HOH B 7 507 7 HOH HOH . Z 7 HOH B 8 508 29 HOH HOH . Z 7 HOH B 9 509 41 HOH HOH . Z 7 HOH B 10 510 35 HOH HOH . Z 7 HOH B 11 511 40 HOH HOH . Z 7 HOH B 12 512 37 HOH HOH . Z 7 HOH B 13 513 34 HOH HOH . Z 7 HOH B 14 514 20 HOH HOH . Z 7 HOH B 15 515 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAD PGW . . . F 4 36.468 -34.469 234.063 1 145.8 ? CAD PGW 404 A 1 HETATM 2 O OAE PGW . . . F 4 35.642 -33.781 235.008 1 148.64 ? OAE PGW 404 A 1 HETATM 3 O OAF PGW . . . F 4 37.481 -32.327 233.637 1 145.47 ? OAF PGW 404 A 1 HETATM 4 P P PGW . . . F 4 40.445 -33.452 231.144 1 140.35 ? P PGW 404 A 1 HETATM 5 C C01 PGW . . . F 4 36.958 -31.342 229.765 1 103.43 ? C01 PGW 404 A 1 HETATM 6 C C1 PGW . . . F 4 39.537 -29.583 227.803 1 80.51 ? C1 PGW 404 A 1 HETATM 7 O O01 PGW . . . F 4 38.759 -29.915 228.984 1 90.54 ? O01 PGW 404 A 1 HETATM 8 C C02 PGW . . . F 4 38.161 -31.201 228.835 1 102.66 ? C02 PGW 404 A 1 HETATM 9 C C2 PGW . . . F 4 40.183 -28.233 227.639 1 70.9 ? C2 PGW 404 A 1 HETATM 10 O O02 PGW . . . F 4 39.661 -30.42 226.929 1 91.34 ? O02 PGW 404 A 1 HETATM 11 C C03 PGW . . . F 4 39.207 -32.271 229.136 1 116.55 ? C03 PGW 404 A 1 HETATM 12 C C3 PGW . . . F 4 39.882 -27.758 226.224 1 69.47 ? C3 PGW 404 A 1 HETATM 13 O O03 PGW . . . F 4 35.797 -30.85 229.095 1 102.13 ? O03 PGW 404 A 1 HETATM 14 C C04 PGW . . . F 4 38.501 -34.284 232.67 1 144.92 ? C04 PGW 404 A 1 HETATM 15 C C4 PGW . . . F 4 41.156 -27.444 225.455 1 69.27 ? C4 PGW 404 A 1 HETATM 16 O O04 PGW . . . F 4 34.29 -31.94 230.48 1 110.71 ? O04 PGW 404 A 1 HETATM 17 C C05 PGW . . . F 4 37.774 -33.707 233.876 1 145.33 ? C05 PGW 404 A 1 HETATM 18 C C5 PGW . . . F 4 41.694 -26.072 225.829 1 64.14 ? C5 PGW 404 A 1 HETATM 19 C C06 PGW . . . F 4 41.246 -20.38 222.598 1 61.94 ? C06 PGW 404 A 1 HETATM 20 C C6 PGW . . . F 4 41.242 -25.01 224.834 1 59.11 ? C6 PGW 404 A 1 HETATM 21 C C07 PGW . . . F 4 40.032 -19.499 222.313 1 77.41 ? C07 PGW 404 A 1 HETATM 22 C C7 PGW . . . F 4 42.439 -24.185 224.374 1 60.36 ? C7 PGW 404 A 1 HETATM 23 C C08 PGW . . . F 4 39.926 -19.146 220.831 1 79.36 ? C08 PGW 404 A 1 HETATM 24 C C8 PGW . . . F 4 41.982 -22.964 223.588 1 75.27 ? C8 PGW 404 A 1 HETATM 25 C C09 PGW . . . F 4 39.082 -17.892 220.608 1 78.67 ? C09 PGW 404 A 1 HETATM 26 C C9 PGW . . . F 4 41.671 -21.84 224.544 1 72.06 ? C9 PGW 404 A 1 HETATM 27 C C10 PGW . . . F 4 41.339 -20.638 224.081 1 63.65 ? C10 PGW 404 A 1 HETATM 28 C C11 PGW . . . F 4 37.586 -18.181 220.698 1 77.33 ? C11 PGW 404 A 1 HETATM 29 O O11 PGW . . . F 4 39.266 -32.537 230.535 1 131.02 ? O11 PGW 404 A 1 HETATM 30 C C12 PGW . . . F 4 36.863 -17.533 219.522 1 85.53 ? C12 PGW 404 A 1 HETATM 31 O O12 PGW . . . F 4 39.844 -33.808 232.595 1 144.72 ? O12 PGW 404 A 1 HETATM 32 C C13 PGW . . . F 4 35.388 -17.908 219.492 1 85.17 ? C13 PGW 404 A 1 HETATM 33 O O13 PGW . . . F 4 40.51 -34.723 230.329 1 140.08 ? O13 PGW 404 A 1 HETATM 34 C C14 PGW . . . F 4 34.612 -17.135 220.532 1 83.17 ? C14 PGW 404 A 1 HETATM 35 O O14 PGW . . . F 4 41.674 -32.585 231.299 1 135.43 ? O14 PGW 404 A 1 HETATM 36 C C15 PGW . . . F 4 32.032 -23.244 227.584 1 65.8 ? C15 PGW 404 A 1 HETATM 37 C C16 PGW . . . F 4 32.522 -22.77 226.22 1 63.22 ? C16 PGW 404 A 1 HETATM 38 C C17 PGW . . . F 4 32.253 -23.792 225.121 1 64.95 ? C17 PGW 404 A 1 HETATM 39 C C18 PGW . . . F 4 32.612 -23.223 223.749 1 61.53 ? C18 PGW 404 A 1 HETATM 40 C C19 PGW . . . F 4 34.473 -31.367 229.418 1 103.47 ? C19 PGW 404 A 1 HETATM 41 C C20 PGW . . . F 4 33.343 -31.215 228.426 1 96.94 ? C20 PGW 404 A 1 HETATM 42 C C21 PGW . . . F 4 33.144 -29.748 228.062 1 87.08 ? C21 PGW 404 A 1 HETATM 43 C C22 PGW . . . F 4 31.886 -29.19 228.717 1 76.43 ? C22 PGW 404 A 1 HETATM 44 C C23 PGW . . . F 4 31.699 -27.717 228.379 1 69.89 ? C23 PGW 404 A 1 HETATM 45 C C24 PGW . . . F 4 30.475 -27.149 229.083 1 70.63 ? C24 PGW 404 A 1 HETATM 46 C C25 PGW . . . F 4 30.487 -25.627 229.031 1 70.26 ? C25 PGW 404 A 1 HETATM 47 C C26 PGW . . . F 4 30.363 -25.119 227.6 1 77.71 ? C26 PGW 404 A 1 HETATM 48 C C27 PGW . . . F 4 30.554 -23.608 227.543 1 76.13 ? C27 PGW 404 A 1 HETATM 49 C C28 PGW . . . F 4 32.517 -24.273 222.645 1 54.71 ? C28 PGW 404 A 1 HETATM 50 C C29 PGW . . . F 4 33.001 -24.727 220.205 1 49.11 ? C29 PGW 404 A 1 HETATM 51 C C30 PGW . . . F 4 32.878 -23.671 221.288 1 58.47 ? C30 PGW 404 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 51 #