data_6TQ7
#
_model_server_result.job_id            hSYo-0kMWwhcCD6oJg1Jxw 
_model_server_result.datetime_utc      '2024-11-25 02:06:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6tq7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":411}' 
#
_entry.id    6TQ7 
#
_exptl.entry_id    6TQ7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              749.007 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.17 
_cell.angle_gamma         90 
_cell.entry_id            6TQ7 
_cell.length_a            59.766 
_cell.length_b            148.243 
_cell.length_c            71.668 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6TQ7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,W 1 1 
B,N,O,P,Q,R,S,T,U,V,X 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 M N N 
? 5 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 95 A CYS 119 1_555 A SG CYS 178 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 B SG CYS 95 B CYS 119 1_555 B SG CYS 178 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
#
_chem_comp.formula           'C40 H77 O10 P' 
_chem_comp.formula_weight    749.007 
_chem_comp.id                PGW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Palmitoyl-2-Oleoyl-sn-Glycero-3-[Phospho-(1-glycerol)];PHOSPHATIDYLGLYCEROL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAD C05 PGW sing 277 n n 
CAD HAD PGW sing 278 n n 
CAD HADA PGW sing 279 n n 
OAE CAD PGW sing 280 n n 
OAE HOAE PGW sing 281 n n 
OAF C05 PGW sing 282 n n 
OAF HOAF PGW sing 283 n n 
P O13 PGW sing 284 n n 
P O11 PGW sing 285 n n 
C01 O03 PGW sing 286 n n 
C01 C02 PGW sing 287 n n 
C01 H01 PGW sing 288 n n 
C01 H01A PGW sing 289 n n 
C1 C2 PGW sing 290 n n 
O01 C1 PGW sing 291 n n 
C02 O01 PGW sing 292 n n 
C02 H02 PGW sing 293 n n 
C2 C3 PGW sing 294 n n 
C2 H2 PGW sing 295 n n 
C2 H2A PGW sing 296 n n 
O02 C1 PGW doub 297 n n 
C03 C02 PGW sing 298 n n 
C03 H03 PGW sing 299 n n 
C03 H03A PGW sing 300 n n 
C3 C4 PGW sing 301 n n 
C3 H3 PGW sing 302 n n 
C3 H3A PGW sing 303 n n 
C04 C05 PGW sing 304 n n 
C04 O12 PGW sing 305 n n 
C04 H04 PGW sing 306 n n 
C04 H04A PGW sing 307 n n 
C4 C5 PGW sing 308 n n 
C4 H4 PGW sing 309 n n 
C4 H4A PGW sing 310 n n 
O04 C19 PGW doub 311 n n 
C05 H05 PGW sing 312 n n 
C5 C6 PGW sing 313 n n 
C5 H5 PGW sing 314 n n 
C5 H5A PGW sing 315 n n 
C06 C07 PGW sing 316 n n 
C06 H06 PGW sing 317 n n 
C06 H06A PGW sing 318 n n 
C6 C7 PGW sing 319 n n 
C6 H6 PGW sing 320 n n 
C6 H6A PGW sing 321 n n 
C07 H07 PGW sing 322 n n 
C07 H07A PGW sing 323 n n 
C7 C8 PGW sing 324 n n 
C7 H7 PGW sing 325 n n 
C7 H7A PGW sing 326 n n 
C08 C07 PGW sing 327 n n 
C08 H08 PGW sing 328 n n 
C08 H08A PGW sing 329 n n 
C8 C9 PGW sing 330 n n 
C8 H8 PGW sing 331 n n 
C8 H8A PGW sing 332 n n 
C09 C08 PGW sing 333 n n 
C09 C11 PGW sing 334 n n 
C09 H09 PGW sing 335 n n 
C09 H09A PGW sing 336 n n 
C9 C10 PGW doub 337 z n 
C10 C06 PGW sing 338 n n 
C11 H11 PGW sing 339 n n 
C11 H11A PGW sing 340 n n 
O11 C03 PGW sing 341 n n 
C12 C11 PGW sing 342 n n 
C12 H12 PGW sing 343 n n 
C12 H12A PGW sing 344 n n 
O12 P PGW sing 345 n n 
C13 C12 PGW sing 346 n n 
C13 C14 PGW sing 347 n n 
C13 H13 PGW sing 348 n n 
C13 H13A PGW sing 349 n n 
O13 HO13 PGW sing 350 n n 
C14 H14 PGW sing 351 n n 
C14 H14A PGW sing 352 n n 
C14 H14B PGW sing 353 n n 
O14 P PGW doub 354 n n 
C15 C16 PGW sing 355 n n 
C15 H15 PGW sing 356 n n 
C15 H15A PGW sing 357 n n 
C16 H16 PGW sing 358 n n 
C16 H16A PGW sing 359 n n 
C17 C16 PGW sing 360 n n 
C17 C18 PGW sing 361 n n 
C17 H17 PGW sing 362 n n 
C17 H17A PGW sing 363 n n 
C18 C28 PGW sing 364 n n 
C18 H18 PGW sing 365 n n 
C18 H18A PGW sing 366 n n 
C19 O03 PGW sing 367 n n 
C19 C20 PGW sing 368 n n 
C20 C21 PGW sing 369 n n 
C20 H20 PGW sing 370 n n 
C20 H20A PGW sing 371 n n 
C21 C22 PGW sing 372 n n 
C21 H21 PGW sing 373 n n 
C21 H21A PGW sing 374 n n 
C22 C23 PGW sing 375 n n 
C22 H22 PGW sing 376 n n 
C22 H22A PGW sing 377 n n 
C23 C24 PGW sing 378 n n 
C23 H23 PGW sing 379 n n 
C23 H23A PGW sing 380 n n 
C24 C25 PGW sing 381 n n 
C24 H24 PGW sing 382 n n 
C24 H24A PGW sing 383 n n 
C25 C26 PGW sing 384 n n 
C25 H25 PGW sing 385 n n 
C25 H25A PGW sing 386 n n 
C26 C27 PGW sing 387 n n 
C26 H26 PGW sing 388 n n 
C26 H26A PGW sing 389 n n 
C27 C15 PGW sing 390 n n 
C27 H27 PGW sing 391 n n 
C27 H27A PGW sing 392 n n 
C28 H28 PGW sing 393 n n 
C28 H28A PGW sing 394 n n 
C29 H29 PGW sing 395 n n 
C29 H29A PGW sing 396 n n 
C29 H29B PGW sing 397 n n 
C30 C28 PGW sing 398 n n 
C30 C29 PGW sing 399 n n 
C30 H30 PGW sing 400 n n 
C30 H30A PGW sing 401 n n 
C9 H9 PGW sing 402 n n 
C10 H10 PGW sing 403 n n 
#
_atom_sites.entry_id                     6TQ7 
_atom_sites.fract_transf_matrix[1][1]    0.016732 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006819 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006746 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015067 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NVK A 1 401 401 NVK UNL . 
D 2 NVK A 1 402 501 NVK UNL . 
E 3 SO4 A 1 403 1 SO4 SO4 . 
F 4 SOG A 1 404 1 SOG SOG . 
G 4 SOG A 1 405 4 SOG SOG . 
H 4 SOG A 1 406 5 SOG SOG . 
I 4 SOG A 1 407 6 SOG SOG . 
J 4 SOG A 1 408 7 SOG SOG . 
K 4 SOG A 1 409 8 SOG SOG . 
L 4 SOG A 1 410 9 SOG SOG . 
M 5 PGW A 1 411 2 PGW PGW . 
N 2 NVK B 1 401 401 NVK UNL . 
O 2 NVK B 1 402 501 NVK UNL . 
P 3 SO4 B 1 403 2 SO4 SO4 . 
Q 3 SO4 B 1 404 3 SO4 SO4 . 
R 4 SOG B 1 405 2 SOG SOG . 
S 4 SOG B 1 406 3 SOG SOG . 
T 4 SOG B 1 407 10 SOG SOG . 
U 4 SOG B 1 408 11 SOG SOG . 
V 5 PGW B 1 409 1 PGW PGW . 
W 6 HOH A 1 501 19 HOH HOH . 
W 6 HOH A 2 502 18 HOH HOH . 
W 6 HOH A 3 503 3 HOH HOH . 
W 6 HOH A 4 504 1 HOH HOH . 
W 6 HOH A 5 505 17 HOH HOH . 
W 6 HOH A 6 506 4 HOH HOH . 
W 6 HOH A 7 507 9 HOH HOH . 
W 6 HOH A 8 508 2 HOH HOH . 
W 6 HOH A 9 509 11 HOH HOH . 
W 6 HOH A 10 510 14 HOH HOH . 
W 6 HOH A 11 511 10 HOH HOH . 
X 6 HOH B 1 501 8 HOH HOH . 
X 6 HOH B 2 502 12 HOH HOH . 
X 6 HOH B 3 503 5 HOH HOH . 
X 6 HOH B 4 504 15 HOH HOH . 
X 6 HOH B 5 505 6 HOH HOH . 
X 6 HOH B 6 506 7 HOH HOH . 
X 6 HOH B 7 507 13 HOH HOH . 
X 6 HOH B 8 508 16 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAD PGW . . . M 5 38.318 4.168 -10.628 1 101.57 ? CAD PGW 411 A 1 
HETATM 2 O OAE PGW . . . M 5 39.298 5.05 -11.17 1 103.51 ? OAE PGW 411 A 1 
HETATM 3 O OAF PGW . . . M 5 37.82 1.865 -10.118 1 91.81 ? OAF PGW 411 A 1 
HETATM 4 P P PGW . . . M 5 41.712 1.093 -8.241 1 115.24 ? P PGW 411 A 1 
HETATM 5 C C01 PGW . . . M 5 41.826 -1.073 -11.419 1 83.79 ? C01 PGW 411 A 1 
HETATM 6 C C1 PGW . . . M 5 38.96 -2.714 -10.483 1 85.19 ? C1 PGW 411 A 1 
HETATM 7 O O01 PGW . . . M 5 40.3 -2.703 -10.502 1 86.87 ? O01 PGW 411 A 1 
HETATM 8 C C02 PGW . . . M 5 40.951 -1.431 -10.241 1 88.44 ? C02 PGW 411 A 1 
HETATM 9 C C2 PGW . . . M 5 38.348 -4.021 -10.909 1 74.75 ? C2 PGW 411 A 1 
HETATM 10 O O02 PGW . . . M 5 38.341 -1.735 -10.16 1 91.62 ? O02 PGW 411 A 1 
HETATM 11 C C03 PGW . . . M 5 41.711 -1.471 -8.936 1 100.31 ? C03 PGW 411 A 1 
HETATM 12 C C3 PGW . . . M 5 37.14 -4.414 -10.115 1 70.4 ? C3 PGW 411 A 1 
HETATM 13 O O03 PGW . . . M 5 42.915 -2.015 -11.513 1 85.87 ? O03 PGW 411 A 1 
HETATM 14 C C04 PGW . . . M 5 39.903 2.707 -9.295 1 101.42 ? C04 PGW 411 A 1 
HETATM 15 C C4 PGW . . . M 5 36.05 -5.008 -10.987 1 67.39 ? C4 PGW 411 A 1 
HETATM 16 O O04 PGW . . . M 5 44.432 -0.391 -11.616 1 81.45 ? O04 PGW 411 A 1 
HETATM 17 C C05 PGW . . . M 5 38.879 2.778 -10.407 1 96.97 ? C05 PGW 411 A 1 
HETATM 18 C C5 PGW . . . M 5 35.402 -6.249 -10.417 1 61.59 ? C5 PGW 411 A 1 
HETATM 19 C C06 PGW . . . M 5 32.477 -11.478 -13.654 1 65.54 ? C06 PGW 411 A 1 
HETATM 20 C C6 PGW . . . M 5 34.364 -6.885 -11.314 1 59.48 ? C6 PGW 411 A 1 
HETATM 21 C C07 PGW . . . M 5 31.612 -12.665 -13.922 1 77.11 ? C07 PGW 411 A 1 
HETATM 22 C C7 PGW . . . M 5 33.936 -8.27 -10.848 1 60.03 ? C7 PGW 411 A 1 
HETATM 23 C C08 PGW . . . M 5 30.608 -12.483 -15.044 1 80.63 ? C08 PGW 411 A 1 
