data_6TQ7
#
_model_server_result.job_id            ZMbgeKI7gOH94HGkr9B5bA 
_model_server_result.datetime_utc      '2024-11-04 22:41:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6tq7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":409}' 
#
_entry.id    6TQ7 
#
_exptl.entry_id    6TQ7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              749.007 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.17 
_cell.angle_gamma         90 
_cell.entry_id            6TQ7 
_cell.length_a            59.766 
_cell.length_b            148.243 
_cell.length_c            71.668 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6TQ7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,W 1 1 
B,N,O,P,Q,R,S,T,U,V,X 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 M N N 
? 5 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 95 A CYS 119 1_555 A SG CYS 178 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 B SG CYS 95 B CYS 119 1_555 B SG CYS 178 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
#
_chem_comp.formula           'C40 H77 O10 P' 
_chem_comp.formula_weight    749.007 
_chem_comp.id                PGW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Palmitoyl-2-Oleoyl-sn-Glycero-3-[Phospho-(1-glycerol)];PHOSPHATIDYLGLYCEROL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAD C05 PGW sing 277 n n 
CAD HAD PGW sing 278 n n 
CAD HADA PGW sing 279 n n 
OAE CAD PGW sing 280 n n 
OAE HOAE PGW sing 281 n n 
OAF C05 PGW sing 282 n n 
OAF HOAF PGW sing 283 n n 
P O13 PGW sing 284 n n 
P O11 PGW sing 285 n n 
C01 O03 PGW sing 286 n n 
C01 C02 PGW sing 287 n n 
C01 H01 PGW sing 288 n n 
C01 H01A PGW sing 289 n n 
C1 C2 PGW sing 290 n n 
O01 C1 PGW sing 291 n n 
C02 O01 PGW sing 292 n n 
C02 H02 PGW sing 293 n n 
C2 C3 PGW sing 294 n n 
C2 H2 PGW sing 295 n n 
C2 H2A PGW sing 296 n n 
O02 C1 PGW doub 297 n n 
C03 C02 PGW sing 298 n n 
C03 H03 PGW sing 299 n n 
C03 H03A PGW sing 300 n n 
C3 C4 PGW sing 301 n n 
C3 H3 PGW sing 302 n n 
C3 H3A PGW sing 303 n n 
C04 C05 PGW sing 304 n n 
C04 O12 PGW sing 305 n n 
C04 H04 PGW sing 306 n n 
C04 H04A PGW sing 307 n n 
C4 C5 PGW sing 308 n n 
C4 H4 PGW sing 309 n n 
C4 H4A PGW sing 310 n n 
O04 C19 PGW doub 311 n n 
C05 H05 PGW sing 312 n n 
C5 C6 PGW sing 313 n n 
C5 H5 PGW sing 314 n n 
C5 H5A PGW sing 315 n n 
C06 C07 PGW sing 316 n n 
C06 H06 PGW sing 317 n n 
C06 H06A PGW sing 318 n n 
C6 C7 PGW sing 319 n n 
C6 H6 PGW sing 320 n n 
C6 H6A PGW sing 321 n n 
C07 H07 PGW sing 322 n n 
C07 H07A PGW sing 323 n n 
C7 C8 PGW sing 324 n n 
C7 H7 PGW sing 325 n n 
C7 H7A PGW sing 326 n n 
C08 C07 PGW sing 327 n n 
C08 H08 PGW sing 328 n n 
C08 H08A PGW sing 329 n n 
C8 C9 PGW sing 330 n n 
C8 H8 PGW sing 331 n n 
C8 H8A PGW sing 332 n n 
C09 C08 PGW sing 333 n n 
C09 C11 PGW sing 334 n n 
C09 H09 PGW sing 335 n n 
C09 H09A PGW sing 336 n n 
C9 C10 PGW doub 337 z n 
C10 C06 PGW sing 338 n n 
C11 H11 PGW sing 339 n n 
C11 H11A PGW sing 340 n n 
O11 C03 PGW sing 341 n n 
C12 C11 PGW sing 342 n n 
C12 H12 PGW sing 343 n n 
C12 H12A PGW sing 344 n n 
O12 P PGW sing 345 n n 
C13 C12 PGW sing 346 n n 
C13 C14 PGW sing 347 n n 
C13 H13 PGW sing 348 n n 
C13 H13A PGW sing 349 n n 
O13 HO13 PGW sing 350 n n 
C14 H14 PGW sing 351 n n 
C14 H14A PGW sing 352 n n 
C14 H14B PGW sing 353 n n 
O14 P PGW doub 354 n n 
C15 C16 PGW sing 355 n n 
C15 H15 PGW sing 356 n n 
C15 H15A PGW sing 357 n n 
C16 H16 PGW sing 358 n n 
C16 H16A PGW sing 359 n n 
C17 C16 PGW sing 360 n n 
C17 C18 PGW sing 361 n n 
C17 H17 PGW sing 362 n n 
C17 H17A PGW sing 363 n n 
C18 C28 PGW sing 364 n n 
C18 H18 PGW sing 365 n n 
C18 H18A PGW sing 366 n n 
C19 O03 PGW sing 367 n n 
C19 C20 PGW sing 368 n n 
C20 C21 PGW sing 369 n n 
C20 H20 PGW sing 370 n n 
C20 H20A PGW sing 371 n n 
C21 C22 PGW sing 372 n n 
C21 H21 PGW sing 373 n n 
C21 H21A PGW sing 374 n n 
C22 C23 PGW sing 375 n n 
C22 H22 PGW sing 376 n n 
C22 H22A PGW sing 377 n n 
C23 C24 PGW sing 378 n n 
C23 H23 PGW sing 379 n n 
C23 H23A PGW sing 380 n n 
C24 C25 PGW sing 381 n n 
C24 H24 PGW sing 382 n n 
C24 H24A PGW sing 383 n n 
C25 C26 PGW sing 384 n n 
C25 H25 PGW sing 385 n n 
C25 H25A PGW sing 386 n n 
C26 C27 PGW sing 387 n n 
C26 H26 PGW sing 388 n n 
C26 H26A PGW sing 389 n n 
C27 C15 PGW sing 390 n n 
C27 H27 PGW sing 391 n n 
C27 H27A PGW sing 392 n n 
C28 H28 PGW sing 393 n n 
C28 H28A PGW sing 394 n n 
C29 H29 PGW sing 395 n n 
C29 H29A PGW sing 396 n n 
C29 H29B PGW sing 397 n n 
C30 C28 PGW sing 398 n n 
C30 C29 PGW sing 399 n n 
C30 H30 PGW sing 400 n n 
C30 H30A PGW sing 401 n n 
C9 H9 PGW sing 402 n n 
C10 H10 PGW sing 403 n n 
#
_atom_sites.entry_id                     6TQ7 
_atom_sites.fract_transf_matrix[1][1]    0.016732 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006819 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006746 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015067 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NVK A 1 401 401 NVK UNL . 
D 2 NVK A 1 402 501 NVK UNL . 
E 3 SO4 A 1 403 1 SO4 SO4 . 
F 4 SOG A 1 404 1 SOG SOG . 
G 4 SOG A 1 405 4 SOG SOG . 
H 4 SOG A 1 406 5 SOG SOG . 
I 4 SOG A 1 407 6 SOG SOG . 
J 4 SOG A 1 408 7 SOG SOG . 
K 4 SOG A 1 409 8 SOG SOG . 
L 4 SOG A 1 410 9 SOG SOG . 
M 5 PGW A 1 411 2 PGW PGW . 
N 2 NVK B 1 401 401 NVK UNL . 
O 2 NVK B 1 402 501 NVK UNL . 
P 3 SO4 B 1 403 2 SO4 SO4 . 
Q 3 SO4 B 1 404 3 SO4 SO4 . 
R 4 SOG B 1 405 2 SOG SOG . 
S 4 SOG B 1 406 3 SOG SOG . 
T 4 SOG B 1 407 10 SOG SOG . 
U 4 SOG B 1 408 11 SOG SOG . 
V 5 PGW B 1 409 1 PGW PGW . 
W 6 HOH A 1 501 19 HOH HOH . 
W 6 HOH A 2 502 18 HOH HOH . 
W 6 HOH A 3 503 3 HOH HOH . 
W 6 HOH A 4 504 1 HOH HOH . 
W 6 HOH A 5 505 17 HOH HOH . 
W 6 HOH A 6 506 4 HOH HOH . 
W 6 HOH A 7 507 9 HOH HOH . 
W 6 HOH A 8 508 2 HOH HOH . 
W 6 HOH A 9 509 11 HOH HOH . 
W 6 HOH A 10 510 14 HOH HOH . 
W 6 HOH A 11 511 10 HOH HOH . 
X 6 HOH B 1 501 8 HOH HOH . 
X 6 HOH B 2 502 12 HOH HOH . 
X 6 HOH B 3 503 5 HOH HOH . 
X 6 HOH B 4 504 15 HOH HOH . 
X 6 HOH B 5 505 6 HOH HOH . 
X 6 HOH B 6 506 7 HOH HOH . 
X 6 HOH B 7 507 13 HOH HOH . 
X 6 HOH B 8 508 16 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAD PGW . . . V 5 26.495 -35.872 -29.006 1 111.68 ? CAD PGW 409 B 1 
HETATM 2 O OAE PGW . . . V 5 27.561 -36.803 -28.843 1 106.38 ? OAE PGW 409 B 1 
HETATM 3 O OAF PGW . . . V 5 26.274 -33.474 -29.185 1 108.12 ? OAF PGW 409 B 1 
HETATM 4 P P PGW . . . V 5 27.161 -32.991 -33.248 1 146.02 ? P PGW 409 B 1 
HETATM 5 C C01 PGW . . . V 5 28.215 -30.267 -30.235 1 104.99 ? C01 PGW 409 B 1 
HETATM 6 C C1 PGW . . . V 5 30.547 -29.573 -32.927 1 108.26 ? C1 PGW 409 B 1 
HETATM 7 O O01 PGW . . . V 5 30.076 -29.859 -31.705 1 110.02 ? O01 PGW 409 B 1 
HETATM 8 C C02 PGW . . . V 5 28.781 -30.504 -31.615 1 114.01 ? C02 PGW 409 B 1 
HETATM 9 C C2 PGW . . . V 5 31.993 -29.942 -33.116 1 107.51 ? C2 PGW 409 B 1 
HETATM 10 O O02 PGW . . . V 5 29.856 -29.045 -33.759 1 106.06 ? O02 PGW 409 B 1 
HETATM 11 C C03 PGW . . . V 5 29.13 -31.958 -31.83 1 128.04 ? C03 PGW 409 B 1 
HETATM 12 C C3 PGW . . . V 5 32.481 -30.957 -32.129 1 102.19 ? C3 PGW 409 B 1 
HETATM 13 O O03 PGW . . . V 5 28.569 -28.946 -29.772 1 96.14 ? O03 PGW 409 B 1 
HETATM 14 C C04 PGW . . . V 5 26.765 -34.651 -31.218 1 130.27 ? C04 PGW 409 B 1 
HETATM 15 C C4 PGW . . . V 5 33.823 -30.579 -31.535 1 98.34 ? C4 PGW 409 B 1 
HETATM 16 O O04 PGW . . . V 5 26.628 -28.068 -30.427 1 79.94 ? O04 PGW 409 B 1 
HETATM 17 C C05 PGW . . . V 5 26.952 -34.612 -29.716 1 116.78 ? C05 PGW 409 B 1 
HETATM 18 C C5 PGW . . . V 5 33.785 -29.314 -30.71 1 95.9 ? C5 PGW 409 B 1 
HETATM 19 C C06 PGW . . . V 5 37.202 -23.95 -30.185 1 78.52 ? C06 PGW 409 B 1 
HETATM 20 C C6 PGW . . . V 5 35.128 -28.852 -30.2 1 90.85 ? C6 PGW 409 B 1 
HETATM 21 C C07 PGW . . . V 5 37.119 -22.567 -30.755 1 71.57 ? C07 PGW 409 B 1 
HETATM 22 C C7 PGW . . . V 5 35.988 -28.106 -31.212 1 82.87 ? C7 PGW 409 B 1 
HETATM 23 C C08 PGW . . . V 5 36.133 -21.651 -30.047 1 58.27 ? C08 PGW 409 B 1 
