data_6TR6
#
_model_server_result.job_id            WAxxB5umIbiuHcSiJ0nDww 
_model_server_result.datetime_utc      '2024-11-07 10:03:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6tr6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    6TR6 
#
_exptl.entry_id    6TR6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6TR6 
_cell.length_a            59.51 
_cell.length_b            72.73 
_cell.length_c            77.85 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6TR6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf3 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
disulf ? disulf4 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf5 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf6 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 B C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 286 n n 
C1 O1 NAG sing 287 n n 
C1 O5 NAG sing 288 n n 
C1 H1 NAG sing 289 n n 
C2 C3 NAG sing 290 n n 
C2 N2 NAG sing 291 n n 
C2 H2 NAG sing 292 n n 
C3 C4 NAG sing 293 n n 
C3 O3 NAG sing 294 n n 
C3 H3 NAG sing 295 n n 
C4 C5 NAG sing 296 n n 
C4 O4 NAG sing 297 n n 
C4 H4 NAG sing 298 n n 
C5 C6 NAG sing 299 n n 
C5 O5 NAG sing 300 n n 
C5 H5 NAG sing 301 n n 
C6 O6 NAG sing 302 n n 
C6 H61 NAG sing 303 n n 
C6 H62 NAG sing 304 n n 
C7 C8 NAG sing 305 n n 
C7 N2 NAG sing 306 n n 
C7 O7 NAG doub 307 n n 
C8 H81 NAG sing 308 n n 
C8 H82 NAG sing 309 n n 
C8 H83 NAG sing 310 n n 
N2 HN2 NAG sing 311 n n 
O1 HO1 NAG sing 312 n n 
O3 HO3 NAG sing 313 n n 
O4 HO4 NAG sing 314 n n 
O6 HO6 NAG sing 315 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6TR6 
_atom_sites.fract_transf_matrix[1][1]    0.016804 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013749 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012845 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 501 462 NAG NAG . 
C 3 SO4 A 1 502 470 SO4 SO4 . 
D 3 SO4 A 1 503 471 SO4 SO4 . 
E 3 SO4 A 1 504 472 SO4 SO4 . 
F 3 SO4 A 1 505 473 SO4 SO4 . 
G 4 EDO A 1 506 480 EDO EDO . 
H 4 EDO A 1 507 481 EDO EDO . 
I 5 DMS A 1 508 491 DMS DMS . 
J 5 DMS A 1 509 492 DMS DMS . 
K 5 DMS A 1 510 493 DMS DMS . 
L 5 DMS A 1 511 494 DMS DMS . 
M 6 ASE A 1 512 1 ASE LIG . 
N 6 ASE A 1 513 2 ASE LIG . 
O 7 HOH A 1 601 508 HOH HOH . 
O 7 HOH A 2 602 586 HOH HOH . 
O 7 HOH A 3 603 584 HOH HOH . 
O 7 HOH A 4 604 1 HOH HOH . 
O 7 HOH A 5 605 739 HOH HOH . 
O 7 HOH A 6 606 531 HOH HOH . 
O 7 HOH A 7 607 623 HOH HOH . 
O 7 HOH A 8 608 536 HOH HOH . 
O 7 HOH A 9 609 618 HOH HOH . 
O 7 HOH A 10 610 768 HOH HOH . 
O 7 HOH A 11 611 721 HOH HOH . 
O 7 HOH A 12 612 757 HOH HOH . 
O 7 HOH A 13 613 527 HOH HOH . 
O 7 HOH A 14 614 501 HOH HOH . 
O 7 HOH A 15 615 719 HOH HOH . 
O 7 HOH A 16 616 696 HOH HOH . 
O 7 HOH A 17 617 547 HOH HOH . 
O 7 HOH A 18 618 728 HOH HOH . 
O 7 HOH A 19 619 518 HOH HOH . 
O 7 HOH A 20 620 533 HOH HOH . 
O 7 HOH A 21 621 582 HOH HOH . 
O 7 HOH A 22 622 654 HOH HOH . 
O 7 HOH A 23 623 546 HOH HOH . 
O 7 HOH A 24 624 540 HOH HOH . 
O 7 HOH A 25 625 591 HOH HOH . 
O 7 HOH A 26 626 559 HOH HOH . 
O 7 HOH A 27 627 690 HOH HOH . 
O 7 HOH A 28 628 755 HOH HOH . 
O 7 HOH A 29 629 551 HOH HOH . 
O 7 HOH A 30 630 573 HOH HOH . 
O 7 HOH A 31 631 548 HOH HOH . 
O 7 HOH A 32 632 709 HOH HOH . 
