data_6TQG
#
_model_server_result.job_id            PYWwmqTCxEbW3VYAHY1EXQ 
_model_server_result.datetime_utc      '2024-11-14 19:10:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6tqg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":301}' 
#
_entry.id    6TQG 
#
_exptl.entry_id    6TQG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              536.442 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-[1-[(4-bromophenyl)methyl]-6-[3-(methylamino)propylamino]-2,4-bis(oxidanylidene)pyrimidin-5-yl]-~{N}-methyl-benzenesulfonamide 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.98 
_cell.angle_gamma         90 
_cell.entry_id            6TQG 
_cell.length_a            73.011 
_cell.length_b            137.92 
_cell.length_c            73.93 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6TQG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 J N N 
? 2 O N N 
? 2 R N N 
#
_chem_comp.formula           'C22 H26 Br N5 O4 S' 
_chem_comp.formula_weight    536.442 
_chem_comp.id                NVQ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-[1-[(4-bromophenyl)methyl]-6-[3-(methylamino)propylamino]-2,4-bis(oxidanylidene)pyrimidin-5-yl]-~{N}-methyl-benzenesulfonamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C4 NVQ doub 262 n n 
C4 N2 NVQ sing 263 n n 
C4 N1 NVQ sing 264 n n 
N2 C3 NVQ sing 265 n n 
C5 N1 NVQ sing 266 n n 
C5 C13 NVQ sing 267 n n 
N1 C1 NVQ sing 268 n n 
C3 O2 NVQ doub 269 n n 
C3 C2 NVQ sing 270 n n 
C18 C13 NVQ doub 271 n y 
C18 C17 NVQ sing 272 n y 
C13 C14 NVQ sing 273 n y 
C1 C2 NVQ doub 274 n n 
C1 N3 NVQ sing 275 n n 
C6 N4 NVQ sing 276 n n 
C19 N3 NVQ sing 277 n n 
C19 C20 NVQ sing 278 n n 
C2 N4 NVQ sing 279 n n 
N5 C21 NVQ sing 280 n n 
N5 C22 NVQ sing 281 n n 
C17 C16 NVQ doub 282 n y 
C14 C15 NVQ doub 283 n y 
N4 S1 NVQ sing 284 n n 
C21 C20 NVQ sing 285 n n 
C16 C15 NVQ sing 286 n y 
C16 BR1 NVQ sing 287 n n 
S1 O4 NVQ doub 288 n n 
S1 C7 NVQ sing 289 n n 
S1 O3 NVQ doub 290 n n 
C7 C8 NVQ doub 291 n y 
C7 C12 NVQ sing 292 n y 
C8 C9 NVQ sing 293 n y 
C12 C11 NVQ doub 294 n y 
C9 C10 NVQ doub 295 n y 
C11 C10 NVQ sing 296 n y 
N2 H1 NVQ sing 297 n n 
C5 H2 NVQ sing 298 n n 
C5 H3 NVQ sing 299 n n 
N3 H4 NVQ sing 300 n n 
C6 H5 NVQ sing 301 n n 
C6 H6 NVQ sing 302 n n 
C6 H7 NVQ sing 303 n n 
C8 H8 NVQ sing 304 n n 
C9 H9 NVQ sing 305 n n 
C10 H10 NVQ sing 306 n n 
C11 H11 NVQ sing 307 n n 
C12 H12 NVQ sing 308 n n 
C14 H13 NVQ sing 309 n n 
C15 H14 NVQ sing 310 n n 
C17 H15 NVQ sing 311 n n 
C18 H16 NVQ sing 312 n n 
C19 H17 NVQ sing 313 n n 
C19 H18 NVQ sing 314 n n 
C20 H19 NVQ sing 315 n n 
C20 H20 NVQ sing 316 n n 
C21 H21 NVQ sing 317 n n 
C21 H22 NVQ sing 318 n n 
N5 H23 NVQ sing 319 n n 
C22 H25 NVQ sing 320 n n 
C22 H26 NVQ sing 321 n n 
C22 H27 NVQ sing 322 n n 
#
_atom_sites.entry_id                     6TQG 
_atom_sites.fract_transf_matrix[1][1]    0.013697 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003157 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007251 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013881 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NVQ A 1 301 301 NVQ GY1 . 
F 3 MES A 1 302 401 MES MES . 
G 4 CL A 1 303 2 CL CL . 
H 4 CL A 1 304 4 CL CL . 
I 4 CL A 1 305 6 CL CL . 
J 2 NVQ B 1 301 301 NVQ GY1 . 
K 3 MES B 1 302 401 MES MES . 
L 4 CL B 1 303 1 CL CL . 
M 4 CL B 1 304 3 CL CL . 
N 4 CL B 1 305 7 CL CL . 
O 2 NVQ C 1 301 301 NVQ GY1 . 
P 3 MES C 1 302 401 MES MES . 
Q 4 CL C 1 303 5 CL CL . 
R 2 NVQ D 1 301 301 NVQ GY1 . 
S 3 MES D 1 302 401 MES MES . 
T 4 CL D 1 303 8 CL CL . 
U 5 HOH A 1 401 236 HOH HOH . 
U 5 HOH A 2 402 223 HOH HOH . 
U 5 HOH A 3 403 45 HOH HOH . 
U 5 HOH A 4 404 182 HOH HOH . 
U 5 HOH A 5 405 147 HOH HOH . 
U 5 HOH A 6 406 82 HOH HOH . 
U 5 HOH A 7 407 135 HOH HOH . 
U 5 HOH A 8 408 60 HOH HOH . 
U 5 HOH A 9 409 130 HOH HOH . 
U 5 HOH A 10 410 83 HOH HOH . 
U 5 HOH A 11 411 126 HOH HOH . 
U 5 HOH A 12 412 34 HOH HOH . 
U 5 HOH A 13 413 79 HOH HOH . 
U 5 HOH A 14 414 117 HOH HOH . 
U 5 HOH A 15 415 54 HOH HOH . 
U 5 HOH A 16 416 222 HOH HOH . 
U 5 HOH A 17 417 46 HOH HOH . 
U 5 HOH A 18 418 88 HOH HOH . 
U 5 HOH A 19 419 221 HOH HOH . 
U 5 HOH A 20 420 134 HOH HOH . 
U 5 HOH A 21 421 47 HOH HOH . 
U 5 HOH A 22 422 196 HOH HOH . 
U 5 HOH A 23 423 32 HOH HOH . 
U 5 HOH A 24 424 106 HOH HOH . 
U 5 HOH A 25 425 230 HOH HOH . 
U 5 HOH A 26 426 27 HOH HOH . 
U 5 HOH A 27 427 132 HOH HOH . 
U 5 HOH A 28 428 22 HOH HOH . 
U 5 HOH A 29 429 122 HOH HOH . 
U 5 HOH A 30 430 101 HOH HOH . 
U 5 HOH A 31 431 16 HOH HOH . 
V 5 HOH B 1 401 227 HOH HOH . 
V 5 HOH B 2 402 225 HOH HOH . 
V 5 HOH B 3 403 38 HOH HOH . 
V 5 HOH B 4 404 154 HOH HOH . 
V 5 HOH B 5 405 235 HOH HOH . 
V 5 HOH B 6 406 95 HOH HOH . 
V 5 HOH B 7 407 87 HOH HOH . 
V 5 HOH B 8 408 232 HOH HOH . 
V 5 HOH B 9 409 234 HOH HOH . 
V 5 HOH B 10 410 233 HOH HOH . 
V 5 HOH B 11 411 49 HOH HOH . 
V 5 HOH B 12 412 155 HOH HOH . 
V 5 HOH B 13 413 229 HOH HOH . 
V 5 HOH B 14 414 74 HOH HOH . 
V 5 HOH B 15 415 238 HOH HOH . 
V 5 HOH B 16 416 19 HOH HOH . 
V 5 HOH B 17 417 226 HOH HOH . 
V 5 HOH B 18 418 37 HOH HOH . 
V 5 HOH B 19 419 112 HOH HOH . 
V 5 HOH B 20 420 171 HOH HOH . 
W 5 HOH C 1 401 91 HOH HOH . 
W 5 HOH C 2 402 9 HOH HOH . 
W 5 HOH C 3 403 224 HOH HOH . 
W 5 HOH C 4 404 2 HOH HOH . 
W 5 HOH C 5 405 183 HOH HOH . 
W 5 HOH C 6 406 25 HOH HOH . 
W 5 HOH C 7 407 116 HOH HOH . 
W 5 HOH C 8 408 1 HOH HOH . 
W 5 HOH C 9 409 33 HOH HOH . 
W 5 HOH C 10 410 30 HOH HOH . 
W 5 HOH C 11 411 28 HOH HOH . 
W 5 HOH C 12 412 237 HOH HOH . 
W 5 HOH C 13 413 24 HOH HOH . 
W 5 HOH C 14 414 35 HOH HOH . 
W 5 HOH C 15 415 191 HOH HOH . 
W 5 HOH C 16 416 192 HOH HOH . 
W 5 HOH C 17 417 115 HOH HOH . 
W 5 HOH C 18 418 84 HOH HOH . 
W 5 HOH C 19 419 195 HOH HOH . 
W 5 HOH C 20 420 218 HOH HOH . 
W 5 HOH C 21 421 129 HOH HOH . 
W 5 HOH C 22 422 61 HOH HOH . 
W 5 HOH C 23 423 175 HOH HOH . 
W 5 HOH C 24 424 220 HOH HOH . 
W 5 HOH C 25 425 41 HOH HOH . 
X 5 HOH D 1 401 17 HOH HOH . 
X 5 HOH D 2 402 42 HOH HOH . 
X 5 HOH D 3 403 228 HOH HOH . 
X 5 HOH D 4 404 72 HOH HOH . 
X 5 HOH D 5 405 21 HOH HOH . 
X 5 HOH D 6 406 56 HOH HOH . 
X 5 HOH D 7 407 5 HOH HOH . 
X 5 HOH D 8 408 77 HOH HOH . 
X 5 HOH D 9 409 204 HOH HOH . 
X 5 HOH D 10 410 123 HOH HOH . 
X 5 HOH D 11 411 105 HOH HOH . 
X 5 HOH D 12 412 92 HOH HOH . 
X 5 HOH D 13 413 50 HOH HOH . 
X 5 HOH D 14 414 231 HOH HOH . 
X 5 HOH D 15 415 15 HOH HOH . 
X 5 HOH D 16 416 67 HOH HOH . 
X 5 HOH D 17 417 142 HOH HOH . 
X 5 HOH D 18 418 31 HOH HOH . 
X 5 HOH D 19 419 29 HOH HOH . 
X 5 HOH D 20 420 133 HOH HOH . 
X 5 HOH D 21 421 75 HOH HOH . 
X 5 HOH D 22 422 145 HOH HOH . 
X 5 HOH D 23 423 109 HOH HOH . 
X 5 HOH D 24 424 69 HOH HOH . 
X 5 HOH D 25 425 164 HOH HOH . 
X 5 HOH D 26 426 97 HOH HOH . 
X 5 HOH D 27 427 80 HOH HOH . 
X 5 HOH D 28 428 159 HOH HOH . 
X 5 HOH D 29 429 104 HOH HOH . 
