data_6TQ4
#
_model_server_result.job_id            kIS69MX8EOBieC4QrFhMVQ 
_model_server_result.datetime_utc      '2024-11-04 20:19:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6tq4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":408}' 
#
_entry.id    6TQ4 
#
_exptl.entry_id    6TQ4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              308.434 
_entity.id                          5 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl 1-thio-beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    13 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.33 
_cell.angle_gamma         90 
_cell.entry_id            6TQ4 
_cell.length_a            59.339 
_cell.length_b            145.892 
_cell.length_c            71.341 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6TQ4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,N,O,Y 1 1 
B,P,Q,R,S,T,U,V,W,X,Z 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 L N N 
? 5 M N N 
? 5 N N N 
? 5 T N N 
? 5 U N N 
? 5 V N N 
? 5 W N N 
? 5 X N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 95 A CYS 119 1_555 A SG CYS 178 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf2 B SG CYS 95 B CYS 119 1_555 B SG CYS 178 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc1 A OD1 ASP 68 A ASP 92 1_555 O NA NA . A NA 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.987 ? 
metalc ? metalc2 A OH TYR 287 A TYR 311 1_555 O NA NA . A NA 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.814 ? 
#
_chem_comp.formula           'C14 H28 O5 S' 
_chem_comp.formula_weight    308.434 
_chem_comp.id                SOG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'octyl 1-thio-beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     '2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4,5-TRIOL;1-S-OCTYL-BETA-D-THIOGLUCOSIDE;octyl 1-thio-beta-D-glucoside;octyl 1-thio-D-glucoside;octyl 1-thio-glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 SOG sing 476 n n 
C1 S1 SOG sing 477 n n 
C1 O5 SOG sing 478 n n 
C1 H1 SOG sing 479 n n 
C2 C3 SOG sing 480 n n 
C2 O2 SOG sing 481 n n 
C2 H2 SOG sing 482 n n 
C3 C4 SOG sing 483 n n 
C3 O3 SOG sing 484 n n 
C3 H3 SOG sing 485 n n 
C4 C5 SOG sing 486 n n 
C4 O4 SOG sing 487 n n 
C4 H4 SOG sing 488 n n 
C5 C6 SOG sing 489 n n 
C5 O5 SOG sing 490 n n 
C5 H5 SOG sing 491 n n 
C6 O6 SOG sing 492 n n 
C6 H61 SOG sing 493 n n 
C6 H62 SOG sing 494 n n 
C1' C2' SOG sing 495 n n 
C1' S1 SOG sing 496 n n 
C1' "H1'1" SOG sing 497 n n 
C1' "H1'2" SOG sing 498 n n 
C2' C3' SOG sing 499 n n 
C2' "H2'1" SOG sing 500 n n 
C2' "H2'2" SOG sing 501 n n 
C3' C4' SOG sing 502 n n 
C3' "H3'1" SOG sing 503 n n 
C3' "H3'2" SOG sing 504 n n 
C4' C5' SOG sing 505 n n 
C4' "H4'1" SOG sing 506 n n 
C4' "H4'2" SOG sing 507 n n 
C5' C6' SOG sing 508 n n 
C5' "H5'1" SOG sing 509 n n 
C5' "H5'2" SOG sing 510 n n 
C6' C7' SOG sing 511 n n 
C6' "H6'1" SOG sing 512 n n 
C6' "H6'2" SOG sing 513 n n 
C7' C8' SOG sing 514 n n 
C7' "H7'1" SOG sing 515 n n 
C7' "H7'2" SOG sing 516 n n 
C8' "H8'1" SOG sing 517 n n 
C8' "H8'2" SOG sing 518 n n 
C8' "H8'3" SOG sing 519 n n 
O2 HO2 SOG sing 520 n n 
O3 HO3 SOG sing 521 n n 
O4 HO4 SOG sing 522 n n 
O6 HO6 SOG sing 523 n n 
#
_atom_sites.entry_id                     6TQ4 
_atom_sites.fract_transf_matrix[1][1]    0.016852 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006923 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006854 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015154 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NV8 A 1 401 401 NV8 UNL . 
D 3 SO4 A 1 402 1 SO4 SO4 . 
E 3 SO4 A 1 403 4 SO4 SO4 . 
F 4 PGW A 1 404 2 PGW PGW . 
G 5 SOG A 1 405 2 SOG SOG . 
H 5 SOG A 1 406 4 SOG SOG . 
I 5 SOG A 1 407 5 SOG SOG . 
J 5 SOG A 1 408 6 SOG SOG . 
K 5 SOG A 1 409 16 SOG SOG . 
L 5 SOG A 1 410 17 SOG SOG . 
M 5 SOG A 1 411 19 SOG SOG . 
N 5 SOG A 1 412 20 SOG SOG . 
O 6 NA A 1 413 1 NA NA . 
P 2 NV8 B 1 401 401 NV8 UNL . 
Q 3 SO4 B 1 402 2 SO4 SO4 . 
R 3 SO4 B 1 403 3 SO4 SO4 . 
S 4 PGW B 1 404 1 PGW PGW . 
T 5 SOG B 1 405 14 SOG SOG . 
U 5 SOG B 1 406 15 SOG SOG . 
V 5 SOG B 1 407 18 SOG SOG . 
W 5 SOG B 1 408 21 SOG SOG . 
X 5 SOG B 1 409 22 SOG SOG . 
Y 7 HOH A 1 501 24 HOH HOH . 
Y 7 HOH A 2 502 11 HOH HOH . 
Y 7 HOH A 3 503 8 HOH HOH . 
Y 7 HOH A 4 504 4 HOH HOH . 
Y 7 HOH A 5 505 6 HOH HOH . 
Y 7 HOH A 6 506 10 HOH HOH . 
Y 7 HOH A 7 507 18 HOH HOH . 
Y 7 HOH A 8 508 12 HOH HOH . 
Y 7 HOH A 9 509 2 HOH HOH . 
Y 7 HOH A 10 510 1 HOH HOH . 
Y 7 HOH A 11 511 3 HOH HOH . 
Y 7 HOH A 12 512 31 HOH HOH . 
Y 7 HOH A 13 513 15 HOH HOH . 
Y 7 HOH A 14 514 30 HOH HOH . 
Y 7 HOH A 15 515 38 HOH HOH . 
Y 7 HOH A 16 516 13 HOH HOH . 
Y 7 HOH A 17 517 19 HOH HOH . 
Y 7 HOH A 18 518 33 HOH HOH . 
Y 7 HOH A 19 519 21 HOH HOH . 
Y 7 HOH A 20 520 16 HOH HOH . 
Y 7 HOH A 21 521 26 HOH HOH . 
Y 7 HOH A 22 522 28 HOH HOH . 
Y 7 HOH A 23 523 39 HOH HOH . 
Y 7 HOH A 24 524 25 HOH HOH . 
Y 7 HOH A 25 525 32 HOH HOH . 
Y 7 HOH A 26 526 27 HOH HOH . 
Y 7 HOH A 27 527 36 HOH HOH . 
Z 7 HOH B 1 501 42 HOH HOH . 
Z 7 HOH B 2 502 5 HOH HOH . 
Z 7 HOH B 3 503 17 HOH HOH . 
Z 7 HOH B 4 504 9 HOH HOH . 
Z 7 HOH B 5 505 23 HOH HOH . 
Z 7 HOH B 6 506 43 HOH HOH . 
Z 7 HOH B 7 507 7 HOH HOH . 
Z 7 HOH B 8 508 29 HOH HOH . 
Z 7 HOH B 9 509 41 HOH HOH . 
Z 7 HOH B 10 510 35 HOH HOH . 
Z 7 HOH B 11 511 40 HOH HOH . 
Z 7 HOH B 12 512 37 HOH HOH . 
Z 7 HOH B 13 513 34 HOH HOH . 
Z 7 HOH B 14 514 20 HOH HOH . 
Z 7 HOH B 15 515 14 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 SOG . . . W 5 21.737 -8.313 196.368 1 150.48 ? C1 SOG 408 B 1 
HETATM 2 C C2 SOG . . . W 5 20.805 -7.104 196.428 1 145.61 ? C2 SOG 408 B 1 
HETATM 3 C C3 SOG . . . W 5 19.692 -7.264 195.398 1 146.81 ? C3 SOG 408 B 1 
HETATM 4 C C4 SOG . . . W 5 20.305 -7.426 194.01 1 148.64 ? C4 SOG 408 B 1 
HETATM 5 C C5 SOG . . . W 5 21.339 -8.553 193.999 1 148.4 ? C5 SOG 408 B 1 
HETATM 6 C C6 SOG . . . W 5 22.061 -8.612 192.654 1 141.27 ? C6 SOG 408 B 1 
HETATM 7 C C1' SOG . . . W 5 23.715 -9.802 197.626 1 134.82 ? C1' SOG 408 B 1 
HETATM 8 C C2' SOG . . . W 5 24.733 -9.957 198.76 1 122.51 ? C2' SOG 408 B 1 
HETATM 9 C C3' SOG . . . W 5 24.994 -11.43 199.082 1 117.59 ? C3' SOG 408 B 1 
HETATM 10 C C4' SOG . . . W 5 26.007 -11.633 200.209 1 110.65 ? C4' SOG 408 B 1 
HETATM 11 C C5' SOG . . . W 5 26.345 -13.108 200.432 1 103.86 ? C5' SOG 408 B 1 
HETATM 12 C C6' SOG . . . W 5 25.235 -13.859 201.164 1 106.92 ? C6' SOG 408 B 1 
HETATM 13 C C7' SOG . . . W 5 25.695 -15.232 201.652 1 105.94 ? C7' SOG 408 B 1 
HETATM 14 C C8' SOG . . . W 5 24.702 -15.824 202.629 1 102.69 ? C8' SOG 408 B 1 
HETATM 15 S S1 SOG . . . W 5 23.011 -8.18 197.594 1 156.73 ? S1 SOG 408 B 1 
HETATM 16 O O2 SOG . . . W 5 20.252 -6.947 197.739 1 141.49 ? O2 SOG 408 B 1 
HETATM 17 O O3 SOG . . . W 5 18.823 -6.128 195.425 1 146.08 ? O3 SOG 408 B 1 
HETATM 18 O O4 SOG . . . W 5 19.279 -7.7 193.047 1 149.9 ? O4 SOG 408 B 1 
HETATM 19 O O5 SOG . . . W 5 22.3 -8.387 195.055 1 151.27 ? O5 SOG 408 B 1 
HETATM 20 O O6 SOG . . . W 5 21.142 -8.968 191.616 1 135.89 ? O6 SOG 408 B 1 
#
_model_server_stats.io_time_ms              78 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           20 
#