O 7 HOH A 33 633 552 HOH HOH . 
O 7 HOH A 34 634 503 HOH HOH . 
O 7 HOH A 35 635 570 HOH HOH . 
O 7 HOH A 36 636 752 HOH HOH . 
O 7 HOH A 37 637 545 HOH HOH . 
O 7 HOH A 38 638 585 HOH HOH . 
O 7 HOH A 39 639 550 HOH HOH . 
O 7 HOH A 40 640 519 HOH HOH . 
O 7 HOH A 41 641 529 HOH HOH . 
O 7 HOH A 42 642 732 HOH HOH . 
O 7 HOH A 43 643 598 HOH HOH . 
O 7 HOH A 44 644 504 HOH HOH . 
O 7 HOH A 45 645 516 HOH HOH . 
O 7 HOH A 46 646 512 HOH HOH . 
O 7 HOH A 47 647 669 HOH HOH . 
O 7 HOH A 48 648 717 HOH HOH . 
O 7 HOH A 49 649 708 HOH HOH . 
O 7 HOH A 50 650 777 HOH HOH . 
O 7 HOH A 51 651 564 HOH HOH . 
O 7 HOH A 52 652 697 HOH HOH . 
O 7 HOH A 53 653 753 HOH HOH . 
O 7 HOH A 54 654 714 HOH HOH . 
O 7 HOH A 55 655 558 HOH HOH . 
O 7 HOH A 56 656 624 HOH HOH . 
O 7 HOH A 57 657 713 HOH HOH . 
O 7 HOH A 58 658 649 HOH HOH . 
O 7 HOH A 59 659 620 HOH HOH . 
O 7 HOH A 60 660 765 HOH HOH . 
O 7 HOH A 61 661 771 HOH HOH . 
O 7 HOH A 62 662 609 HOH HOH . 
O 7 HOH A 63 663 568 HOH HOH . 
O 7 HOH A 64 664 554 HOH HOH . 
O 7 HOH A 65 665 507 HOH HOH . 
O 7 HOH A 66 666 645 HOH HOH . 
O 7 HOH A 67 667 614 HOH HOH . 
O 7 HOH A 68 668 587 HOH HOH . 
O 7 HOH A 69 669 502 HOH HOH . 
O 7 HOH A 70 670 718 HOH HOH . 
O 7 HOH A 71 671 659 HOH HOH . 
O 7 HOH A 72 672 562 HOH HOH . 
O 7 HOH A 73 673 707 HOH HOH . 
O 7 HOH A 74 674 766 HOH HOH . 
O 7 HOH A 75 675 543 HOH HOH . 
O 7 HOH A 76 676 597 HOH HOH . 
O 7 HOH A 77 677 761 HOH HOH . 
O 7 HOH A 78 678 703 HOH HOH . 
O 7 HOH A 79 679 565 HOH HOH . 
O 7 HOH A 80 680 511 HOH HOH . 
O 7 HOH A 81 681 520 HOH HOH . 
O 7 HOH A 82 682 557 HOH HOH . 
O 7 HOH A 83 683 515 HOH HOH . 
O 7 HOH A 84 684 736 HOH HOH . 
O 7 HOH A 85 685 724 HOH HOH . 
O 7 HOH A 86 686 537 HOH HOH . 
O 7 HOH A 87 687 538 HOH HOH . 
O 7 HOH A 88 688 563 HOH HOH . 
O 7 HOH A 89 689 648 HOH HOH . 
O 7 HOH A 90 690 583 HOH HOH . 
O 7 HOH A 91 691 581 HOH HOH . 
O 7 HOH A 92 692 517 HOH HOH . 
O 7 HOH A 93 693 523 HOH HOH . 
O 7 HOH A 94 694 642 HOH HOH . 
O 7 HOH A 95 695 746 HOH HOH . 
O 7 HOH A 96 696 535 HOH HOH . 
O 7 HOH A 97 697 722 HOH HOH . 
O 7 HOH A 98 698 526 HOH HOH . 
O 7 HOH A 99 699 505 HOH HOH . 
O 7 HOH A 100 700 700 HOH HOH . 
O 7 HOH A 101 701 514 HOH HOH . 
O 7 HOH A 102 702 530 HOH HOH . 
O 7 HOH A 103 703 578 HOH HOH . 
O 7 HOH A 104 704 541 HOH HOH . 
O 7 HOH A 105 705 744 HOH HOH . 
O 7 HOH A 106 706 567 HOH HOH . 
O 7 HOH A 107 707 730 HOH HOH . 
O 7 HOH A 108 708 712 HOH HOH . 
O 7 HOH A 109 709 571 HOH HOH . 
O 7 HOH A 110 710 539 HOH HOH . 
O 7 HOH A 111 711 698 HOH HOH . 
O 7 HOH A 112 712 513 HOH HOH . 
O 7 HOH A 113 713 606 HOH HOH . 
O 7 HOH A 114 714 593 HOH HOH . 
O 7 HOH A 115 715 613 HOH HOH . 
O 7 HOH A 116 716 506 HOH HOH . 
O 7 HOH A 117 717 640 HOH HOH . 
O 7 HOH A 118 718 726 HOH HOH . 
O 7 HOH A 119 719 577 HOH HOH . 
O 7 HOH A 120 720 574 HOH HOH . 
O 7 HOH A 121 721 699 HOH HOH . 
O 7 HOH A 122 722 2 HOH HOH . 
O 7 HOH A 123 723 580 HOH HOH . 
O 7 HOH A 124 724 778 HOH HOH . 
O 7 HOH A 125 725 756 HOH HOH . 
O 7 HOH A 126 726 510 HOH HOH . 
O 7 HOH A 127 727 522 HOH HOH . 
O 7 HOH A 128 728 779 HOH HOH . 
O 7 HOH A 129 729 780 HOH HOH . 
O 7 HOH A 130 730 579 HOH HOH . 
O 7 HOH A 131 731 542 HOH HOH . 
O 7 HOH A 132 732 615 HOH HOH . 
O 7 HOH A 133 733 691 HOH HOH . 
O 7 HOH A 134 734 769 HOH HOH . 
O 7 HOH A 135 735 710 HOH HOH . 
O 7 HOH A 136 736 632 HOH HOH . 
O 7 HOH A 137 737 680 HOH HOH . 
O 7 HOH A 138 738 773 HOH HOH . 
O 7 HOH A 139 739 662 HOH HOH . 
O 7 HOH A 140 740 701 HOH HOH . 
O 7 HOH A 141 741 772 HOH HOH . 
O 7 HOH A 142 742 770 HOH HOH . 
O 7 HOH A 143 743 774 HOH HOH . 
O 7 HOH A 144 744 641 HOH HOH . 
O 7 HOH A 145 745 763 HOH HOH . 
O 7 HOH A 146 746 556 HOH HOH . 
O 7 HOH A 147 747 738 HOH HOH . 
O 7 HOH A 148 748 653 HOH HOH . 
O 7 HOH A 149 749 655 HOH HOH . 
O 7 HOH A 150 750 612 HOH HOH . 
O 7 HOH A 151 751 652 HOH HOH . 
O 7 HOH A 152 752 729 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . B 2 -4.071 21.247 -1.036 1 44.18 ? C1 NAG 501 A 1 
HETATM 2 C C2 NAG . . . B 2 -5.121 21.957 -1.895 1 56.92 ? C2 NAG 501 A 1 
HETATM 3 C C3 NAG . . . B 2 -6.514 21.802 -1.286 1 63.06 ? C3 NAG 501 A 1 
HETATM 4 C C4 NAG . . . B 2 -6.819 20.346 -0.962 1 63.75 ? C4 NAG 501 A 1 
HETATM 5 C C5 NAG . . . B 2 -5.696 19.741 -0.131 1 59.97 ? C5 NAG 501 A 1 
HETATM 6 C C6 NAG . . . B 2 -5.873 18.26 0.117 1 62.3 ? C6 NAG 501 A 1 
HETATM 7 C C7 NAG . . . B 2 -4.552 23.942 -3.227 1 69.79 ? C7 NAG 501 A 1 
HETATM 8 C C8 NAG . . . B 2 -4.231 25.407 -3.189 1 72.1 ? C8 NAG 501 A 1 
HETATM 9 N N2 NAG . . . B 2 -4.792 23.365 -2.046 1 61.91 ? N2 NAG 501 A 1 
HETATM 10 O O3 NAG . . . B 2 -7.468 22.292 -2.22 1 68.07 ? O3 NAG 501 A 1 
HETATM 11 O O4 NAG . . . B 2 -8.034 20.264 -0.225 1 65.8 ? O4 NAG 501 A 1 
HETATM 12 O O5 NAG . . . B 2 -4.454 19.895 -0.829 1 52.77 ? O5 NAG 501 A 1 
HETATM 13 O O6 NAG . . . B 2 -5.759 17.511 -1.086 1 61.32 ? O6 NAG 501 A 1 
HETATM 14 O O7 NAG . . . B 2 -4.591 23.312 -4.279 1 71.84 ? O7 NAG 501 A 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           232 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#