data_6TQK # _model_server_result.job_id Z5uABgaPQNQzBCWstiWWag _model_server_result.datetime_utc '2025-01-13 07:33:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tqk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":601}' # _entry.id 6TQK # _exptl.entry_id 6TQK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TQK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TQK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 I N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 5 ? 3 5 4 NAG MAN C1 O1 . O2 HO2 . sing 6 ? 3 6 5 GAL NAG C1 O1 . O4 HO4 . sing 7 ? 3 7 4 NAG MAN C1 O1 . O4 HO4 . sing 8 ? 3 8 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n D NAG 1 D 1 NAG A 761 NAG 2 n D NAG 2 D 2 NAG A 762 NAG 3 n E NAG 1 E 1 NAG A 771 NAG 3 n E NAG 2 E 2 NAG A 772 NAG 3 n E BMA 3 E 3 BMA A 773 BMA 3 n E MAN 4 E 4 MAN A 774 MAN 3 n E NAG 5 E 5 NAG A 776 NAG 3 n E GAL 6 E 6 GAL A 778 GAL 3 n E NAG 7 E 7 NAG A 777 NAG 3 n E MAN 8 E 8 MAN A 775 MAN 2 n F NAG 1 F 1 NAG C 761 NAG 2 n F NAG 2 F 2 NAG C 762 NAG 3 n G NAG 1 G 1 NAG C 771 NAG 3 n G NAG 2 G 2 NAG C 772 NAG 3 n G BMA 3 G 3 BMA C 773 BMA 3 n G MAN 4 G 4 MAN C 774 MAN 3 n G NAG 5 G 5 NAG C 776 NAG 3 n G GAL 6 G 6 GAL C 778 GAL 3 n G NAG 7 G 7 NAG C 777 NAG 3 n G MAN 8 G 8 MAN C 775 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 273 A CYS 297 1_555 A SG CYS 282 A CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 276 A CYS 300 1_555 A SG CYS 291 A CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 293 A CYS 317 1_555 A SG CYS 323 A CYS 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 311 A CYS 335 1_555 A SG CYS 401 A CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 A SG CYS 342 A CYS 366 1_555 A SG CYS 365 A CYS 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf6 A SG CYS 482 A CYS 506 1_555 A SG CYS 542 A CYS 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 A SG CYS 503 A CYS 527 1_555 A SG CYS 558 A CYS 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf8 A SG CYS 547 A CYS 571 1_555 A SG CYS 554 A CYS 578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf9 B SG CYS 482 B CYS 506 1_555 B SG CYS 542 B CYS 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf10 B SG CYS 503 B CYS 527 1_555 B SG CYS 558 B CYS 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf11 B SG CYS 547 B CYS 571 1_555 B SG CYS 554 B CYS 578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf12 C SG CYS 273 C CYS 297 1_555 C SG CYS 282 C CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf13 C SG CYS 276 C CYS 300 1_555 C SG CYS 291 C CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf14 C SG CYS 293 C CYS 317 1_555 C SG CYS 323 C CYS 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf15 C SG CYS 311 C CYS 335 1_555 C SG CYS 401 C CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf16 C SG CYS 342 C CYS 366 1_555 C SG CYS 365 C CYS 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 A ND2 ASN 298 A ASN 322 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale2 A ND2 ASN 372 A ASN 396 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale3 A ND2 ASN 489 A ASN 513 1_555 H C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale4 B ND2 ASN 489 B ASN 513 1_555 I C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale5 C ND2 ASN 298 C ASN 322 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale6 C ND2 ASN 372 C ASN 396 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale7 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale8 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale9 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale10 E O3 BMA . E BMA 3 1_555 E C1 MAN . E MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale11 E O6 BMA . E BMA 3 1_555 E C1 MAN . E MAN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale12 E O2 MAN . E MAN 4 1_555 E C1 NAG . E NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale13 E O4 MAN . E MAN 4 1_555 E C1 NAG . E NAG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale14 E O4 NAG . E NAG 5 1_555 E C1 GAL . E GAL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale15 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale16 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale17 G O4 NAG . G NAG 2 1_555 G C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale18 G O3 BMA . G BMA 3 1_555 G C1 MAN . G MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale19 G O6 BMA . G BMA 3 1_555 G C1 MAN . G MAN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale20 G O2 MAN . G MAN 4 1_555 G C1 NAG . G NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale21 G O4 MAN . G MAN 4 1_555 G C1 NAG . G NAG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale22 G O4 NAG . G NAG 5 1_555 G C1 GAL . G GAL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 307 n n C1 O1 NAG sing 308 n n C1 O5 NAG sing 309 n n C1 H1 NAG sing 310 n n C2 C3 NAG sing 311 n n C2 N2 NAG sing 312 n n C2 H2 NAG sing 313 n n C3 C4 NAG sing 314 n n C3 O3 NAG sing 315 n n C3 H3 NAG sing 316 n n C4 C5 NAG sing 317 n n C4 O4 NAG sing 318 n n C4 H4 NAG sing 319 n n C5 C6 NAG sing 320 n n C5 O5 NAG sing 321 n n C5 H5 NAG sing 322 n n C6 O6 NAG sing 323 n n C6 H61 NAG sing 324 n n C6 H62 NAG sing 325 n n C7 C8 NAG sing 326 n n C7 N2 NAG sing 327 n n C7 O7 NAG doub 328 n n C8 H81 NAG sing 329 n n C8 H82 NAG sing 330 n n C8 H83 NAG sing 331 n n N2 HN2 NAG sing 332 n n O1 HO1 NAG sing 333 n n O3 HO3 NAG sing 334 n n O4 HO4 NAG sing 335 n n O6 HO6 NAG sing 336 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6TQK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 4 NAG A 1 601 781 NAG NAG . I 4 NAG B 1 601 781 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . I 4 128.896 130.473 117.641 1 119.05 ? C1 NAG 601 B 1 HETATM 2 C C2 NAG . . . I 4 127.423 130.871 117.607 1 119.05 ? C2 NAG 601 B 1 HETATM 3 C C3 NAG . . . I 4 126.54 129.638 117.754 1 119.05 ? C3 NAG 601 B 1 HETATM 4 C C4 NAG . . . I 4 126.905 128.6 116.7 1 119.05 ? C4 NAG 601 B 1 HETATM 5 C C5 NAG . . . I 4 128.398 128.29 116.761 1 119.05 ? C5 NAG 601 B 1 HETATM 6 C C6 NAG . . . I 4 128.854 127.366 115.655 1 119.05 ? C6 NAG 601 B 1 HETATM 7 C C7 NAG . . . I 4 127.297 133.162 118.483 1 119.05 ? C7 NAG 601 B 1 HETATM 8 C C8 NAG . . . I 4 126.934 134.022 119.655 1 119.05 ? C8 NAG 601 B 1 HETATM 9 N N2 NAG . . . I 4 127.12 131.845 118.644 1 119.05 ? N2 NAG 601 B 1 HETATM 10 O O3 NAG . . . I 4 125.174 130.014 117.614 1 119.05 ? O3 NAG 601 B 1 HETATM 11 O O4 NAG . . . I 4 126.166 127.403 116.916 1 119.05 ? O4 NAG 601 B 1 HETATM 12 O O5 NAG . . . I 4 129.156 129.501 116.622 1 119.05 ? O5 NAG 601 B 1 HETATM 13 O O6 NAG . . . I 4 129.944 127.922 114.933 1 119.05 ? O6 NAG 601 B 1 HETATM 14 O O7 NAG . . . I 4 127.735 133.636 117.439 1 119.05 ? O7 NAG 601 B 1 HETATM 15 H H2 NAG . . . I 4 127.236 131.274 116.738 1 119.05 ? H2 NAG 601 B 1 HETATM 16 H H3 NAG . . . I 4 126.675 129.252 118.64 1 119.05 ? H3 NAG 601 B 1 HETATM 17 H H4 NAG . . . I 4 126.689 128.952 115.816 1 119.05 ? H4 NAG 601 B 1 HETATM 18 H H5 NAG . . . I 4 128.603 127.88 117.622 1 119.05 ? H5 NAG 601 B 1 HETATM 19 H H61 NAG . . . I 4 128.111 127.212 115.041 1 119.05 ? H61 NAG 601 B 1 HETATM 20 H H62 NAG . . . I 4 129.131 126.514 116.042 1 119.05 ? H62 NAG 601 B 1 HETATM 21 H H81 NAG . . . I 4 127.105 134.958 119.434 1 119.05 ? H81 NAG 601 B 1 HETATM 22 H H82 NAG . . . I 4 127.473 133.766 120.428 1 119.05 ? H82 NAG 601 B 1 HETATM 23 H H83 NAG . . . I 4 125.988 133.907 119.866 1 119.05 ? H83 NAG 601 B 1 HETATM 24 H HN2 NAG . . . I 4 126.792 131.545 119.44 1 119.05 ? HN2 NAG 601 B 1 HETATM 25 H HO3 NAG . . . I 4 124.806 129.55 116.953 1 119.05 ? HO3 NAG 601 B 1 HETATM 26 H HO4 NAG . . . I 4 125.857 127.103 116.139 1 119.05 ? HO4 NAG 601 B 1 HETATM 27 H HO6 NAG . . . I 4 129.636 128.49 114.324 1 119.05 ? HO6 NAG 601 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 373 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #