data_6TQ7 # _model_server_result.job_id AkZ1ob24hYzfG-1WVHRFDQ _model_server_result.datetime_utc '2024-11-04 22:43:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tq7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":408}' # _entry.id 6TQ7 # _exptl.entry_id 6TQ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 308.434 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl 1-thio-beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.17 _cell.angle_gamma 90 _cell.entry_id 6TQ7 _cell.length_a 59.766 _cell.length_b 148.243 _cell.length_c 71.668 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TQ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,W 1 1 B,N,O,P,Q,R,S,T,U,V,X 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 R N N ? 4 S N N ? 4 T N N ? 4 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 95 A CYS 119 1_555 A SG CYS 178 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 95 B CYS 119 1_555 B SG CYS 178 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C14 H28 O5 S' _chem_comp.formula_weight 308.434 _chem_comp.id SOG _chem_comp.mon_nstd_flag . _chem_comp.name 'octyl 1-thio-beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms '2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4,5-TRIOL;1-S-OCTYL-BETA-D-THIOGLUCOSIDE;octyl 1-thio-beta-D-glucoside;octyl 1-thio-D-glucoside;octyl 1-thio-glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 SOG sing 461 n n C1 S1 SOG sing 462 n n C1 O5 SOG sing 463 n n C1 H1 SOG sing 464 n n C2 C3 SOG sing 465 n n C2 O2 SOG sing 466 n n C2 H2 SOG sing 467 n n C3 C4 SOG sing 468 n n C3 O3 SOG sing 469 n n C3 H3 SOG sing 470 n n C4 C5 SOG sing 471 n n C4 O4 SOG sing 472 n n C4 H4 SOG sing 473 n n C5 C6 SOG sing 474 n n C5 O5 SOG sing 475 n n C5 H5 SOG sing 476 n n C6 O6 SOG sing 477 n n C6 H61 SOG sing 478 n n C6 H62 SOG sing 479 n n C1' C2' SOG sing 480 n n C1' S1 SOG sing 481 n n C1' "H1'1" SOG sing 482 n n C1' "H1'2" SOG sing 483 n n C2' C3' SOG sing 484 n n C2' "H2'1" SOG sing 485 n n C2' "H2'2" SOG sing 486 n n C3' C4' SOG sing 487 n n C3' "H3'1" SOG sing 488 n n C3' "H3'2" SOG sing 489 n n C4' C5' SOG sing 490 n n C4' "H4'1" SOG sing 491 n n C4' "H4'2" SOG sing 492 n n C5' C6' SOG sing 493 n n C5' "H5'1" SOG sing 494 n n C5' "H5'2" SOG sing 495 n n C6' C7' SOG sing 496 n n C6' "H6'1" SOG sing 497 n n C6' "H6'2" SOG sing 498 n n C7' C8' SOG sing 499 n n C7' "H7'1" SOG sing 500 n n C7' "H7'2" SOG sing 501 n n C8' "H8'1" SOG sing 502 n n C8' "H8'2" SOG sing 503 n n C8' "H8'3" SOG sing 504 n n O2 HO2 SOG sing 505 n n O3 HO3 SOG sing 506 n n O4 HO4 SOG sing 507 n n O6 HO6 SOG sing 508 n n # _atom_sites.entry_id 6TQ7 _atom_sites.fract_transf_matrix[1][1] 0.016732 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006819 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006746 