data_6TQ4 # _model_server_result.job_id 4I6REm4jD-S4ZEnWj87XIA _model_server_result.datetime_utc '2024-11-04 20:23:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tq4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":408}' # _entry.id 6TQ4 # _exptl.entry_id 6TQ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 308.434 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl 1-thio-beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.33 _cell.angle_gamma 90 _cell.entry_id 6TQ4 _cell.length_a 59.339 _cell.length_b 145.892 _cell.length_c 71.341 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TQ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,Y 1 1 B,P,Q,R,S,T,U,V,W,X,Z 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N ? 5 T N N ? 5 U N N ? 5 V N N ? 5 W N N ? 5 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 95 A CYS 119 1_555 A SG CYS 178 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 B SG CYS 95 B CYS 119 1_555 B SG CYS 178 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 A OD1 ASP 68 A ASP 92 1_555 O NA NA . A NA 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.987 ? metalc ? metalc2 A OH TYR 287 A TYR 311 1_555 O NA NA . A NA 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.814 ? # _chem_comp.formula 'C14 H28 O5 S' _chem_comp.formula_weight 308.434 _chem_comp.id SOG _chem_comp.mon_nstd_flag . _chem_comp.name 'octyl 1-thio-beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms '2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4,5-TRIOL;1-S-OCTYL-BETA-D-THIOGLUCOSIDE;octyl 1-thio-beta-D-glucoside;octyl 1-thio-D-glucoside;octyl 1-thio-glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 SOG sing 476 n n C1 S1 SOG sing 477 n n C1 O5 SOG sing 478 n n C1 H1 SOG sing 479 n n C2 C3 SOG sing 480 n n C2 O2 SOG sing 481 n n C2 H2 SOG sing 482 n n C3 C4 SOG sing 483 n n C3 O3 SOG sing 484 n n C3 H3 SOG sing 485 n n C4 C5 SOG sing 486 n n C4 O4 SOG sing 487 n n C4 H4 SOG sing 488 n n C5 C6 SOG sing 489 n n C5 O5 SOG sing 490 n n C5 H5 SOG sing 491 n n C6 O6 SOG sing 492 n n C6 H61 SOG sing 493 n n C6 H62 SOG sing 494 n n C1' C2' SOG sing 495 n n C1' S1 SOG sing 496 n n C1' "H1'1" SOG sing 497 n n C1' "H1'2" SOG sing 498 n n C2' C3' SOG sing 499 n n C2' "H2'1" SOG sing 500 n n C2' "H2'2" SOG sing 501 n n C3' C4' SOG sing 502 n n C3' "H3'1" SOG sing 503 n n C3' "H3'2" SOG sing 504 n n C4' C5' SOG sing 505 n n C4' "H4'1" SOG sing 506 n n C4' "H4'2" SOG sing 507 n n C5' C6' SOG sing 508 n n C5' "H5'1" SOG sing 509 n n C5' "H5'2" SOG sing 510 n n C6' C7' SOG sing 511 n n C6' "H6'1" SOG sing 512 n n C6' "H6'2" SOG sing 513 n n C7' C8' SOG sing 514 n n C7' "H7'1" SOG sing 515 n n C7' "H7'2" SOG sing 516 n n C8' "H8'1" SOG sing 517 n n C8' "H8'2" SOG sing 518 n n C8' "H8'3" SOG sing 519 n n O2 HO2 SOG sing 520 n n O3 HO3 SOG sing 521 n n O4 HO4 SOG sing 522 n n O6 HO6 SOG sing 523 n n # _atom_sites.entry_id 6TQ4 _atom_sites.fract_transf_matrix[1][1] 0.016852 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006923 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006854 