HETATM 24 C C8 PGW . . . M 5 33.344 -9.145 -11.906 1 56.32 ? C8 PGW 411 A 1 
HETATM 25 C C09 PGW . . . M 5 30.882 -13.327 -16.263 1 86.82 ? C09 PGW 411 A 1 
HETATM 26 C C9 PGW . . . M 5 33.519 -10.596 -11.582 1 48.82 ? C9 PGW 411 A 1 
HETATM 27 C C10 PGW . . . M 5 33.2 -11.598 -12.35 1 52.81 ? C10 PGW 411 A 1 
HETATM 28 C C11 PGW . . . M 5 32.021 -12.834 -17.12 1 88.92 ? C11 PGW 411 A 1 
HETATM 29 O O11 PGW . . . M 5 42.446 -0.22 -8.807 1 109.74 ? O11 PGW 411 A 1 
HETATM 30 C C12 PGW . . . M 5 32.454 -13.806 -18.188 1 84.45 ? C12 PGW 411 A 1 
HETATM 31 O O12 PGW . . . M 5 40.534 1.392 -9.291 1 110.78 ? O12 PGW 411 A 1 
HETATM 32 C C13 PGW . . . M 5 33.221 -14.986 -17.652 1 76.85 ? C13 PGW 411 A 1 
HETATM 33 O O13 PGW . . . M 5 42.693 2.229 -8.339 1 113.19 ? O13 PGW 411 A 1 
HETATM 34 C C14 PGW . . . M 5 34.543 -14.598 -17.033 1 73.56 ? C14 PGW 411 A 1 
HETATM 35 O O14 PGW . . . M 5 41.122 0.725 -6.908 1 117.66 ? O14 PGW 411 A 1 
HETATM 36 C C15 PGW . . . M 5 44.704 -10.506 -14.942 1 56.69 ? C15 PGW 411 A 1 
HETATM 37 C C16 PGW . . . M 5 43.493 -11.199 -15.516 1 44.94 ? C16 PGW 411 A 1 
HETATM 38 C C17 PGW . . . M 5 42.536 -10.231 -16.169 1 37.22 ? C17 PGW 411 A 1 
HETATM 39 C C18 PGW . . . M 5 41.297 -10.833 -16.787 1 34.41 ? C18 PGW 411 A 1 
HETATM 40 C C19 PGW . . . M 5 44.07 -1.498 -11.919 1 81.83 ? C19 PGW 411 A 1 
HETATM 41 C C20 PGW . . . M 5 44.76 -2.416 -12.877 1 72.66 ? C20 PGW 411 A 1 
HETATM 42 C C21 PGW . . . M 5 43.854 -2.842 -13.991 1 65.59 ? C21 PGW 411 A 1 
HETATM 43 C C22 PGW . . . M 5 43.892 -4.338 -14.249 1 59.47 ? C22 PGW 411 A 1 
HETATM 44 C C23 PGW . . . M 5 44.772 -4.739 -15.406 1 54.47 ? C23 PGW 411 A 1 
HETATM 45 C C24 PGW . . . M 5 45.649 -5.947 -15.16 1 45.74 ? C24 PGW 411 A 1 
HETATM 46 C C25 PGW . . . M 5 45.014 -7.302 -15.396 1 37.48 ? C25 PGW 411 A 1 
HETATM 47 C C26 PGW . . . M 5 46.041 -8.414 -15.511 1 40.05 ? C26 PGW 411 A 1 
HETATM 48 C C27 PGW . . . M 5 45.505 -9.75 -15.974 1 54.11 ? C27 PGW 411 A 1 
HETATM 49 C C28 PGW . . . M 5 40.339 -9.794 -17.332 1 40.5 ? C28 PGW 411 A 1 
HETATM 50 C C29 PGW . . . M 5 39.091 -11.182 -19.07 1 57.23 ? C29 PGW 411 A 1 
HETATM 51 C C30 PGW . . . M 5 39.01 -10.282 -17.859 1 48.89 ? C30 PGW 411 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           257 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           51 
#