data_6TQ7
#
_model_server_result.job_id            jZ0ushGR7SY9Id071azzwQ 
_model_server_result.datetime_utc      '2024-11-04 22:44:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6tq7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":402}' 
#
_entry.id    6TQ7 
#
_exptl.entry_id    6TQ7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              319.317 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-(2-methyl-1,3-benzoxazol-6-yl)-3-(1,5-naphthyridin-4-yl)urea 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.17 
_cell.angle_gamma         90 
_cell.entry_id            6TQ7 
_cell.length_a            59.766 
_cell.length_b            148.243 
_cell.length_c            71.668 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6TQ7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,W 1 1 
B,N,O,P,Q,R,S,T,U,V,X 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 N N N 
? 2 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 95 A CYS 119 1_555 A SG CYS 178 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 B SG CYS 95 B CYS 119 1_555 B SG CYS 178 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
#
_chem_comp.formula           'C17 H13 N5 O2' 
_chem_comp.formula_weight    319.317 
_chem_comp.id                NVK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-(2-methyl-1,3-benzoxazol-6-yl)-3-(1,5-naphthyridin-4-yl)urea 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C8 C7 NVK doub 237 n y 
C8 C3 NVK sing 238 n y 
N1 C3 NVK sing 239 n y 
N1 C2 NVK doub 240 n y 
C7 C6 NVK sing 241 n y 
C3 C4 NVK doub 242 n y 
O2 C9 NVK doub 243 n n 
C13 C14 NVK doub 244 n y 
C13 N4 NVK sing 245 n y 
C14 C10 NVK sing 246 n y 
C2 C1 NVK sing 247 n n 
C2 O1 NVK sing 248 n y 
C6 N2 NVK sing 249 n n 
C6 C5 NVK doub 250 n y 
C9 N2 NVK sing 251 n n 
C9 N3 NVK sing 252 n n 
C4 O1 NVK sing 253 n y 
C4 C5 NVK sing 254 n y 
N4 C12 NVK doub 255 n y 
C10 N3 NVK sing 256 n n 
C10 C11 NVK doub 257 n y 
C12 C11 NVK sing 258 n y 
C12 C15 NVK sing 259 n y 
C11 N5 NVK sing 260 n y 
C15 C16 NVK doub 261 n y 
N5 C17 NVK doub 262 n y 
C16 C17 NVK sing 263 n y 
C1 H3 NVK sing 264 n n 
C1 H1 NVK sing 265 n n 
C1 H2 NVK sing 266 n n 
C13 H9 NVK sing 267 n n 
C14 H10 NVK sing 268 n n 
C15 H11 NVK sing 269 n n 
C16 H12 NVK sing 270 n n 
C17 H13 NVK sing 271 n n 
C5 H4 NVK sing 272 n n 
C7 H5 NVK sing 273 n n 
C8 H6 NVK sing 274 n n 
N2 H7 NVK sing 275 n n 
N3 H8 NVK sing 276 n n 
#
_atom_sites.entry_id                     6TQ7 
_atom_sites.fract_transf_matrix[1][1]    0.016732 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006819 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006746 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015067 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NVK A 1 401 401 NVK UNL . 
D 2 NVK A 1 402 501 NVK UNL . 
E 3 SO4 A 1 403 1 SO4 SO4 . 
F 4 SOG A 1 404 1 SOG SOG . 
G 4 SOG A 1 405 4 SOG SOG . 
H 4 SOG A 1 406 5 SOG SOG . 
I 4 SOG A 1 407 6 SOG SOG . 
J 4 SOG A 1 408 7 SOG SOG . 
K 4 SOG A 1 409 8 SOG SOG . 
L 4 SOG A 1 410 9 SOG SOG . 
M 5 PGW A 1 411 2 PGW PGW . 
N 2 NVK B 1 401 401 NVK UNL . 
O 2 NVK B 1 402 501 NVK UNL . 
P 3 SO4 B 1 403 2 SO4 SO4 . 
Q 3 SO4 B 1 404 3 SO4 SO4 . 
R 4 SOG B 1 405 2 SOG SOG . 
S 4 SOG B 1 406 3 SOG SOG . 
T 4 SOG B 1 407 10 SOG SOG . 
U 4 SOG B 1 408 11 SOG SOG . 
V 5 PGW B 1 409 1 PGW PGW . 
W 6 HOH A 1 501 19 HOH HOH . 
W 6 HOH A 2 502 18 HOH HOH . 
W 6 HOH A 3 503 3 HOH HOH . 
W 6 HOH A 4 504 1 HOH HOH . 
W 6 HOH A 5 505 17 HOH HOH . 
W 6 HOH A 6 506 4 HOH HOH . 
W 6 HOH A 7 507 9 HOH HOH . 
W 6 HOH A 8 508 2 HOH HOH . 
W 6 HOH A 9 509 11 HOH HOH . 
W 6 HOH A 10 510 14 HOH HOH . 
W 6 HOH A 11 511 10 HOH HOH . 
X 6 HOH B 1 501 8 HOH HOH . 
X 6 HOH B 2 502 12 HOH HOH . 
X 6 HOH B 3 503 5 HOH HOH . 
X 6 HOH B 4 504 15 HOH HOH . 
X 6 HOH B 5 505 6 HOH HOH . 
X 6 HOH B 6 506 7 HOH HOH . 
X 6 HOH B 7 507 13 HOH HOH . 
X 6 HOH B 8 508 16 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NVK . . . O 2 38.357 6.202 -31.664 1 104.28 ? C1 NVK 402 B 1 
HETATM 2 C C10 NVK . . . O 2 38.06 -4.304 -28.991 1 95.13 ? C10 NVK 402 B 1 
HETATM 3 C C11 NVK . . . O 2 37.083 -5.344 -29.038 1 99 ? C11 NVK 402 B 1 
HETATM 4 C C12 NVK . . . O 2 37.394 -6.598 -28.47 1 103.36 ? C12 NVK 402 B 1 
HETATM 5 C C13 NVK . . . O 2 39.476 -5.842 -27.853 1 111.91 ? C13 NVK 402 B 1 
HETATM 6 C C14 NVK . . . O 2 39.261 -4.564 -28.388 1 102.96 ? C14 NVK 402 B 1 
HETATM 7 C C15 NVK . . . O 2 36.439 -7.63 -28.509 1 103.45 ? C15 NVK 402 B 1 
HETATM 8 C C16 NVK . . . O 2 35.242 -7.391 -29.094 1 106.4 ? C16 NVK 402 B 1 
HETATM 9 C C17 NVK . . . O 2 34.999 -6.12 -29.645 1 109.4 ? C17 NVK 402 B 1 
HETATM 10 C C2 NVK . . . O 2 38.582 4.806 -31.235 1 89.12 ? C2 NVK 402 B 1 
HETATM 11 C C3 NVK . . . O 2 39.415 2.969 -30.495 1 86.66 ? C3 NVK 402 B 1 
HETATM 12 C C4 NVK . . . O 2 38.115 2.705 -30.869 1 84.8 ? C4 NVK 402 B 1 
HETATM 13 C C5 NVK . . . O 2 37.555 1.457 -30.747 1 81.95 ? C5 NVK 402 B 1 
HETATM 14 C C6 NVK . . . O 2 38.352 0.448 -30.223 1 83.95 ? C6 NVK 402 B 1 
HETATM 15 C C7 NVK . . . O 2 39.67 0.703 -29.84 1 87.39 ? C7 NVK 402 B 1 
HETATM 16 C C8 NVK . . . O 2 40.209 1.959 -29.973 1 88.28 ? C8 NVK 402 B 1 
HETATM 17 C C9 NVK . . . O 2 38.484 -1.944 -29.571 1 96.3 ? C9 NVK 402 B 1 
HETATM 18 N N1 NVK . . . O 2 39.678 4.326 -30.749 1 81.19 ? N1 NVK 402 B 1 
HETATM 19 N N2 NVK . . . O 2 37.828 -0.85 -30.078 1 86.43 ? N2 NVK 402 B 1 
HETATM 20 N N3 NVK . . . O 2 37.716 -3.071 -29.549 1 95.38 ? N3 NVK 402 B 1 
HETATM 21 N N4 NVK . . . O 2 38.611 -6.836 -27.875 1 109.66 ? N4 NVK 402 B 1 
HETATM 22 N N5 NVK . . . O 2 35.865 -5.128 -29.627 1 106.13 ? N5 NVK 402 B 1 
HETATM 23 O O1 NVK . . . O 2 37.573 3.886 -31.35 1 82.08 ? O1 NVK 402 B 1 
HETATM 24 O O2 NVK . . . O 2 39.643 -1.927 -29.18 1 104.38 ? O2 NVK 402 B 1 
HETATM 25 H H3 NVK . . . O 2 39.038 6.772 -31.287 1 127.06 ? H3 NVK 402 B 1 
HETATM 26 H H1 NVK . . . O 2 37.49 6.499 -31.362 1 127.06 ? H1 NVK 402 B 1 
HETATM 27 H H2 NVK . . . O 2 38.394 6.256 -32.627 1 127.06 ? H2 NVK 402 B 1 
HETATM 28 H H9 NVK . . . O 2 40.318 -6.001 -27.442 1 136.22 ? H9 NVK 402 B 1 
HETATM 29 H H10 NVK . . . O 2 39.929 -3.891 -28.336 1 125.48 ? H10 NVK 402 B 1 
HETATM 30 H H11 NVK . . . O 2 36.638 -8.474 -28.13 1 126.07 ? H11 NVK 402 B 1 
HETATM 31 H H12 NVK . . . O 2 34.582 -8.062 -29.133 1 129.61 ? H12 NVK 402 B 1 
HETATM 32 H H13 NVK . . . O 2 34.164 -5.965 -30.054 1 133.2 ? H13 NVK 402 B 1 
HETATM 33 H H4 NVK . . . O 2 36.66 1.288 -31.008 1 100.26 ? H4 NVK 402 B 1 
HETATM 34 H H5 NVK . . . O 2 40.198 0.006 -29.486 1 106.79 ? H5 NVK 402 B 1 
HETATM 35 H H6 NVK . . . O 2 41.1 2.13 -29.714 1 107.86 ? H6 NVK 402 B 1 
HETATM 36 H H7 NVK . . . O 2 36.997 -0.97 -30.339 1 105.64 ? H7 NVK 402 B 1 
HETATM 37 H H8 NVK . . . O 2 36.935 -3.04 -29.912 1 116.38 ? H8 NVK 402 B 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          25 
_model_server_stats.element_count           37 
#