data_6TQ6
#
_model_server_result.job_id            CwX5HeV7LzUqhm3VBllhQw 
_model_server_result.datetime_utc      '2024-11-16 13:35:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6tq6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":408}' 
#
_entry.id    6TQ6 
#
_exptl.entry_id    6TQ6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              308.434 
_entity.id                          5 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl 1-thio-beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.56 
_cell.angle_gamma         90 
_cell.entry_id            6TQ6 
_cell.length_a            59.834 
_cell.length_b            147.072 
_cell.length_c            72.26 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6TQ6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,W 1 1 
B,L,M,N,O,P,Q,R,S,T,U,V,X 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 P N N 
? 5 Q N N 
? 5 R N N 
? 5 S N N 
? 5 T N N 
? 5 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 95 A CYS 119 1_555 A SG CYS 178 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 B SG CYS 95 B CYS 119 1_555 B SG CYS 178 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
#
_chem_comp.formula           'C14 H28 O5 S' 
_chem_comp.formula_weight    308.434 
_chem_comp.id                SOG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'octyl 1-thio-beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     '2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4,5-TRIOL;1-S-OCTYL-BETA-D-THIOGLUCOSIDE;octyl 1-thio-beta-D-glucoside;octyl 1-thio-D-glucoside;octyl 1-thio-glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 SOG sing 500 n n 
C1 S1 SOG sing 501 n n 
C1 O5 SOG sing 502 n n 
C1 H1 SOG sing 503 n n 
C2 C3 SOG sing 504 n n 
C2 O2 SOG sing 505 n n 
C2 H2 SOG sing 506 n n 
C3 C4 SOG sing 507 n n 
C3 O3 SOG sing 508 n n 
C3 H3 SOG sing 509 n n 
C4 C5 SOG sing 510 n n 
C4 O4 SOG sing 511 n n 
C4 H4 SOG sing 512 n n 
C5 C6 SOG sing 513 n n 
C5 O5 SOG sing 514 n n 
C5 H5 SOG sing 515 n n 
C6 O6 SOG sing 516 n n 
C6 H61 SOG sing 517 n n 
C6 H62 SOG sing 518 n n 
C1' C2' SOG sing 519 n n 
C1' S1 SOG sing 520 n n 
C1' "H1'1" SOG sing 521 n n 
C1' "H1'2" SOG sing 522 n n 
C2' C3' SOG sing 523 n n 
C2' "H2'1" SOG sing 524 n n 
C2' "H2'2" SOG sing 525 n n 
C3' C4' SOG sing 526 n n 
C3' "H3'1" SOG sing 527 n n 
C3' "H3'2" SOG sing 528 n n 
C4' C5' SOG sing 529 n n 
C4' "H4'1" SOG sing 530 n n 
C4' "H4'2" SOG sing 531 n n 
C5' C6' SOG sing 532 n n 
C5' "H5'1" SOG sing 533 n n 
C5' "H5'2" SOG sing 534 n n 
C6' C7' SOG sing 535 n n 
C6' "H6'1" SOG sing 536 n n 
C6' "H6'2" SOG sing 537 n n 
C7' C8' SOG sing 538 n n 
C7' "H7'1" SOG sing 539 n n 
C7' "H7'2" SOG sing 540 n n 
C8' "H8'1" SOG sing 541 n n 
C8' "H8'2" SOG sing 542 n n 
C8' "H8'3" SOG sing 543 n n 
O2 HO2 SOG sing 544 n n 
O3 HO3 SOG sing 545 n n 
O4 HO4 SOG sing 546 n n 
O6 HO6 SOG sing 547 n n 
#
_atom_sites.entry_id                     6TQ6 
_atom_sites.fract_transf_matrix[1][1]    0.016713 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006603 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006799 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01488 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NVH A 1 401 401 NVH UNL . 
D 3 SO4 A 1 402 3 SO4 SO4 . 
E 3 SO4 A 1 403 4 SO4 SO4 . 
F 4 PGW A 1 404 2 PGW PGW . 
G 5 SOG A 1 405 12 SOG SOG . 
H 5 SOG A 1 406 15 SOG SOG . 
I 5 SOG A 1 407 17 SOG SOG . 
J 5 SOG A 1 408 19 SOG SOG . 
K 6 PG4 A 1 409 2 PG4 PG4 . 
L 2 NVH B 1 401 401 NVH UNL . 
M 3 SO4 B 1 402 1 SO4 SO4 . 
N 3 SO4 B 1 403 2 SO4 SO4 . 
O 4 PGW B 1 404 1 PGW PGW . 
P 5 SOG B 1 405 1 SOG SOG . 
Q 5 SOG B 1 406 3 SOG SOG . 
R 5 SOG B 1 407 4 SOG SOG . 
S 5 SOG B 1 408 16 SOG SOG . 
T 5 SOG B 1 409 18 SOG SOG . 
U 5 SOG B 1 410 21 SOG SOG . 
V 6 PG4 B 1 411 1 PG4 PG4 . 
W 7 HOH A 1 501 3 HOH HOH . 
W 7 HOH A 2 502 18 HOH HOH . 
W 7 HOH A 3 503 17 HOH HOH . 
W 7 HOH A 4 504 2 HOH HOH . 
W 7 HOH A 5 505 11 HOH HOH . 
W 7 HOH A 6 506 5 HOH HOH . 
W 7 HOH A 7 507 16 HOH HOH . 
W 7 HOH A 8 508 13 HOH HOH . 
W 7 HOH A 9 509 4 HOH HOH . 
W 7 HOH A 10 510 10 HOH HOH . 
W 7 HOH A 11 511 26 HOH HOH . 
W 7 HOH A 12 512 12 HOH HOH . 
W 7 HOH A 13 513 14 HOH HOH . 
W 7 HOH A 14 514 1 HOH HOH . 
X 7 HOH B 1 501 23 HOH HOH . 
X 7 HOH B 2 502 20 HOH HOH . 
X 7 HOH B 3 503 24 HOH HOH . 
X 7 HOH B 4 504 9 HOH HOH . 
X 7 HOH B 5 505 6 HOH HOH . 
X 7 HOH B 6 506 25 HOH HOH . 
X 7 HOH B 7 507 7 HOH HOH . 
X 7 HOH B 8 508 21 HOH HOH . 
X 7 HOH B 9 509 8 HOH HOH . 
X 7 HOH B 10 510 15 HOH HOH . 
X 7 HOH B 11 511 22 HOH HOH . 
X 7 HOH B 12 512 19 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 SOG . . . J 5 -49.758 34.78 95.653 1 105.77 ? C1 SOG 408 A 1 
HETATM 2 C C2 SOG . . . J 5 -50.207 35.24 94.26 1 101.64 ? C2 SOG 408 A 1 
HETATM 3 C C3 SOG . . . J 5 -50.959 36.572 94.329 1 97.93 ? C3 SOG 408 A 1 
HETATM 4 C C4 SOG . . . J 5 -52.054 36.553 95.393 1 95.68 ? C4 SOG 408 A 1 
HETATM 5 C C5 SOG . . . J 5 -51.483 36.053 96.72 1 98.69 ? C5 SOG 408 A 1 
HETATM 6 C C6 SOG . . . J 5 -52.542 36.076 97.826 1 94.01 ? C6 SOG 408 A 1 
HETATM 7 C C1' SOG . . . J 5 -49.927 32.004 96.18 1 110.84 ? C1' SOG 408 A 1 
HETATM 8 C C2' SOG . . . J 5 -49.168 31.003 97.054 1 106.35 ? C2' SOG 408 A 1 
HETATM 9 C C3' SOG . . . J 5 -49.715 30.989 98.481 1 101.91 ? C3' SOG 408 A 1 
HETATM 10 C C4' SOG . . . J 5 -48.95 30.026 99.389 1 97.68 ? C4' SOG 408 A 1 
HETATM 11 C C5' SOG . . . J 5 -47.877 30.733 100.214 1 92.01 ? C5' SOG 408 A 1 
HETATM 12 C C6' SOG . . . J 5 -46.458 30.32 99.822 1 86.81 ? C6' SOG 408 A 1 
HETATM 13 C C7' SOG . . . J 5 -45.828 31.321 98.857 1 86.24 ? C7' SOG 408 A 1 
HETATM 14 C C8' SOG . . . J 5 -44.416 31.701 99.258 1 86.86 ? C8' SOG 408 A 1 
HETATM 15 S S1 SOG . . . J 5 -48.85 33.247 95.535 1 111.94 ? S1 SOG 408 A 1 
HETATM 16 O O2 SOG . . . J 5 -49.063 35.385 93.406 1 103.12 ? O2 SOG 408 A 1 
HETATM 17 O O3 SOG . . . J 5 -51.535 36.878 93.053 1 100.36 ? O3 SOG 408 A 1 
HETATM 18 O O4 SOG . . . J 5 -52.605 37.87 95.552 1 93.28 ? O4 SOG 408 A 1 
HETATM 19 O O5 SOG . . . J 5 -50.894 34.748 96.543 1 103.33 ? O5 SOG 408 A 1 
HETATM 20 O O6 SOG . . . J 5 -52.678 37.419 98.313 1 91.4 ? O6 SOG 408 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#