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015154 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NV8 A 1 401 401 NV8 UNL . D 3 SO4 A 1 402 1 SO4 SO4 . E 3 SO4 A 1 403 4 SO4 SO4 . F 4 PGW A 1 404 2 PGW PGW . G 5 SOG A 1 405 2 SOG SOG . H 5 SOG A 1 406 4 SOG SOG . I 5 SOG A 1 407 5 SOG SOG . J 5 SOG A 1 408 6 SOG SOG . K 5 SOG A 1 409 16 SOG SOG . L 5 SOG A 1 410 17 SOG SOG . M 5 SOG A 1 411 19 SOG SOG . N 5 SOG A 1 412 20 SOG SOG . O 6 NA A 1 413 1 NA NA . P 2 NV8 B 1 401 401 NV8 UNL . Q 3 SO4 B 1 402 2 SO4 SO4 . R 3 SO4 B 1 403 3 SO4 SO4 . S 4 PGW B 1 404 1 PGW PGW . T 5 SOG B 1 405 14 SOG SOG . U 5 SOG B 1 406 15 SOG SOG . V 5 SOG B 1 407 18 SOG SOG . W 5 SOG B 1 408 21 SOG SOG . X 5 SOG B 1 409 22 SOG SOG . Y 7 HOH A 1 501 24 HOH HOH . Y 7 HOH A 2 502 11 HOH HOH . Y 7 HOH A 3 503 8 HOH HOH . Y 7 HOH A 4 504 4 HOH HOH . Y 7 HOH A 5 505 6 HOH HOH . Y 7 HOH A 6 506 10 HOH HOH . Y 7 HOH A 7 507 18 HOH HOH . Y 7 HOH A 8 508 12 HOH HOH . Y 7 HOH A 9 509 2 HOH HOH . Y 7 HOH A 10 510 1 HOH HOH . Y 7 HOH A 11 511 3 HOH HOH . Y 7 HOH A 12 512 31 HOH HOH . Y 7 HOH A 13 513 15 HOH HOH . Y 7 HOH A 14 514 30 HOH HOH . Y 7 HOH A 15 515 38 HOH HOH . Y 7 HOH A 16 516 13 HOH HOH . Y 7 HOH A 17 517 19 HOH HOH . Y 7 HOH A 18 518 33 HOH HOH . Y 7 HOH A 19 519 21 HOH HOH . Y 7 HOH A 20 520 16 HOH HOH . Y 7 HOH A 21 521 26 HOH HOH . Y 7 HOH A 22 522 28 HOH HOH . Y 7 HOH A 23 523 39 HOH HOH . Y 7 HOH A 24 524 25 HOH HOH . Y 7 HOH A 25 525 32 HOH HOH . Y 7 HOH A 26 526 27 HOH HOH . Y 7 HOH A 27 527 36 HOH HOH . Z 7 HOH B 1 501 42 HOH HOH . Z 7 HOH B 2 502 5 HOH HOH . Z 7 HOH B 3 503 17 HOH HOH . Z 7 HOH B 4 504 9 HOH HOH . Z 7 HOH B 5 505 23 HOH HOH . Z 7 HOH B 6 506 43 HOH HOH . Z 7 HOH B 7 507 7 HOH HOH . Z 7 HOH B 8 508 29 HOH HOH . Z 7 HOH B 9 509 41 HOH HOH . Z 7 HOH B 10 510 35 HOH HOH . Z 7 HOH B 11 511 40 HOH HOH . Z 7 HOH B 12 512 37 HOH HOH . Z 7 HOH B 13 513 34 HOH HOH . Z 7 HOH B 14 514 20 HOH HOH . Z 7 HOH B 15 515 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SOG . . . J 5 10.412 -14.916 220.993 1 145.96 ? C1 SOG 408 A 1 HETATM 2 C C2 SOG . . . J 5 9.982 -13.449 221.055 1 145.67 ? C2 SOG 408 A 1 HETATM 3 C C3 SOG . . . J 5 9.774 -12.828 219.675 1 141.82 ? C3 SOG 408 A 1 HETATM 4 C C4 SOG . . . J 5 8.82 -13.662 218.825 1 141.29 ? C4 SOG 408 A 1 HETATM 5 C C5 SOG . . . J 5 8.662 -15.067 219.391 1 145.81 ? C5 SOG 408 A 1 HETATM 6 C C6 SOG . . . J 5 8.048 -15.993 218.344 1 149.44 ? C6 SOG 408 A 1 HETATM 7 C C1' SOG . . . J 5 12.359 -16.762 221.379 1 145.02 ? C1' SOG 408 A 1 HETATM 8 S S1 SOG . . . J 5 12.173 -15.032 221.095 1 144.54 ? S1 SOG 408 A 1 HETATM 9 O O2 SOG . . . J 5 8.769 -13.348 221.809 1 146.26 ? O2 SOG 408 A 1 HETATM 10 O O3 SOG . . . J 5 11.031 -12.681 219.003 1 135.45 ? O3 SOG 408 A 1 HETATM 11 O O4 SOG . . . J 5 7.539 -13.025 218.774 1 138.23 ? O4 SOG 408 A 1 HETATM 12 O O5 SOG . . . J 5 9.941 -15.551 219.8 1 148.02 ? O5 SOG 408 A 1 HETATM 13 O O6 SOG . . . J 5 7.138 -16.909 218.966 1 149.96 ? O6 SOG 408 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #