data_6TQM
#
_model_server_result.job_id            sB0X9A-Ev5koJioK77RkMQ 
_model_server_result.datetime_utc      '2024-10-25 20:25:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6tqm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":902}' 
#
_entry.id    6TQM 
#
_exptl.entry_id    6TQM 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              665.441 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6TQM 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6TQM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C OD1 ASP 653 B ASP 653 1_555 E FE FE . B FE 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? 
metalc ? metalc2 C OD2 ASP 653 B ASP 653 1_555 E FE FE . B FE 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc3 C NE2 HIS 657 B HIS 657 1_555 E FE FE . B FE 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc4 C NE2 HIS 723 B HIS 723 1_555 E FE FE . B FE 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc5 C NE2 HIS 737 B HIS 737 1_555 E FE FE . B FE 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc6 D OD1 ASP 653 A ASP 653 1_555 G FE FE . A FE 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? 
metalc ? metalc7 D OD2 ASP 653 A ASP 653 1_555 G FE FE . A FE 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
metalc ? metalc8 D NE2 HIS 657 A HIS 657 1_555 G FE FE . A FE 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
metalc ? metalc9 D NE2 HIS 723 A HIS 723 1_555 G FE FE . A FE 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc10 D NE2 HIS 737 A HIS 737 1_555 G FE FE . A FE 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
#
_chem_comp.formula           'C21 H29 N7 O14 P2' 
_chem_comp.formula_weight    665.441 
_chem_comp.id                NAI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     NADH 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAI doub 235 n n 
PA O2A NAI sing 236 n n 
PA O5B NAI sing 237 n n 
PA O3 NAI sing 238 n n 
O2A HOA2 NAI sing 239 n n 
O5B C5B NAI sing 240 n n 
C5B C4B NAI sing 241 n n 
C5B H51A NAI sing 242 n n 
C5B H52A NAI sing 243 n n 
C4B O4B NAI sing 244 n n 
C4B C3B NAI sing 245 n n 
C4B H4B NAI sing 246 n n 
O4B C1B NAI sing 247 n n 
C3B O3B NAI sing 248 n n 
C3B C2B NAI sing 249 n n 
C3B H3B NAI sing 250 n n 
O3B HO3A NAI sing 251 n n 
C2B O2B NAI sing 252 n n 
C2B C1B NAI sing 253 n n 
C2B H2B NAI sing 254 n n 
O2B HO2A NAI sing 255 n n 
C1B N9A NAI sing 256 n n 
C1B H1B NAI sing 257 n n 
N9A C8A NAI sing 258 n y 
N9A C4A NAI sing 259 n y 
C8A N7A NAI doub 260 n y 
C8A H8A NAI sing 261 n n 
N7A C5A NAI sing 262 n y 
C5A C6A NAI sing 263 n y 
C5A C4A NAI doub 264 n y 
C6A N6A NAI sing 265 n n 
C6A N1A NAI doub 266 n y 
N6A H61A NAI sing 267 n n 
N6A H62A NAI sing 268 n n 
N1A C2A NAI sing 269 n y 
C2A N3A NAI doub 270 n y 
C2A H2A NAI sing 271 n n 
N3A C4A NAI sing 272 n y 
O3 PN NAI sing 273 n n 
PN O1N NAI sing 274 n n 
PN O2N NAI doub 275 n n 
PN O5D NAI sing 276 n n 
O1N HO1N NAI sing 277 n n 
O5D C5D NAI sing 278 n n 
C5D C4D NAI sing 279 n n 
C5D H51N NAI sing 280 n n 
C5D H52N NAI sing 281 n n 
C4D O4D NAI sing 282 n n 
C4D C3D NAI sing 283 n n 
C4D H4D NAI sing 284 n n 
O4D C1D NAI sing 285 n n 
C3D O3D NAI sing 286 n n 
C3D C2D NAI sing 287 n n 
C3D H3D NAI sing 288 n n 
O3D HO3N NAI sing 289 n n 
C2D O2D NAI sing 290 n n 
C2D C1D NAI sing 291 n n 
C2D H2D NAI sing 292 n n 
O2D HO2N NAI sing 293 n n 
C1D N1N NAI sing 294 n n 
C1D H1D NAI sing 295 n n 
N1N C2N NAI sing 296 n n 
N1N C6N NAI sing 297 n n 
C2N C3N NAI doub 298 n n 
C2N H2N NAI sing 299 n n 
C3N C7N NAI sing 300 n n 
C3N C4N NAI sing 301 n n 
C7N O7N NAI doub 302 n n 
C7N N7N NAI sing 303 n n 
N7N H71N NAI sing 304 n n 
N7N H72N NAI sing 305 n n 
C4N C5N NAI sing 306 n n 
C4N H4N NAI sing 307 n n 
C4N H42N NAI sing 308 n n 
C5N C6N NAI doub 309 n n 
C5N H5N NAI sing 310 n n 
C6N H6N NAI sing 311 n n 
#
_atom_sites.entry_id                     6TQM 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FE B 1 901 901 FE FE . 
F 3 NAI B 1 902 1001 NAI NAI . 
G 2 FE A 1 901 901 FE FE . 
H 3 NAI A 1 902 1001 NAI NAI . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAI . . . H 3 148.491 203.623 201.54 1 178.31 ? PA NAI 902 A 1 
HETATM 2 O O1A NAI . . . H 3 149.34 204.108 202.754 1 178.31 ? O1A NAI 902 A 1 
HETATM 3 O O2A NAI . . . H 3 148.439 204.693 200.486 1 178.31 ? O2A NAI 902 A 1 
HETATM 4 O O5B NAI . . . H 3 146.974 203.185 202.042 1 178.31 ? O5B NAI 902 A 1 
HETATM 5 C C5B NAI . . . H 3 146.272 203.994 202.936 1 178.31 ? C5B NAI 902 A 1 
HETATM 6 C C4B NAI . . . H 3 144.731 203.854 202.698 1 178.31 ? C4B NAI 902 A 1 
HETATM 7 O O4B NAI . . . H 3 144.127 205.02 202.721 1 178.31 ? O4B NAI 902 A 1 
HETATM 8 C C3B NAI . . . H 3 144.451 203.34 201.308 1 178.31 ? C3B NAI 902 A 1 
HETATM 9 O O3B NAI . . . H 3 144.594 201.974 201.281 1 178.31 ? O3B NAI 902 A 1 
HETATM 10 C C2B NAI . . . H 3 142.982 203.803 201.071 1 178.31 ? C2B NAI 902 A 1 
HETATM 11 O O2B NAI . . . H 3 142.064 202.836 201.686 1 178.31 ? O2B NAI 902 A 1 
HETATM 12 C C1B NAI . . . H 3 142.865 204.932 201.697 1 178.31 ? C1B NAI 902 A 1 
HETATM 13 N N9A NAI . . . H 3 142.873 206.168 200.891 1 178.31 ? N9A NAI 902 A 1 
HETATM 14 C C8A NAI . . . H 3 143.269 207.279 201.472 1 178.31 ? C8A NAI 902 A 1 
HETATM 15 N N7A NAI . . . H 3 143.198 208.286 200.609 1 178.31 ? N7A NAI 902 A 1 
HETATM 16 C C5A NAI . . . H 3 142.746 207.795 199.47 1 178.31 ? C5A NAI 902 A 1 
HETATM 17 C C6A NAI . . . H 3 142.491 208.406 198.266 1 178.31 ? C6A NAI 902 A 1 
HETATM 18 N N6A NAI . . . H 3 142.613 209.733 197.816 1 178.31 ? N6A NAI 902 A 1 
HETATM 19 N N1A NAI . . . H 3 142.043 207.728 197.261 1 178.31 ? N1A NAI 902 A 1 
HETATM 20 C C2A NAI . . . H 3 141.828 206.412 197.41 1 178.31 ? C2A NAI 902 A 1 
HETATM 21 N N3A NAI . . . H 3 142.071 205.801 198.585 1 178.31 ? N3A NAI 902 A 1 
HETATM 22 C C4A NAI . . . H 3 142.535 206.502 199.624 1 178.31 ? C4A NAI 902 A 1 
HETATM 23 O O3 NAI . . . H 3 149.176 202.24 200.895 1 178.31 ? O3 NAI 902 A 1 
HETATM 24 P PN NAI . . . H 3 148.476 200.784 201.319 1 178.31 ? PN NAI 902 A 1 
HETATM 25 O O1N NAI . . . H 3 147.1 200.717 200.735 1 178.31 ? O1N NAI 902 A 1 
HETATM 26 O O2N NAI . . . H 3 148.337 200.745 202.866 1 178.31 ? O2N NAI 902 A 1 
HETATM 27 O O5D NAI . . . H 3 149.412 199.523 200.765 1 178.31 ? O5D NAI 902 A 1 
HETATM 28 C C5D NAI . . . H 3 150.372 199.014 201.581 1 178.31 ? C5D NAI 902 A 1 
HETATM 29 C C4D NAI . . . H 3 150.018 197.534 201.912 1 178.31 ? C4D NAI 902 A 1 
HETATM 30 O O4D NAI . . . H 3 149.829 196.886 200.806 1 178.31 ? O4D NAI 902 A 1 
HETATM 31 C C3D NAI . . . H 3 151.188 196.837 202.661 1 178.31 ? C3D NAI 902 A 1 
HETATM 32 O O3D NAI . . . H 3 150.869 196.655 203.948 1 178.31 ? O3D NAI 902 A 1 
HETATM 33 C C2D NAI . . . H 3 151.352 195.481 201.985 1 178.31 ? C2D NAI 902 A 1 
HETATM 34 O O2D NAI . . . H 3 150.659 194.444 202.786 1 178.31 ? O2D NAI 902 A 1 
HETATM 35 C C1D NAI . . . H 3 150.806 195.597 200.796 1 178.31 ? C1D NAI 902 A 1 
HETATM 36 N N1N NAI . . . H 3 151.826 195.778 199.801 1 178.31 ? N1N NAI 902 A 1 
HETATM 37 C C2N NAI . . . H 3 152.131 194.707 198.896 1 178.31 ? C2N NAI 902 A 1 
HETATM 38 C C3N NAI . . . H 3 152.678 195.047 197.499 1 178.31 ? C3N NAI 902 A 1 
HETATM 39 C C7N NAI . . . H 3 151.883 194.46 196.305 1 178.31 ? C7N NAI 902 A 1 
HETATM 40 O O7N NAI . . . H 3 151.389 195.186 195.494 1 178.31 ? O7N NAI 902 A 1 
HETATM 41 N N7N NAI . . . H 3 151.745 193.031 196.203 1 178.31 ? N7N NAI 902 A 1 
HETATM 42 C C4N NAI . . . H 3 153.446 196.339 197.281 1 178.31 ? C4N NAI 902 A 1 
HETATM 43 C C5N NAI . . . H 3 153.576 197.194 198.549 1 178.31 ? C5N NAI 902 A 1 
HETATM 44 C C6N NAI . . . H 3 152.556 197.025 199.685 1 178.31 ? C6N NAI 902 A 1 
HETATM 45 H H51A NAI . . . H 3 146.482 203.726 203.844 1 178.31 ? H51A NAI 902 A 1 
HETATM 46 H H52A NAI . . . H 3 146.534 204.919 202.805 1 178.31 ? H52A NAI 902 A 1 
HETATM 47 H H4B NAI . . . H 3 144.338 203.263 203.359 1 178.31 ? H4B NAI 902 A 1 
HETATM 48 H H3B NAI . . . H 3 145.043 203.763 200.666 1 178.31 ? H3B NAI 902 A 1 
HETATM 49 H HO3A NAI . . . H 3 145.363 201.763 201.574 1 178.31 ? HO3A NAI 902 A 1 
HETATM 50 H H2B NAI . . . H 3 142.8 203.901 200.124 1 178.31 ? H2B NAI 902 A 1 
HETATM 51 H HO2A NAI . . . H 3 142.503 202.316 202.195 1 178.31 ? HO2A NAI 902 A 1 
HETATM 52 H H1B NAI . . . H 3 142.048 204.909 202.219 1 178.31 ? H1B NAI 902 A 1 
HETATM 53 H H8A NAI . . . H 3 143.591 207.731 202.218 1 178.31 ? H8A NAI 902 A 1 
HETATM 54 H H61A NAI . . . H 3 142.851 210.352 198.363 1 178.31 ? H61A NAI 902 A 1 
HETATM 55 H H62A NAI . . . H 3 142.449 209.924 196.994 1 178.31 ? H62A NAI 902 A 1 
HETATM 56 H H2A NAI . . . H 3 141.505 205.919 196.692 1 178.31 ? H2A NAI 902 A 1 
HETATM 57 H H51N NAI . . . H 3 151.232 199.053 201.135 1 178.31 ? H51N NAI 902 A 1 
HETATM 58 H H52N NAI . . . H 3 150.41 199.53 202.401 1 178.31 ? H52N NAI 902 A 1 
HETATM 59 H H4D NAI . . . H 3 149.215 197.496 202.454 1 178.31 ? H4D NAI 902 A 1 
HETATM 60 H H3D NAI . . . H 3 152.003 197.356 202.578 1 178.31 ? H3D NAI 902 A 1 
HETATM 61 H HO3N NAI . . . H 3 151.024 195.849 204.168 1 178.31 ? HO3N NAI 902 A 1 
HETATM 62 H H2D NAI . . . H 3 152.294 195.265 201.898 1 178.31 ? H2D NAI 902 A 1 
HETATM 63 H HO2N NAI . . . H 3 151.231 193.897 203.096 1 178.31 ? HO2N NAI 902 A 1 
HETATM 64 H H1D NAI . . . H 3 150.288 194.801 200.599 1 178.31 ? H1D NAI 902 A 1 
HETATM 65 H H2N NAI . . . H 3 151.828 193.847 199.078 1 178.31 ? H2N NAI 902 A 1 
HETATM 66 H H71N NAI . . . H 3 151.306 192.688 195.548 1 178.31 ? H71N NAI 902 A 1 
HETATM 67 H H72N NAI . . . H 3 152.104 192.52 196.794 1 178.31 ? H72N NAI 902 A 1 
HETATM 68 H H4N NAI . . . H 3 152.988 196.86 196.603 1 178.31 ? H4N NAI 902 A 1 
HETATM 69 H H42N NAI . . . H 3 154.336 196.119 196.963 1 178.31 ? H42N NAI 902 A 1 
HETATM 70 H H5N NAI . . . H 3 154.196 197.887 198.582 1 178.31 ? H5N NAI 902 A 1 
HETATM 71 H H6N NAI . . . H 3 152.564 197.619 200.4 1 178.31 ? H6N NAI 902 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    56 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           71 
#