data_6TQ7
#
_model_server_result.job_id            86Ii-oIJfhi3OyrnA-liYg 
_model_server_result.datetime_utc      '2025-02-18 00:42:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6tq7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    6TQ7 
#
_exptl.entry_id    6TQ7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              319.317 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-(2-methyl-1,3-benzoxazol-6-yl)-3-(1,5-naphthyridin-4-yl)urea 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.17 
_cell.angle_gamma         90 
_cell.entry_id            6TQ7 
_cell.length_a            59.766 
_cell.length_b            148.243 
_cell.length_c            71.668 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6TQ7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,W 1 1 
B,N,O,P,Q,R,S,T,U,V,X 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 N N N 
? 2 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 95 A CYS 119 1_555 A SG CYS 178 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 B SG CYS 95 B CYS 119 1_555 B SG CYS 178 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
#
_chem_comp.formula           'C17 H13 N5 O2' 
_chem_comp.formula_weight    319.317 
_chem_comp.id                NVK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-(2-methyl-1,3-benzoxazol-6-yl)-3-(1,5-naphthyridin-4-yl)urea 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C8 C7 NVK doub 237 n y 
C8 C3 NVK sing 238 n y 
N1 C3 NVK sing 239 n y 
N1 C2 NVK doub 240 n y 
C7 C6 NVK sing 241 n y 
C3 C4 NVK doub 242 n y 
O2 C9 NVK doub 243 n n 
C13 C14 NVK doub 244 n y 
C13 N4 NVK sing 245 n y 
C14 C10 NVK sing 246 n y 
C2 C1 NVK sing 247 n n 
C2 O1 NVK sing 248 n y 
C6 N2 NVK sing 249 n n 
C6 C5 NVK doub 250 n y 
C9 N2 NVK sing 251 n n 
C9 N3 NVK sing 252 n n 
C4 O1 NVK sing 253 n y 
C4 C5 NVK sing 254 n y 
N4 C12 NVK doub 255 n y 
C10 N3 NVK sing 256 n n 
C10 C11 NVK doub 257 n y 
C12 C11 NVK sing 258 n y 
C12 C15 NVK sing 259 n y 
C11 N5 NVK sing 260 n y 
C15 C16 NVK doub 261 n y 
N5 C17 NVK doub 262 n y 
C16 C17 NVK sing 263 n y 
C1 H3 NVK sing 264 n n 
C1 H1 NVK sing 265 n n 
C1 H2 NVK sing 266 n n 
C13 H9 NVK sing 267 n n 
C14 H10 NVK sing 268 n n 
C15 H11 NVK sing 269 n n 
C16 H12 NVK sing 270 n n 
C17 H13 NVK sing 271 n n 
C5 H4 NVK sing 272 n n 
C7 H5 NVK sing 273 n n 
C8 H6 NVK sing 274 n n 
N2 H7 NVK sing 275 n n 
N3 H8 NVK sing 276 n n 
#
_atom_sites.entry_id                     6TQ7 
_atom_sites.fract_transf_matrix[1][1]    0.016732 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006819 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006746 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015067 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NVK A 1 401 401 NVK UNL . 
D 2 NVK A 1 402 501 NVK UNL . 
E 3 SO4 A 1 403 1 SO4 SO4 . 
F 4 SOG A 1 404 1 SOG SOG . 
G 4 SOG A 1 405 4 SOG SOG . 
H 4 SOG A 1 406 5 SOG SOG . 
I 4 SOG A 1 407 6 SOG SOG . 
J 4 SOG A 1 408 7 SOG SOG . 
K 4 SOG A 1 409 8 SOG SOG . 
L 4 SOG A 1 410 9 SOG SOG . 
M 5 PGW A 1 411 2 PGW PGW . 
N 2 NVK B 1 401 401 NVK UNL . 
O 2 NVK B 1 402 501 NVK UNL . 
P 3 SO4 B 1 403 2 SO4 SO4 . 
Q 3 SO4 B 1 404 3 SO4 SO4 . 
R 4 SOG B 1 405 2 SOG SOG . 
S 4 SOG B 1 406 3 SOG SOG . 
T 4 SOG B 1 407 10 SOG SOG . 
U 4 SOG B 1 408 11 SOG SOG . 
V 5 PGW B 1 409 1 PGW PGW . 
W 6 HOH A 1 501 19 HOH HOH . 
W 6 HOH A 2 502 18 HOH HOH . 
W 6 HOH A 3 503 3 HOH HOH . 
W 6 HOH A 4 504 1 HOH HOH . 
W 6 HOH A 5 505 17 HOH HOH . 
W 6 HOH A 6 506 4 HOH HOH . 
W 6 HOH A 7 507 9 HOH HOH . 
W 6 HOH A 8 508 2 HOH HOH . 
W 6 HOH A 9 509 11 HOH HOH . 
W 6 HOH A 10 510 14 HOH HOH . 
W 6 HOH A 11 511 10 HOH HOH . 
X 6 HOH B 1 501 8 HOH HOH . 
X 6 HOH B 2 502 12 HOH HOH . 
X 6 HOH B 3 503 5 HOH HOH . 
X 6 HOH B 4 504 15 HOH HOH . 
X 6 HOH B 5 505 6 HOH HOH . 
X 6 HOH B 6 506 7 HOH HOH . 
X 6 HOH B 7 507 13 HOH HOH . 
X 6 HOH B 8 508 16 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NVK . . . D 2 38.324 -38.362 -12.064 1 84.35 ? C1 NVK 402 A 1 
HETATM 2 C C10 NVK . . . D 2 39.684 -28.244 -15.679 1 79.44 ? C10 NVK 402 A 1 
HETATM 3 C C11 NVK . . . D 2 39.372 -26.942 -15.179 1 79.31 ? C11 NVK 402 A 1 
HETATM 4 C C12 NVK . . . D 2 39.601 -25.818 -16.001 1 85.32 ? C12 NVK 402 A 1 
HETATM 5 C C13 NVK . . . D 2 40.381 -27.169 -17.687 1 95.29 ? C13 NVK 402 A 1 
HETATM 6 C C14 NVK . . . D 2 40.189 -28.345 -16.946 1 86.77 ? C14 NVK 402 A 1 
HETATM 7 C C15 NVK . . . D 2 39.296 -24.533 -15.515 1 90.07 ? C15 NVK 402 A 1 
HETATM 8 C C16 NVK . . . D 2 38.79 -24.409 -14.266 1 91.59 ? C16 NVK 402 A 1 
HETATM 9 C C17 NVK . . . D 2 38.589 -25.57 -13.498 1 87.96 ? C17 NVK 402 A 1 
HETATM 10 C C2 NVK . . . D 2 38.646 -37.102 -12.761 1 84.02 ? C2 NVK 402 A 1 
HETATM 11 C C3 NVK . . . D 2 39.32 -35.621 -14.16 1 80.65 ? C3 NVK 402 A 1 
HETATM 12 C C4 NVK . . . D 2 38.76 -34.949 -13.094 1 81.17 ? C4 NVK 402 A 1 
HETATM 13 C C5 NVK . . . D 2 38.697 -33.579 -13.044 1 84.76 ? C5 NVK 402 A 1 
HETATM 14 C C6 NVK . . . D 2 39.221 -32.884 -14.124 1 88.15 ? C6 NVK 402 A 1 
HETATM 15 C C7 NVK . . . D 2 39.792 -33.548 -15.209 1 89.61 ? C7 NVK 402 A 1 
HETATM 16 C C8 NVK . . . D 2 39.846 -34.918 -15.235 1 86.01 ? C8 NVK 402 A 1 
HETATM 17 C C9 NVK . . . D 2 39.629 -30.652 -15.115 1 85.61 ? C9 NVK 402 A 1 
HETATM 18 N N1 NVK . . . D 2 39.23 -36.999 -13.907 1 80.9 ? N1 NVK 402 A 1 
HETATM 19 N N2 NVK . . . D 2 39.179 -31.482 -14.121 1 89.14 ? N2 NVK 402 A 1 
HETATM 20 N N3 NVK . . . D 2 39.435 -29.33 -14.836 1 82.58 ? N3 NVK 402 A 1 
HETATM 21 N N4 NVK . . . D 2 40.114 -25.948 -17.27 1 91.29 ? N4 NVK 402 A 1 
HETATM 22 N N5 NVK . . . D 2 38.859 -26.79 -13.917 1 83.16 ? N5 NVK 402 A 1 
HETATM 23 O O1 NVK . . . D 2 38.325 -35.902 -12.185 1 82.64 ? O1 NVK 402 A 1 
HETATM 24 O O2 NVK . . . D 2 40.15 -31.042 -16.152 1 84.06 ? O2 NVK 402 A 1 
HETATM 25 H H3 NVK . . . D 2 38.148 -39.056 -12.711 1 103.14 ? H3 NVK 402 A 1 
HETATM 26 H H1 NVK . . . D 2 37.544 -38.237 -11.51 1 103.14 ? H1 NVK 402 A 1 
HETATM 27 H H2 NVK . . . D 2 39.069 -38.625 -11.509 1 103.14 ? H2 NVK 402 A 1 
HETATM 28 H H9 NVK . . . D 2 40.734 -27.266 -18.563 1 116.28 ? H9 NVK 402 A 1 
HETATM 29 H H10 NVK . . . D 2 40.403 -29.196 -17.311 1 106.05 ? H10 NVK 402 A 1 
HETATM 30 H H11 NVK . . . D 2 39.446 -23.773 -16.059 1 110.01 ? H11 NVK 402 A 1 
HETATM 31 H H12 NVK . . . D 2 38.575 -23.562 -13.915 1 111.83 ? H12 NVK 402 A 1 
HETATM 32 H H13 NVK . . . D 2 38.239 -25.473 -12.628 1 107.48 ? H13 NVK 402 A 1 
HETATM 33 H H4 NVK . . . D 2 38.314 -33.124 -12.305 1 103.64 ? H4 NVK 402 A 1 
HETATM 34 H H5 NVK . . . D 2 40.144 -33.054 -15.932 1 109.46 ? H5 NVK 402 A 1 
HETATM 35 H H6 NVK . . . D 2 40.232 -35.371 -15.966 1 105.14 ? H6 NVK 402 A 1 
HETATM 36 H H7 NVK . . . D 2 38.829 -31.101 -13.411 1 108.89 ? H7 NVK 402 A 1 
HETATM 37 H H8 NVK . . . D 2 39.124 -29.121 -14.06 1 101.03 ? H8 NVK 402 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           218 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           37 
#