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015067 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NVK A 1 401 401 NVK UNL . D 2 NVK A 1 402 501 NVK UNL . E 3 SO4 A 1 403 1 SO4 SO4 . F 4 SOG A 1 404 1 SOG SOG . G 4 SOG A 1 405 4 SOG SOG . H 4 SOG A 1 406 5 SOG SOG . I 4 SOG A 1 407 6 SOG SOG . J 4 SOG A 1 408 7 SOG SOG . K 4 SOG A 1 409 8 SOG SOG . L 4 SOG A 1 410 9 SOG SOG . M 5 PGW A 1 411 2 PGW PGW . N 2 NVK B 1 401 401 NVK UNL . O 2 NVK B 1 402 501 NVK UNL . P 3 SO4 B 1 403 2 SO4 SO4 . Q 3 SO4 B 1 404 3 SO4 SO4 . R 4 SOG B 1 405 2 SOG SOG . S 4 SOG B 1 406 3 SOG SOG . T 4 SOG B 1 407 10 SOG SOG . U 4 SOG B 1 408 11 SOG SOG . V 5 PGW B 1 409 1 PGW PGW . W 6 HOH A 1 501 19 HOH HOH . W 6 HOH A 2 502 18 HOH HOH . W 6 HOH A 3 503 3 HOH HOH . W 6 HOH A 4 504 1 HOH HOH . W 6 HOH A 5 505 17 HOH HOH . W 6 HOH A 6 506 4 HOH HOH . W 6 HOH A 7 507 9 HOH HOH . W 6 HOH A 8 508 2 HOH HOH . W 6 HOH A 9 509 11 HOH HOH . W 6 HOH A 10 510 14 HOH HOH . W 6 HOH A 11 511 10 HOH HOH . X 6 HOH B 1 501 8 HOH HOH . X 6 HOH B 2 502 12 HOH HOH . X 6 HOH B 3 503 5 HOH HOH . X 6 HOH B 4 504 15 HOH HOH . X 6 HOH B 5 505 6 HOH HOH . X 6 HOH B 6 506 7 HOH HOH . X 6 HOH B 7 507 13 HOH HOH . X 6 HOH B 8 508 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SOG . . . U 4 38.311 21.824 -54.011 1 133.27 ? C1 SOG 408 B 1 HETATM 2 C C2 SOG . . . U 4 38.474 20.462 -54.653 1 129.36 ? C2 SOG 408 B 1 HETATM 3 C C3 SOG . . . U 4 39.689 20.492 -55.575 1 128.49 ? C3 SOG 408 B 1 HETATM 4 C C4 SOG . . . U 4 39.632 21.659 -56.551 1 129.2 ? C4 SOG 408 B 1 HETATM 5 C C5 SOG . . . U 4 39.219 22.972 -55.871 1 130.81 ? C5 SOG 408 B 1 HETATM 6 C C6 SOG . . . U 4 38.855 24.055 -56.871 1 127.23 ? C6 SOG 408 B 1 HETATM 7 C C1' SOG . . . U 4 37.404 23.384 -51.906 1 130.68 ? C1' SOG 408 B 1 HETATM 8 C C2' SOG . . . U 4 36.3 24.404 -51.786 1 126.25 ? C2' SOG 408 B 1 HETATM 9 C C3' SOG . . . U 4 35.338 24.102 -50.664 1 121.26 ? C3' SOG 408 B 1 HETATM 10 C C4' SOG . . . U 4 33.896 24.188 -51.089 1 117.44 ? C4' SOG 408 B 1 HETATM 11 C C5' SOG . . . U 4 32.912 24.055 -49.956 1 111.98 ? C5' SOG 408 B 1 HETATM 12 C C6' SOG . . . U 4 31.479 23.905 -50.398 1 102.83 ? C6' SOG 408 B 1 HETATM 13 C C7' SOG . . . U 4 30.501 23.808 -49.258 1 91.57 ? C7' SOG 408 B 1 HETATM 14 C C8' SOG . . . U 4 29.088 23.536 -49.713 1 85.44 ? C8' SOG 408 B 1 HETATM 15 S S1 SOG . . . U 4 36.955 21.864 -52.813 1 132.98 ? S1 SOG 408 B 1 HETATM 16 O O2 SOG . . . U 4 38.671 19.475 -53.647 1 126.81 ? O2 SOG 408 B 1 HETATM 17 O O3 SOG . . . U 4 39.804 19.261 -56.288 1 126.73 ? O3 SOG 408 B 1 HETATM 18 O O4 SOG . . . U 4 40.897 21.835 -57.192 1 127.32 ? O4 SOG 408 B 1 HETATM 19 O O5 SOG . . . U 4 38.068 22.78 -55.031 1 135.89 ? O5 SOG 408 B 1 HETATM 20 O O6 SOG . . . U 4 38.269 25.18 -56.22 1 125.57 ? O6 SOG 408 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 20 #