data_6TR5 # _model_server_result.job_id 67ILaUXVw33jozmNzTG3CQ _model_server_result.datetime_utc '2024-11-07 07:33:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tr5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 6TR5 # _exptl.entry_id 6TR5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 232.278 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[2-(5-methoxy-1H-indol-3-yl)ethyl]acetamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TR5 _cell.length_a 60.259 _cell.length_b 73.165 _cell.length_c 79.001 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TR5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf3 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf4 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf5 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 E C1 NAG . A NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? # _chem_comp.formula 'C13 H16 N2 O2' _chem_comp.formula_weight 232.278 _chem_comp.id ML1 _chem_comp.mon_nstd_flag . _chem_comp.name N-[2-(5-methoxy-1H-indol-3-yl)ethyl]acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Melatonin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C6 ML1 sing 246 n n C1 N1 ML1 sing 247 n n C1 H11 ML1 sing 248 n n C1 H12A ML1 sing 249 n n C2 C7 ML1 doub 250 n y C2 H2 ML1 sing 251 n n C3 H31 ML1 sing 252 n n C3 H32 ML1 sing 253 n n C3 H33 ML1 sing 254 n n C4 N1 ML1 sing 255 n n C5 C4 ML1 sing 256 n n C5 H51 ML1 sing 257 n n C5 H52 ML1 sing 258 n n C5 H53 ML1 sing 259 n n C6 H61 ML1 sing 260 n n C6 H62 ML1 sing 261 n n C8 C9 ML1 sing 262 n y C8 C7 ML1 sing 263 n y C9 H9 ML1 sing 264 n n C12 C11 ML1 doub 265 n y C12 C13 ML1 sing 266 n y C12 H12 ML1 sing 267 n n C13 C8 ML1 doub 268 n y C7 C6 ML1 sing 269 n n C10 O1 ML1 sing 270 n n C10 C9 ML1 doub 271 n y C11 C10 ML1 sing 272 n y C11 H111 ML1 sing 273 n n N1 HN1 ML1 sing 274 n n N2 C13 ML1 sing 275 n y N2 C2 ML1 sing 276 n y O1 C3 ML1 sing 277 n n O2 C4 ML1 doub 278 n n N2 H16 ML1 sing 279 n n # _atom_sites.entry_id 6TR5 _atom_sites.fract_transf_matrix[1][1] 0.016595 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013668 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012658 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ML1 A 1 501 501 ML1 ML1 . C 2 ML1 A 1 502 502 ML1 ML1 . D 3 DMS A 1 503 503 DMS DMS . E 4 NAG A 1 504 504 NAG NAG . F 5 SO4 A 1 505 505 SO4 SO4 . G 5 SO4 A 1 506 506 SO4 SO4 . H 5 SO4 A 1 507 507 SO4 SO4 . I 5 SO4 A 1 508 508 SO4 SO4 . J 5 SO4 A 1 509 509 SO4 SO4 . K 5 SO4 A 1 510 510 SO4 SO4 . L 5 SO4 A 1 511 511 SO4 SO4 . M 5 SO4 A 1 512 512 SO4 SO4 . N 6 HOH A 1 601 527 HOH HOH . N 6 HOH A 2 602 554 HOH HOH . N 6 HOH A 3 603 681 HOH HOH . N 6 HOH A 4 604 552 HOH HOH . N 6 HOH A 5 605 546 HOH HOH . N 6 HOH A 6 606 721 HOH HOH . N 6 HOH A 7 607 723 HOH HOH . N 6 HOH A 8 608 735 HOH HOH . N 6 HOH A 9 609 595 HOH HOH . N 6 HOH A 10 610 709 HOH HOH . N 6 HOH A 11 611 728 HOH HOH . N 6 HOH A 12 612 722 HOH HOH . N 6 HOH A 13 613 642 HOH HOH . N 6 HOH A 14 614 526 HOH HOH . N 6 HOH A 15 615 520 HOH HOH . N 6 HOH A 16 616 522 HOH HOH . N 6 HOH A 17 617 523 HOH HOH . N 6 HOH A 18 618 731 HOH HOH . N 6 HOH A 19 619 550 HOH HOH . N 6 HOH A 20 620 589 HOH HOH . N 6 HOH A 21 621 555 HOH HOH . N 6 HOH A 22 622 566 HOH HOH . N 6 HOH A 23 623 587 HOH HOH . N 6 HOH A 24 624 601 HOH HOH . N 6 HOH A 25 625 724 HOH HOH . N 6 HOH A 26 626 715 HOH HOH . N 6 HOH A 27 627 730 HOH HOH . N 6 HOH A 28 628 559 HOH HOH . N 6 HOH A 29 629 610 HOH HOH . N 6 HOH A 30 630 592 HOH HOH . N 6 HOH A 31 631 562 HOH HOH . N 6 HOH A 32 632 569 HOH HOH . N 6 HOH A 33 633 667 HOH HOH . N 6 HOH A 34 634 565 HOH HOH . N 6 HOH A 35 635 538 HOH HOH . N 6 HOH A 36 636 564 HOH HOH . N 6 HOH A 37 637 583 HOH HOH . N 6 HOH A 38 638 716 HOH HOH . N 6 HOH A 39 639 643 HOH HOH . N 6 HOH A 40 640 594 HOH HOH . N 6 HOH A 41 641 543 HOH HOH . N 6 HOH A 42 642 535 HOH HOH . N 6 HOH A 43 643 578 HOH HOH . N 6 HOH A 44 644 567 HOH HOH . N 6 HOH A 45 645 573 HOH HOH . N 6 HOH A 46 646 577 HOH HOH . N 6 HOH A 47 647 639 HOH HOH . N 6 HOH A 48 648 732 HOH HOH . N 6 HOH A 49 649 571 HOH HOH . N 6 HOH A 50 650 678 HOH HOH . N 6 HOH A 51 651 548 HOH HOH . N 6 HOH A 52 652 604 HOH HOH . N 6 HOH A 53 653 733 HOH HOH . N 6 HOH A 54 654 570 HOH HOH . N 6 HOH A 55 655 666 HOH HOH . N 6 HOH A 56 656 531 HOH HOH . N 6 HOH A 57 657 521 HOH HOH . N 6 HOH A 58 658 584 HOH HOH . N 6 HOH A 59 659 712 HOH HOH . N 6 HOH A 60 660 534 HOH HOH . N 6 HOH A 61 661 591 HOH HOH . N 6 HOH A 62 662 556 HOH HOH . N 6 HOH A 63 663 585 HOH HOH . N 6 HOH A 64 664 536 HOH HOH . N 6 HOH A 65 665 525 HOH HOH . N 6 HOH A 66 666 539 HOH HOH . N 6 HOH A 67 667 590 HOH HOH . N 6 HOH A 68 668 533 HOH HOH . N 6 HOH A 69 669 669 HOH HOH . N 6 HOH A 70 670 532 HOH HOH . N 6 HOH A 71 671 582 HOH HOH . N 6 HOH A 72 672 586 HOH HOH . N 6 HOH A 73 673 530 HOH HOH . N 6 HOH A 74 674 524 HOH HOH . N 6 HOH A 75 675 593 HOH HOH . N 6 HOH A 76 676 529 HOH HOH . N 6 HOH A 77 677 560 HOH HOH . N 6 HOH A 78 678 557 HOH HOH . N 6 HOH A 79 679 734 HOH HOH . N 6 HOH A 80 680 597 HOH HOH . N 6 HOH A 81 681 542 HOH HOH . N 6 HOH A 82 682 549 HOH HOH . N 6 HOH A 83 683 545 HOH HOH . N 6 HOH A 84 684 671 HOH HOH . N 6 HOH A 85 685 625 HOH HOH . N 6 HOH A 86 686 661 HOH HOH . N 6 HOH A 87 687 558 HOH HOH . N 6 HOH A 88 688 611 HOH HOH . N 6 HOH A 89 689 600 HOH HOH . N 6 HOH A 90 690 561 HOH HOH . N 6 HOH A 91 691 599 HOH HOH . N 6 HOH A 92 692 602 HOH HOH . N 6 HOH A 93 693 528 HOH HOH . N 6 HOH A 94 694 644 HOH HOH . N 6 HOH A 95 695 617 HOH HOH . N 6 HOH A 96 696 718 HOH HOH . N 6 HOH A 97 697 719 HOH HOH . N 6 HOH A 98 698 692 HOH HOH . N 6 HOH A 99 699 659 HOH HOH . N 6 HOH A 100 700 621 HOH HOH . N 6 HOH A 101 701 596 HOH HOH . N 6 HOH A 102 702 725 HOH HOH . N 6 HOH A 103 703 615 HOH HOH . N 6 HOH A 104 704 717 HOH HOH . N 6 HOH A 105 705 568 HOH HOH . N 6 HOH A 106 706 652 HOH HOH . N 6 HOH A 107 707 598 HOH HOH . N 6 HOH A 108 708 711 HOH HOH . N 6 HOH A 109 709 674 HOH HOH . N 6 HOH A 110 710 648 HOH HOH . N 6 HOH A 111 711 658 HOH HOH . N 6 HOH A 112 712 655 HOH HOH . N 6 HOH A 113 713 729 HOH HOH . N 6 HOH A 114 714 672 HOH HOH . N 6 HOH A 115 715 631 HOH HOH . N 6 HOH A 116 716 656 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ML1 . . . C 2 0.095 -8.445 6.831 1 42.04 ? C1 ML1 502 A 1 HETATM 2 C C2 ML1 . . . C 2 -0.979 -6.01 4.677 1 32.74 ? C2 ML1 502 A 1 HETATM 3 C C3 ML1 . . . C 2 5.348 -4.391 6.196 1 45.1 ? C3 ML1 502 A 1 HETATM 4 C C4 ML1 . . . C 2 2.487 -8.112 7.574 1 39.73 ? C4 ML1 502 A 1 HETATM 5 C C5 ML1 . . . C 2 3.975 -8.094 7.237 1 40.33 ? C5 ML1 502 A 1 HETATM 6 C C6 ML1 . . . C 2 -0.457 -7.032 7.024 1 40.18 ? C6 ML1 502 A 1 HETATM 7 C C8 ML1 . . . C 2 0.946 -5.297 5.632 1 38.25 ? C8 ML1 502 A 1 HETATM 8 C C9 ML1 . . . C 2 2.092 -5.001 6.412 1 41.78 ? C9 ML1 502 A 1 HETATM 9 C C12 ML1 . . . C 2 1.756 -3.786 3.932 1 36.85 ? C12 ML1 502 A 1 HETATM 10 C C13 ML1 . . . C 2 0.778 -4.701 4.411 1 36.28 ? C13 ML1 502 A 1 HETATM 11 C C7 ML1 . . . C 2 -0.182 -6.147 5.812 1 36.89 ? C7 ML1 502 A 1 HETATM 12 C C10 ML1 . . . C 2 3.046 -4.101 5.941 1 42.77 ? C10 ML1 502 A 1 HETATM 13 C C11 ML1 . . . C 2 2.878 -3.493 4.696 1 38.26 ? C11 ML1 502 A 1 HETATM 14 N N1 ML1 . . . C 2 1.518 -8.417 6.54 1 40.59 ? N1 ML1 502 A 1 HETATM 15 N N2 ML1 . . . C 2 -0.383 -5.153 3.866 1 34.6 ? N2 ML1 502 A 1 HETATM 16 O O1 ML1 . . . C 2 4.18 -3.814 6.712 1 44.75 ? O1 ML1 502 A 1 HETATM 17 O O2 ML1 . . . C 2 2.128 -7.864 8.677 1 38.97 ? O2 ML1 502 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 17 #