data_6TQ9 # _model_server_result.job_id eCEABEOAIvE-HfKi-v5hEQ _model_server_result.datetime_utc '2024-11-22 18:20:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tq9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":406}' # _entry.id 6TQ9 # _exptl.entry_id 6TQ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 308.434 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl 1-thio-beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.09 _cell.angle_gamma 90 _cell.entry_id 6TQ9 _cell.length_a 60.365 _cell.length_b 147.067 _cell.length_c 72.536 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TQ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,U 1 1 B,N,O,P,Q,R,S,T,V 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 95 A CYS 119 1_555 A SG CYS 178 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 B SG CYS 95 B CYS 119 1_555 B SG CYS 178 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? # _chem_comp.formula 'C14 H28 O5 S' _chem_comp.formula_weight 308.434 _chem_comp.id SOG _chem_comp.mon_nstd_flag . _chem_comp.name 'octyl 1-thio-beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms '2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4,5-TRIOL;1-S-OCTYL-BETA-D-THIOGLUCOSIDE;octyl 1-thio-beta-D-glucoside;octyl 1-thio-D-glucoside;octyl 1-thio-glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 SOG sing 467 n n C1 S1 SOG sing 468 n n C1 O5 SOG sing 469 n n C1 H1 SOG sing 470 n n C2 C3 SOG sing 471 n n C2 O2 SOG sing 472 n n C2 H2 SOG sing 473 n n C3 C4 SOG sing 474 n n C3 O3 SOG sing 475 n n C3 H3 SOG sing 476 n n C4 C5 SOG sing 477 n n C4 O4 SOG sing 478 n n C4 H4 SOG sing 479 n n C5 C6 SOG sing 480 n n C5 O5 SOG sing 481 n n C5 H5 SOG sing 482 n n C6 O6 SOG sing 483 n n C6 H61 SOG sing 484 n n C6 H62 SOG sing 485 n n C1' C2' SOG sing 486 n n C1' S1 SOG sing 487 n n C1' "H1'1" SOG sing 488 n n C1' "H1'2" SOG sing 489 n n C2' C3' SOG sing 490 n n C2' "H2'1" SOG sing 491 n n C2' "H2'2" SOG sing 492 n n C3' C4' SOG sing 493 n n C3' "H3'1" SOG sing 494 n n C3' "H3'2" SOG sing 495 n n C4' C5' SOG sing 496 n n C4' "H4'1" SOG sing 497 n n C4' "H4'2" SOG sing 498 n n C5' C6' SOG sing 499 n n C5' "H5'1" SOG sing 500 n n C5' "H5'2" SOG sing 501 n n C6' C7' SOG sing 502 n n C6' "H6'1" SOG sing 503 n n C6' "H6'2" SOG sing 504 n n C7' C8' SOG sing 505 n n C7' "H7'1" SOG sing 506 n n C7' "H7'2" SOG sing 507 n n C8' "H8'1" SOG sing 508 n n C8' "H8'2" SOG sing 509 n n C8' "H8'3" SOG sing 510 n n O2 HO2 SOG sing 511 n n O3 HO3 SOG sing 512 n n O4 HO4 SOG sing 513 n n O6 HO6 SOG sing 514 n n # _atom_sites.entry_id 6TQ9 _atom_sites.fract_transf_matrix[1][1] 0.016566 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006389 