X 5 HOH D 30 430 111 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 NVQ . . . J 2 1.374 -36.504 16.535 1 36.95 ? N1 NVQ 301 B 1 
HETATM 2 C C1 NVQ . . . J 2 0.746 -35.857 15.469 1 38.75 ? C1 NVQ 301 B 1 
HETATM 3 C C2 NVQ . . . J 2 0.914 -34.424 15.301 1 37.69 ? C2 NVQ 301 B 1 
HETATM 4 C C3 NVQ . . . J 2 1.629 -33.683 16.31 1 36.3 ? C3 NVQ 301 B 1 
HETATM 5 N N2 NVQ . . . J 2 2.143 -34.427 17.353 1 35.56 ? N2 NVQ 301 B 1 
HETATM 6 C C4 NVQ . . . J 2 2.037 -35.787 17.515 1 36.42 ? C4 NVQ 301 B 1 
HETATM 7 O O1 NVQ . . . J 2 2.53 -36.34 18.489 1 36.74 ? O1 NVQ 301 B 1 
HETATM 8 O O2 NVQ . . . J 2 1.815 -32.464 16.311 1 36.16 ? O2 NVQ 301 B 1 
HETATM 9 C C5 NVQ . . . J 2 1.21 -37.95 16.807 1 36.36 ? C5 NVQ 301 B 1 
HETATM 10 N N3 NVQ . . . J 2 0.093 -36.591 14.461 1 40.11 ? N3 NVQ 301 B 1 
HETATM 11 N N4 NVQ . . . J 2 0.325 -33.681 14.201 1 37.86 ? N4 NVQ 301 B 1 
HETATM 12 S S1 NVQ . . . J 2 1.08 -33.589 12.701 1 42.21 ? S1 NVQ 301 B 1 
HETATM 13 C C6 NVQ . . . J 2 -0.906 -32.938 14.413 1 37.77 ? C6 NVQ 301 B 1 
HETATM 14 C C7 NVQ . . . J 2 2.558 -32.664 12.95 1 42.5 ? C7 NVQ 301 B 1 
HETATM 15 C C8 NVQ . . . J 2 3.7 -33.307 13.389 1 42.98 ? C8 NVQ 301 B 1 
HETATM 16 C C9 NVQ . . . J 2 4.86 -32.575 13.57 1 43.62 ? C9 NVQ 301 B 1 
HETATM 17 C C10 NVQ . . . J 2 4.875 -31.221 13.33 1 43.43 ? C10 NVQ 301 B 1 
HETATM 18 C C11 NVQ . . . J 2 3.732 -30.587 12.905 1 43.47 ? C11 NVQ 301 B 1 
HETATM 19 C C12 NVQ . . . J 2 2.563 -31.302 12.71 1 42.52 ? C12 NVQ 301 B 1 
HETATM 20 O O3 NVQ . . . J 2 1.458 -34.92 12.343 1 41.93 ? O3 NVQ 301 B 1 
HETATM 21 O O4 NVQ . . . J 2 0.232 -32.837 11.824 1 36.47 ? O4 NVQ 301 B 1 
HETATM 22 C C13 NVQ . . . J 2 2.316 -38.898 16.41 1 35.48 ? C13 NVQ 301 B 1 
HETATM 23 C C14 NVQ . . . J 2 3.571 -38.469 16.004 1 35.86 ? C14 NVQ 301 B 1 
HETATM 24 C C15 NVQ . . . J 2 4.552 -39.383 15.655 1 34.95 ? C15 NVQ 301 B 1 
HETATM 25 C C16 NVQ . . . J 2 4.266 -40.73 15.73 1 37.51 ? C16 NVQ 301 B 1 
HETATM 26 C C17 NVQ . . . J 2 3.035 -41.183 16.13 1 36.23 ? C17 NVQ 301 B 1 
HETATM 27 C C18 NVQ . . . J 2 2.068 -40.26 16.478 1 35.78 ? C18 NVQ 301 B 1 
HETATM 28 BR BR1 NVQ . . . J 2 5.592 -42.007 15.265 1 40.3 ? BR1 NVQ 301 B 1 
HETATM 29 C C19 NVQ . . . J 2 -0.806 -37.731 14.577 1 42.07 ? C19 NVQ 301 B 1 
HETATM 30 C C20 NVQ . . . J 2 -0.26 -38.939 13.834 1 41.13 ? C20 NVQ 301 B 1 
HETATM 31 C C21 NVQ . . . J 2 -1.309 -39.975 13.502 1 44.09 ? C21 NVQ 301 B 1 
HETATM 32 N N5 NVQ . . . J 2 -0.728 -41.318 13.372 1 45.38 ? N5 NVQ 301 B 1 
HETATM 33 C C22 NVQ . . . J 2 -0.694 -42.082 14.631 1 44.07 ? C22 NVQ 301 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           38 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           215 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           33 
#