data_6TQ6 # _model_server_result.job_id KUmF0KNIdlPhA29Z8bJxmw _model_server_result.datetime_utc '2024-11-16 13:27:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tq6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 6TQ6 # _exptl.entry_id 6TQ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 749.007 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.56 _cell.angle_gamma 90 _cell.entry_id 6TQ6 _cell.length_a 59.834 _cell.length_b 147.072 _cell.length_c 72.26 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TQ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,W 1 1 B,L,M,N,O,P,Q,R,S,T,U,V,X 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 95 A CYS 119 1_555 A SG CYS 178 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 B SG CYS 95 B CYS 119 1_555 B SG CYS 178 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'C40 H77 O10 P' _chem_comp.formula_weight 749.007 _chem_comp.id PGW _chem_comp.mon_nstd_flag . _chem_comp.name '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Palmitoyl-2-Oleoyl-sn-Glycero-3-[Phospho-(1-glycerol)];PHOSPHATIDYLGLYCEROL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAD C05 PGW sing 316 n n CAD HAD PGW sing 317 n n CAD HADA PGW sing 318 n n OAE CAD PGW sing 319 n n OAE HOAE PGW sing 320 n n OAF C05 PGW sing 321 n n OAF HOAF PGW sing 322 n n P O13 PGW sing 323 n n P O11 PGW sing 324 n n C01 O03 PGW sing 325 n n C01 C02 PGW sing 326 n n C01 H01 PGW sing 327 n n C01 H01A PGW sing 328 n n C1 C2 PGW sing 329 n n O01 C1 PGW sing 330 n n C02 O01 PGW sing 331 n n C02 H02 PGW sing 332 n n C2 C3 PGW sing 333 n n C2 H2 PGW sing 334 n n C2 H2A PGW sing 335 n n O02 C1 PGW doub 336 n n C03 C02 PGW sing 337 n n C03 H03 PGW sing 338 n n C03 H03A PGW sing 339 n n C3 C4 PGW sing 340 n n C3 H3 PGW sing 341 n n C3 H3A PGW sing 342 n n C04 C05 PGW sing 343 n n C04 O12 PGW sing 344 n n C04 H04 PGW sing 345 n n C04 H04A PGW sing 346 n n C4 C5 PGW sing 347 n n C4 H4 PGW sing 348 n n C4 H4A PGW sing 349 n n O04 C19 PGW doub 350 n n C05 H05 PGW sing 351 n n C5 C6 PGW sing 352 n n C5 H5 PGW sing 353 n n C5 H5A PGW sing 354 n n C06 C07 PGW sing 355 n n C06 H06 PGW sing 356 n n C06 H06A PGW sing 357 n n C6 C7 PGW sing 358 n n C6 H6 PGW sing 359 n n C6 H6A PGW sing 360 n n C07 H07 PGW sing 361 n n C07 H07A PGW sing 362 n n C7 C8 PGW sing 363 n n C7 H7 PGW sing 364 n n C7 H7A PGW sing 365 n n C08 C07 PGW sing 366 n n C08 H08 PGW sing 367 n n C08 H08A PGW sing 368 n n C8 C9 PGW sing 369 n n C8 H8 PGW sing 370 n n C8 H8A PGW sing 371 n n C09 C08 PGW sing 372 n n C09 C11 PGW sing 373 n n C09 H09 PGW sing 374 n n C09 H09A PGW sing 375 n n C9 C10 PGW doub 376 z n C10 C06 PGW sing 377 n n C11 H11 PGW sing 378 n n C11 H11A PGW sing 379 n n O11 C03 PGW sing 380 n n C12 C11 PGW sing 381 n n C12 H12 PGW sing 382 n n C12 H12A PGW sing 383 n n O12 P PGW sing 384 n n C13 C12 PGW sing 385 n n C13 C14 PGW sing 386 n n C13 H13 PGW sing 387 n n C13 H13A PGW sing 388 n n O13 HO13 PGW sing 389 n n C14 H14 PGW sing 390 n n C14 H14A PGW sing 391 n n C14 H14B PGW sing 392 n n O14 P PGW doub 393 n n C15 C16 PGW sing 394 n n C15 H15 PGW sing 395 n n C15 H15A PGW sing 396 n n C16 H16 PGW sing 397 n n C16 H16A PGW sing 398 n n C17 C16 PGW sing 399 n n C17 C18 PGW sing 400 n n C17 H17 PGW sing 401 n n C17 H17A PGW sing 402 n n C18 C28 PGW sing 403 n n C18 H18 PGW sing 404 n n C18 H18A PGW sing 405 n n C19 O03 PGW sing 406 n n C19 C20 PGW sing 407 n n C20 C21 PGW sing 408 n n C20 H20 PGW sing 409 n n C20 H20A PGW sing 410 n n C21 C22 PGW sing 411 n n C21 H21 PGW sing 412 n n C21 H21A PGW sing 413 n n C22 C23 PGW sing 414 n n C22 H22 PGW sing 415 n n C22 H22A PGW sing 416 n n C23 C24 PGW sing 417 n n C23 H23 PGW sing 418 n n C23 H23A PGW sing 419 n n C24 C25 PGW sing 420 n n C24 H24 PGW sing 421 n n C24 H24A PGW sing 422 n n C25 C26 PGW sing 423 n n C25 H25 PGW sing 424 n n C25 H25A PGW sing 425 n n C26 C27 PGW sing 426 n n C26 H26 PGW sing 427 n n C26 H26A PGW sing 428 n n C27 C15 PGW sing 429 n n C27 H27 PGW sing 430 n n C27 H27A PGW sing 431 n n C28 H28 PGW sing 432 n n C28 H28A PGW sing 433 n n C29 H29 PGW sing 434 n n C29 H29A PGW sing 435 n n C29 H29B PGW sing 436 n n C30 C28 PGW sing 437 n n C30 C29 PGW sing 438 n n C30 H30 PGW sing 439 n n C30 H30A PGW sing 440 n n C9 H9 PGW sing 441 n n C10 H10 PGW sing 442 n n # _atom_sites.entry_id 6TQ6 _atom_sites.fract_transf_matrix[1][1] 0.016713 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006603 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006799 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01488 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NVH A 1 401 401 NVH UNL . D 3 SO4 A 1 402 3 SO4 SO4 . E 3 SO4 A 1 403 4 SO4 SO4 . F 4 PGW A 1 404 2 PGW PGW . G 5 SOG A 1 405 12 SOG SOG . H 5 SOG A 1 406 15 SOG SOG . I 5 SOG A 1 407 17 SOG SOG . J 5 SOG A 1 408 19 SOG SOG . K 6 PG4 A 1 409 2 PG4 PG4 . L 2 NVH B 1 401 401 NVH UNL . M 3 SO4 B 1 402 1 SO4 SO4 . N 3 SO4 B 1 403 2 SO4 SO4 . O 4 PGW B 1 404 1 PGW PGW . P 5 SOG B 1 405 1 SOG SOG . Q 5 SOG B 1 406 3 SOG SOG . R 5 SOG B 1 407 4 SOG SOG . S 5 SOG B 1 408 16 SOG SOG . T 5 SOG B 1 409 18 SOG SOG . U 5 SOG B 1 410 21 SOG SOG . V 6 PG4 B 1 411 1 PG4 PG4 . W 7 HOH A 1 501 3 HOH HOH . W 7 HOH A 2 502 18 HOH HOH . W 7 HOH A 3 503 17 HOH HOH . W 7 HOH A 4 504 2 HOH HOH . W 7 HOH A 5 505 11 HOH HOH . W 7 HOH A 6 506 5 HOH HOH . W 7 HOH A 7 507 16 HOH HOH . W 7 HOH A 8 508 13 HOH HOH . W 7 HOH A 9 509 4 HOH HOH . W 7 HOH A 10 510 10 HOH HOH . W 7 HOH A 11 511 26 HOH HOH . W 7 HOH A 12 512 12 HOH HOH . W 7 HOH A 13 513 14 HOH HOH . W 7 HOH A 14 514 1 HOH HOH . X 7 HOH B 1 501 23 HOH HOH . X 7 HOH B 2 502 20 HOH HOH . X 7 HOH B 3 503 24 HOH HOH . X 7 HOH B 4 504 9 HOH HOH . X 7 HOH B 5 505 6 HOH HOH . X 7 HOH B 6 506 25 HOH HOH . X 7 HOH B 7 507 7 HOH HOH . X 7 HOH B 8 508 21 HOH HOH . X 7 HOH B 9 509 8 HOH HOH . X 7 HOH B 10 510 15 HOH HOH . X 7 HOH B 11 511 22 HOH HOH . X 7 HOH B 12 512 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAD PGW . . . F 4 -41.593 52.372 78.463 1 119.58 ? CAD PGW 404 A 1 HETATM 2 O OAE PGW . . . F 4 -43.006 52.413 78.239 1 121.26 ? OAE PGW 404 A 1 HETATM 3 O OAF PGW . . . F 4 -41.183 50.022 78.882 1 118.75 ? OAF PGW 404 A 1 HETATM 4 P P PGW . . . F 4 -37.807 50.199 75.79 1 120.2 ? P PGW 404 A 1 HETATM 5 C C01 PGW . . . F 4 -38.347 46.749 78.198 1 94.25 ? C01 PGW 404 A 1 HETATM 6 C C1 PGW . . . F 4 -35.01 45.783 78.209 1 91.84 ? C1 PGW 404 A 1 HETATM 7 O O01 PGW . . . F 4 -36.055 46.487 77.477 1 93.23 ? O01 PGW 404 A 1 HETATM 8 C C02 PGW . . . F 4 -36.918 47.285 78.286 1 95.33 ? C02 PGW 404 A 1 HETATM 9 C C2 PGW . . . F 4 -33.638 45.649 77.599 1 85.28 ? C2 PGW 404 A 1 HETATM 10 O O02 PGW . . . F 4 -35.25 45.281 79.295 1 96.31 ? O02 PGW 404 A 1 HETATM 11 C C03 PGW . . . F 4 -36.853 48.741 77.817 1 105.98 ? C03 PGW 404 A 1 HETATM 12 C C3 PGW . . . F 4 -33.207 44.19 77.65 1 79.79 ? C3 PGW 404 A 1 HETATM 13 O O03 PGW . . . F 4 -39.103 47.349 79.249 1 96.23 ? O03 PGW 404 A 1 HETATM 14 C C04 PGW . . . F 4 -39.58 51.244 77.518 1 120.3 ? C04 PGW 404 A 1 HETATM 15 C C4 PGW . . . F 4 -32.196 44.013 78.772 1 77.38 ? C4 PGW 404 A 1 HETATM 16 O O04 PGW . . . F 4 -41.343 46.941 79.588 1 96.95 ? O04 PGW 404 A 1 HETATM 17 C C05 PGW . . . F 4 -41.047 51.063 77.903 1 119.31 ? C05 PGW 404 A 1 HETATM 18 C C5 PGW . . . F 4 -30.909 43.392 78.25 1 76.48 ? C5 PGW 404 A 1 HETATM 19 C C06 PGW . . . F 4 -29.017 37.692 80.263 1 70.95 ? C06 PGW 404 A 1 HETATM 20 C C6 PGW . . . F 4 -30.982 41.877 78.358 1 76.15 ? C6 PGW 404 A 1 HETATM 21 C C07 PGW . . . F 4 -29.645 36.519 81.008 1 77.8 ? C07 PGW 404 A 1 HETATM 22 C C7 PGW . . . F 4 -29.841 41.225 77.59 1 75.13 ? C7 PGW 404 A 1 HETATM 23 C C08 PGW . . . F 4 -28.945 36.175 82.315 1 82.75 ? C08 PGW 404 A 1 HETATM 24 C C8 PGW . . . F 4 -29.215 40.137 78.456 1 73.45 ? C8 PGW 404 A 1 HETATM 25 C C09 PGW . . . F 4 -29.992 35.65 83.294 1 87.87 ? C09 PGW 404 A 1 HETATM 26 C C9 PGW . . . F 4 -29.85 38.803 78.148 1 71.93 ? C9 PGW 404 A 1 HETATM 27 C C10 PGW . . . F 4 -29.739 37.734 78.937 1 70.68 ? C10 PGW 404 A 1 HETATM 28 C C11 PGW . . . F 4 -29.518 35.698 84.743 1 88.46 ? C11 PGW 404 A 1 HETATM 29 O O11 PGW . . . F 4 -37.237 48.835 76.442 1 116.44 ? O11 PGW 404 A 1 HETATM 30 C C12 PGW . . . F 4 -30.494 35.01 85.699 1 88.37 ? C12 PGW 404 A 1 HETATM 31 O O12 PGW . . . F 4 -39.256 50.296 76.499 1 121.03 ? O12 PGW 404 A 1 HETATM 32 C C13 PGW . . . F 4 -30.785 33.546 85.363 1 89.19 ? C13 PGW 404 A 1 HETATM 33 O O13 PGW . . . F 4 -38.025 49.954 74.315 1 120.02 ? O13 PGW 404 A 1 HETATM 34 C C14 PGW . . . F 4 -29.584 32.644 85.557 1 90.89 ? C14 PGW 404 A 1 HETATM 35 O O14 PGW . . . F 4 -36.939 51.35 76.241 1 120.84 ? O14 PGW 404 A 1 HETATM 36 C C15 PGW . . . F 4 -39.082 37.914 83.669 1 54.15 ? C15 PGW 404 A 1 HETATM 37 C C16 PGW . . . F 4 -37.825 38.786 83.643 1 48.27 ? C16 PGW 404 A 1 HETATM 38 C C17 PGW . . . F 4 -36.752 38.361 84.649 1 48.25 ? C17 PGW 404 A 1 HETATM 39 C C18 PGW . . . F 4 -36.499 39.466 85.675 1 49.32 ? C18 PGW 404 A 1 HETATM 40 C C19 PGW . . . F 4 -40.201 46.666 79.92 1 92.68 ? C19 PGW 404 A 1 HETATM 41 C C20 PGW . . . F 4 -39.892 45.63 80.989 1 83.39 ? C20 PGW 404 A 1 HETATM 42 C C21 PGW . . . F 4 -41.042 45.36 81.96 1 75.24 ? C21 PGW 404 A 1 HETATM 43 C C22 PGW . . . F 4 -40.764 44.117 82.812 1 69.35 ? C22 PGW 404 A 1 HETATM 44 C C23 PGW . . . F 4 -41.565 42.903 82.339 1 65.07 ? C23 PGW 404 A 1 HETATM 45 C C24 PGW . . . F 4 -41.516 41.737 83.329 1 64.48 ? C24 PGW 404 A 1 HETATM 46 C C25 PGW . . . F 4 -41.784 40.404 82.626 1 65.47 ? C25 PGW 404 A 1 HETATM 47 C C26 PGW . . . F 4 -41.246 39.205 83.412 1 67.87 ? C26 PGW 404 A 1 HETATM 48 C C27 PGW . . . F 4 -40.142 38.427 82.69 1 60.94 ? C27 PGW 404 A 1 HETATM 49 C C28 PGW . . . F 4 -35.337 39.173 86.626 1 50.24 ? C28 PGW 404 A 1 HETATM 50 C C29 PGW . . . F 4 -33.318 40.219 87.756 1 41.39 ? C29 PGW 404 A 1 HETATM 51 C C30 PGW . . . F 4 -34.35 40.34 86.652 1 44.41 ? C30 PGW 404 A 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 38 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 995 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 51 #