HETATM 24 C C8 PGW . . . V 5 36.221 -26.669 -30.85 1 73.84 ? C8 PGW 409 B 1 
HETATM 25 C C09 PGW . . . V 5 36.161 -21.755 -28.541 1 53.67 ? C09 PGW 409 B 1 
HETATM 26 C C9 PGW . . . V 5 37.476 -26.082 -31.419 1 69.48 ? C9 PGW 409 B 1 
HETATM 27 C C10 PGW . . . V 5 37.94 -24.911 -31.065 1 72.26 ? C10 PGW 409 B 1 
HETATM 28 C C11 PGW . . . V 5 34.984 -22.497 -27.952 1 60.91 ? C11 PGW 409 B 1 
HETATM 29 O O11 PGW . . . V 5 28.683 -32.502 -33.1 1 139.28 ? O11 PGW 409 B 1 
HETATM 30 C C12 PGW . . . V 5 35.255 -23.138 -26.611 1 70.35 ? C12 PGW 409 B 1 
HETATM 31 O O12 PGW . . . V 5 26.742 -33.284 -31.725 1 141.91 ? O12 PGW 409 B 1 
HETATM 32 C C13 PGW . . . V 5 35.623 -22.22 -25.472 1 75.05 ? C13 PGW 409 B 1 
HETATM 33 O O13 PGW . . . V 5 26.364 -31.816 -33.743 1 143.32 ? O13 PGW 409 B 1 
HETATM 34 C C14 PGW . . . V 5 34.481 -21.38 -24.955 1 78.49 ? C14 PGW 409 B 1 
HETATM 35 O O14 PGW . . . V 5 27.164 -34.294 -33.999 1 149.31 ? O14 PGW 409 B 1 
HETATM 36 C C15 PGW . . . V 5 26.694 -18.571 -25.329 1 63.41 ? C15 PGW 409 B 1 
HETATM 37 C C16 PGW . . . V 5 27.47 -18.856 -24.066 1 62.92 ? C16 PGW 409 B 1 
HETATM 38 C C17 PGW . . . V 5 27.429 -17.746 -23.045 1 63.06 ? C17 PGW 409 B 1 
HETATM 39 C C18 PGW . . . V 5 28.74 -17.018 -22.868 1 59.06 ? C18 PGW 409 B 1 
HETATM 40 C C19 PGW . . . V 5 27.58 -28.062 -29.689 1 79.53 ? C19 PGW 409 B 1 
HETATM 41 C C20 PGW . . . V 5 27.788 -27.131 -28.526 1 61.11 ? C20 PGW 409 B 1 
HETATM 42 C C21 PGW . . . V 5 26.602 -26.276 -28.202 1 43.13 ? C21 PGW 409 B 1 
HETATM 43 C C22 PGW . . . V 5 27.01 -24.871 -27.799 1 34.81 ? C22 PGW 409 B 1 
HETATM 44 C C23 PGW . . . V 5 25.884 -23.977 -27.34 1 32.41 ? C23 PGW 409 B 1 
HETATM 45 C C24 PGW . . . V 5 26.256 -22.515 -27.257 1 38.13 ? C24 PGW 409 B 1 
HETATM 46 C C25 PGW . . . V 5 25.169 -21.618 -26.716 1 45.62 ? C25 PGW 409 B 1 
HETATM 47 C C26 PGW . . . V 5 25.432 -20.137 -26.879 1 55.09 ? C26 PGW 409 B 1 
HETATM 48 C C27 PGW . . . V 5 26.771 -19.677 -26.352 1 59.02 ? C27 PGW 409 B 1 
HETATM 49 C C28 PGW . . . V 5 29.866 -17.892 -22.359 1 57.29 ? C28 PGW 409 B 1 
HETATM 50 C C29 PGW . . . V 5 31.221 -16.081 -21.186 1 57.34 ? C29 PGW 409 B 1 
HETATM 51 C C30 PGW . . . V 5 31.206 -17.218 -22.182 1 55.44 ? C30 PGW 409 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           243 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           51 
#