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0068 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014776 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NVN A 1 401 401 NVN UNL . D 2 NVN A 1 402 501 NVN UNL . E 3 SOG A 1 403 1 SOG SOG . F 3 SOG A 1 404 5 SOG SOG . G 3 SOG A 1 405 8 SOG SOG . H 3 SOG A 1 406 9 SOG SOG . I 3 SOG A 1 407 13 SOG SOG . J 4 SO4 A 1 408 1 SO4 SO4 . K 4 SO4 A 1 409 4 SO4 SO4 . L 5 PGW A 1 410 1 PGW PGW . M 5 PGW A 1 411 2 PGW PGW . N 2 NVN B 1 401 401 NVN UNL . O 3 SOG B 1 402 2 SOG SOG . P 3 SOG B 1 403 3 SOG SOG . Q 3 SOG B 1 404 4 SOG SOG . R 3 SOG B 1 405 11 SOG SOG . S 3 SOG B 1 406 12 SOG SOG . T 4 SO4 B 1 407 2 SO4 SO4 . U 6 HOH A 1 501 7 HOH HOH . U 6 HOH A 2 502 8 HOH HOH . U 6 HOH A 3 503 10 HOH HOH . U 6 HOH A 4 504 6 HOH HOH . U 6 HOH A 5 505 16 HOH HOH . U 6 HOH A 6 506 12 HOH HOH . U 6 HOH A 7 507 14 HOH HOH . U 6 HOH A 8 508 9 HOH HOH . V 6 HOH B 1 501 4 HOH HOH . V 6 HOH B 2 502 5 HOH HOH . V 6 HOH B 3 503 15 HOH HOH . V 6 HOH B 4 504 11 HOH HOH . V 6 HOH B 5 505 3 HOH HOH . V 6 HOH B 6 506 1 HOH HOH . V 6 HOH B 7 507 2 HOH HOH . V 6 HOH B 8 508 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SOG . . . S 3 -7.736 27.979 15.404 1 141.82 ? C1 SOG 406 B 1 HETATM 2 C C2 SOG . . . S 3 -7.365 29.458 15.318 1 130.71 ? C2 SOG 406 B 1 HETATM 3 C C3 SOG . . . S 3 -6.18 29.796 16.216 1 123.59 ? C3 SOG 406 B 1 HETATM 4 C C4 SOG . . . S 3 -6.404 29.274 17.611 1 133.52 ? C4 SOG 406 B 1 HETATM 5 C C5 SOG . . . S 3 -6.636 27.78 17.519 1 136.54 ? C5 SOG 406 B 1 HETATM 6 C C6 SOG . . . S 3 -6.829 27.133 18.879 1 135.55 ? C6 SOG 406 B 1 HETATM 7 C C1' SOG . . . S 3 -9.467 26.285 13.913 1 154.17 ? C1' SOG 406 B 1 HETATM 8 C C2' SOG . . . S 3 -10.614 26.335 12.922 1 149.06 ? C2' SOG 406 B 1 HETATM 9 C C3' SOG . . . S 3 -10.946 24.997 12.302 1 144.99 ? C3' SOG 406 B 1 HETATM 10 C C4' SOG . . . S 3 -11.791 24.112 13.189 1 138.44 ? C4' SOG 406 B 1 HETATM 11 C C5' SOG . . . S 3 -12.185 22.799 12.551 1 131.37 ? C5' SOG 406 B 1 HETATM 12 C C6' SOG . . . S 3 -12.956 21.87 13.458 1 125.38 ? C6' SOG 406 B 1 HETATM 13 C C7' SOG . . . S 3 -13.186 20.494 12.885 1 122.04 ? C7' SOG 406 B 1 HETATM 14 C C8' SOG . . . S 3 -13.866 19.535 13.834 1 120.39 ? C8' SOG 406 B 1 HETATM 15 S S1 SOG . . . S 3 -9.368 27.961 14.629 1 155.35 ? S1 SOG 406 B 1 HETATM 16 O O2 SOG . . . S 3 -7.053 29.803 13.973 1 127.66 ? O2 SOG 406 B 1 HETATM 17 O O3 SOG . . . S 3 -5.972 31.206 16.241 1 113.69 ? O3 SOG 406 B 1 HETATM 18 O O4 SOG . . . S 3 -5.261 29.534 18.424 1 138.2 ? O4 SOG 406 B 1 HETATM 19 O O5 SOG . . . S 3 -7.831 27.541 16.754 1 139.24 ? O5 SOG 406 B 1 HETATM 20 O O6 SOG . . . S 3 -6.578 25.731 18.812 1 134.1 ? O6 SOG 406 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #