data_6TR1 # _model_server_result.job_id rg2aIYD7v20TNoi0rjCJ5Q _model_server_result.datetime_utc '2024-10-19 19:51:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tr1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":101}' # _entry.id 6TR1 # _exptl.entry_id 6TR1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6TR1 _cell.length_a 94.8 _cell.length_b 94.8 _cell.length_c 160.22 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TR1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,L 1 1 B,F,G,H,I,J,M 2 1 C,K,N 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 14 A CYS 14 1_555 D CAB HEC . A HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? covale ? covale2 A SG CYS 17 A CYS 17 1_555 D CAC HEC . A HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? covale ? covale3 B SG CYS 14 C CYS 14 1_555 F CAB HEC . C HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? covale ? covale4 B C GLN 71 C GLN 71 1_555 B N MEN 72 C MEN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale5 B C MEN 72 C MEN 72 1_555 B N VAL 73 C VAL 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale6 C SG CYS 14 E CYS 14 1_555 K CAB HEC . E HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.879 ? covale ? covale7 C SG CYS 17 E CYS 17 1_555 K CAC HEC . E HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc1 A O ALA 4 A ALA 4 1_555 H NA NA . C NA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc2 A NE2 HIS 18 A HIS 18 1_555 D FE HEC . A HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc3 A OE1 GLU 44 A GLU 44 1_555 E NA NA . A NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc4 A SD MET 58 A MET 58 1_555 D FE HEC . A HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc5 E NA NA . A NA 102 1_555 L O HOH . A HOH 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.899 ? metalc ? metalc6 B OD1 ASN 13 C ASN 13 1_555 G NA NA . C NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc7 B NE2 HIS 18 C HIS 18 1_555 F FE HEC . C HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc8 B OE2 GLU 37 C GLU 37 1_555 H NA NA . C NA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc9 B SD MET 58 C MET 58 1_555 F FE HEC . C HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc10 G NA NA . C NA 102 1_555 M O HOH . C HOH 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.031 ? metalc ? metalc11 C NE2 HIS 18 E HIS 18 1_555 K FE HEC . E HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc12 C SD MET 58 E MET 58 1_555 K FE HEC . E HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 129 n n FE NB HEC sing 130 n n FE NC HEC sing 131 n n FE ND HEC sing 132 n n CHA C1A HEC doub 133 n n CHA C4D HEC sing 134 n n CHA HHA HEC sing 135 n n CHB C4A HEC doub 136 n n CHB C1B HEC sing 137 n n CHB HHB HEC sing 138 n n CHC C4B HEC doub 139 n n CHC C1C HEC sing 140 n n CHC HHC HEC sing 141 n n CHD C4C HEC doub 142 n n CHD C1D HEC sing 143 n n CHD HHD HEC sing 144 n n NA C1A HEC sing 145 n y NA C4A HEC sing 146 n y C1A C2A HEC sing 147 n y C2A C3A HEC doub 148 n y C2A CAA HEC sing 149 n n C3A C4A HEC sing 150 n y C3A CMA HEC sing 151 n n CMA HMA1 HEC sing 152 n n CMA HMA2 HEC sing 153 n n CMA HMA3 HEC sing 154 n n CAA CBA HEC sing 155 n n CAA HAA1 HEC sing 156 n n CAA HAA2 HEC sing 157 n n CBA CGA HEC sing 158 n n CBA HBA1 HEC sing 159 n n CBA HBA2 HEC sing 160 n n CGA O1A HEC doub 161 n n CGA O2A HEC sing 162 n n O2A H2A HEC sing 163 n n NB C1B HEC sing 164 n y NB C4B HEC sing 165 n y C1B C2B HEC doub 166 n y C2B C3B HEC sing 167 n y C2B CMB HEC sing 168 n n C3B C4B HEC sing 169 n y C3B CAB HEC doub 170 e n CMB HMB1 HEC sing 171 n n CMB HMB2 HEC sing 172 n n CMB HMB3 HEC sing 173 n n CAB CBB HEC sing 174 n n CAB HAB HEC sing 175 n n CBB HBB1 HEC sing 176 n n CBB HBB2 HEC sing 177 n n CBB HBB3 HEC sing 178 n n NC C1C HEC sing 179 n y NC C4C HEC sing 180 n y C1C C2C HEC doub 181 n y C2C C3C HEC sing 182 n y C2C CMC HEC sing 183 n n C3C C4C HEC sing 184 n y C3C CAC HEC doub 185 e n CMC HMC1 HEC sing 186 n n CMC HMC2 HEC sing 187 n n CMC HMC3 HEC sing 188 n n CAC CBC HEC sing 189 n n CAC HAC HEC sing 190 n n CBC HBC1 HEC sing 191 n n CBC HBC2 HEC sing 192 n n CBC HBC3 HEC sing 193 n n ND C1D HEC sing 194 n y ND C4D HEC sing 195 n y C1D C2D HEC doub 196 n y C2D C3D HEC sing 197 n y C2D CMD HEC sing 198 n n C3D C4D HEC doub 199 n y C3D CAD HEC sing 200 n n CMD HMD1 HEC sing 201 n n CMD HMD2 HEC sing 202 n n CMD HMD3 HEC sing 203 n n CAD CBD HEC sing 204 n n CAD HAD1 HEC sing 205 n n CAD HAD2 HEC sing 206 n n CBD CGD HEC sing 207 n n CBD HBD1 HEC sing 208 n n CBD HBD2 HEC sing 209 n n CGD O1D HEC doub 210 n n CGD O2D HEC sing 211 n n O2D H2D HEC sing 212 n n # _atom_sites.entry_id 6TR1 _atom_sites.fract_transf_matrix[1][1] 0.010549 _atom_sites.fract_transf_matrix[1][2] 0.00609 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01218 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006241 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 HEC A 1 101 93 HEC HEM . E 5 NA A 1 102 2 NA NA . F 4 HEC C 1 101 93 HEC HEM . G 5 NA C 1 102 1 NA NA . H 5 NA C 1 103 3 NA NA . I 5 NA C 1 104 5 NA NA . J 5 NA C 1 105 6 NA NA . K 4 HEC E 1 101 93 HEC HEM . L 6 HOH A 1 201 75 HOH HOH . L 6 HOH A 2 202 37 HOH HOH . L 6 HOH A 3 203 58 HOH HOH . L 6 HOH A 4 204 19 HOH HOH . L 6 HOH A 5 205 36 HOH HOH . L 6 HOH A 6 206 9 HOH HOH . L 6 HOH A 7 207 27 HOH HOH . L 6 HOH A 8 208 38 HOH HOH . L 6 HOH A 9 209 74 HOH HOH . L 6 HOH A 10 210 66 HOH HOH . L 6 HOH A 11 211 10 HOH HOH . L 6 HOH A 12 212 8 HOH HOH . L 6 HOH A 13 213 39 HOH HOH . L 6 HOH A 14 214 72 HOH HOH . L 6 HOH A 15 215 31 HOH HOH . L 6 HOH A 16 216 35 HOH HOH . L 6 HOH A 17 217 25 HOH HOH . L 6 HOH A 18 218 28 HOH HOH . L 6 HOH A 19 219 7 HOH HOH . L 6 HOH A 20 220 40 HOH HOH . L 6 HOH A 21 221 41 HOH HOH . L 6 HOH A 22 222 17 HOH HOH . L 6 HOH A 23 223 47 HOH HOH . L 6 HOH A 24 224 64 HOH HOH . L 6 HOH A 25 225 70 HOH HOH . M 6 HOH C 1 201 52 HOH HOH . M 6 HOH C 2 202 3 HOH HOH . M 6 HOH C 3 203 50 HOH HOH . M 6 HOH C 4 204 67 HOH HOH . M 6 HOH C 5 205 53 HOH HOH . M 6 HOH C 6 206 42 HOH HOH . M 6 HOH C 7 207 49 HOH HOH . M 6 HOH C 8 208 55 HOH HOH . M 6 HOH C 9 209 68 HOH HOH . M 6 HOH C 10 210 34 HOH HOH . M 6 HOH C 11 211 65 HOH HOH . M 6 HOH C 12 212 76 HOH HOH . M 6 HOH C 13 213 21 HOH HOH . N 6 HOH E 1 201 33 HOH HOH . N 6 HOH E 2 202 56 HOH HOH . N 6 HOH E 3 203 63 HOH HOH . N 6 HOH E 4 204 48 HOH HOH . N 6 HOH E 5 205 32 HOH HOH . N 6 HOH E 6 206 6 HOH HOH . N 6 HOH E 7 207 61 HOH HOH . N 6 HOH E 8 208 5 HOH HOH . N 6 HOH E 9 209 24 HOH HOH . N 6 HOH E 10 210 11 HOH HOH . N 6 HOH E 11 211 23 HOH HOH . N 6 HOH E 12 212 13 HOH HOH . N 6 HOH E 13 213 71 HOH HOH . N 6 HOH E 14 214 62 HOH HOH . N 6 HOH E 15 215 51 HOH HOH . N 6 HOH E 16 216 59 HOH HOH . N 6 HOH E 17 217 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . D 4 -40.883 13.957 4.193 1 15.96 ? FE HEC 101 A 1 HETATM 2 C CHA HEC . . . D 4 -43.235 16.281 3.913 1 13.62 ? CHA HEC 101 A 1 HETATM 3 C CHB HEC . . . D 4 -41.802 12.674 1.125 1 13.48 ? CHB HEC 101 A 1 HETATM 4 C CHC HEC . . . D 4 -38.204 12.016 4.277 1 13.31 ? CHC HEC 101 A 1 HETATM 5 C CHD HEC . . . D 4 -40.283 14.879 7.379 1 13.7 ? CHD HEC 101 A 1 HETATM 6 N NA HEC . . . D 4 -42.267 14.403 2.763 1 12.75 ? NA HEC 101 A 1 HETATM 7 C C1A HEC . . . D 4 -43.094 15.441 2.855 1 13.16 ? C1A HEC 101 A 1 HETATM 8 C C2A HEC . . . D 4 -43.984 15.362 1.715 1 15 ? C2A HEC 101 A 1 HETATM 9 C C3A HEC . . . D 4 -43.601 14.362 0.924 1 17.16 ? C3A HEC 101 A 1 HETATM 10 C C4A HEC . . . D 4 -42.477 13.79 1.578 1 13.46 ? C4A HEC 101 A 1 HETATM 11 C CMA HEC . . . D 4 -44.199 13.9 -0.315 1 17.67 ? CMA HEC 101 A 1 HETATM 12 C CAA HEC . . . D 4 -45.184 16.294 1.469 1 15.68 ? CAA HEC 101 A 1 HETATM 13 C CBA HEC . . . D 4 -46.438 15.821 2.154 1 17.6 ? CBA HEC 101 A 1 HETATM 14 C CGA HEC . . . D 4 -47.696 16.589 2.077 1 17.65 ? CGA HEC 101 A 1 HETATM 15 O O1A HEC . . . D 4 -48.757 16.049 2.608 1 21.54 ? O1A HEC 101 A 1 HETATM 16 O O2A HEC . . . D 4 -47.694 17.647 1.571 1 20.23 ? O2A HEC 101 A 1 HETATM 17 N NB HEC . . . D 4 -40.081 12.526 2.86 1 14.96 ? NB HEC 101 A 1 HETATM 18 C C1B HEC . . . D 4 -40.604 12.076 1.694 1 12.88 ? C1B HEC 101 A 1 HETATM 19 C C2B HEC . . . D 4 -39.681 11.184 1.068 1 14.55 ? C2B HEC 101 A 1 HETATM 20 C C3B HEC . . . D 4 -38.677 10.898 1.968 1 14.96 ? C3B HEC 101 A 1 HETATM 21 C C4B HEC . . . D 4 -38.973 11.831 3.05 1 13.01 ? C4B HEC 101 A 1 HETATM 22 C CMB HEC . . . D 4 -39.995 10.42 -0.161 1 14.51 ? CMB HEC 101 A 1 HETATM 23 C CAB HEC . . . D 4 -37.43 10.154 1.888 1 16.31 ? CAB HEC 101 A 1 HETATM 24 C CBB HEC . . . D 4 -36.607 10.236 0.803 1 16.71 ? CBB HEC 101 A 1 HETATM 25 N NC HEC . . . D 4 -39.447 13.481 5.62 1 14.05 ? NC HEC 101 A 1 HETATM 26 C C1C HEC . . . D 4 -38.434 12.669 5.422 1 13.14 ? C1C HEC 101 A 1 HETATM 27 C C2C HEC . . . D 4 -37.815 12.417 6.726 1 15.01 ? C2C HEC 101 A 1 HETATM 28 C C3C HEC . . . D 4 -38.485 13.171 7.644 1 15.07 ? C3C HEC 101 A 1 HETATM 29 C C4C HEC . . . D 4 -39.479 13.894 6.902 1 14.19 ? C4C HEC 101 A 1 HETATM 30 C CMC HEC . . . D 4 -36.677 11.409 7.036 1 16.15 ? CMC HEC 101 A 1 HETATM 31 C CAC HEC . . . D 4 -38.147 13.394 9.087 1 15.44 ? CAC HEC 101 A 1 HETATM 32 C CBC HEC . . . D 4 -36.76 13.644 9.393 1 16.05 ? CBC HEC 101 A 1 HETATM 33 N ND HEC . . . D 4 -41.596 15.303 5.406 1 14.06 ? ND HEC 101 A 1 HETATM 34 C C1D HEC . . . D 4 -41.27 15.61 6.697 1 14.75 ? C1D HEC 101 A 1 HETATM 35 C C2D HEC . . . D 4 -41.921 16.788 7.259 1 15 ? C2D HEC 101 A 1 HETATM 36 C C3D HEC . . . D 4 -42.717 17.269 6.213 1 17.97 ? C3D HEC 101 A 1 HETATM 37 C C4D HEC . . . D 4 -42.563 16.273 5.135 1 13.57 ? C4D HEC 101 A 1 HETATM 38 C CMD HEC . . . D 4 -41.8 17.384 8.612 1 18.2 ? CMD HEC 101 A 1 HETATM 39 C CAD HEC . . . D 4 -43.592 18.453 6.368 1 16.13 ? CAD HEC 101 A 1 HETATM 40 C CBD HEC . . . D 4 -42.659 19.671 5.794 1 19.05 ? CBD HEC 101 A 1 HETATM 41 C CGD HEC . . . D 4 -43.295 21.053 5.791 1 20.33 ? CGD HEC 101 A 1 HETATM 42 O O1D HEC . . . D 4 -44.213 21.25 4.985 1 23.62 ? O1D HEC 101 A 1 HETATM 43 O O2D HEC . . . D 4 -43.051 21.923 6.67 1 19.01 ? O2D HEC 101 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #