data_6TR6 # _model_server_result.job_id N00LlzJpgYkZOPrIPGNSng _model_server_result.datetime_utc '2024-11-28 09:12:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tr6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":509}' # _entry.id 6TR6 # _exptl.entry_id 6TR6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TR6 _cell.length_a 59.51 _cell.length_b 72.73 _cell.length_c 77.85 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TR6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf3 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf4 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf5 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 B C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 114 n n S C1 DMS sing 115 n n S C2 DMS sing 116 n n C1 H11 DMS sing 117 n n C1 H12 DMS sing 118 n n C1 H13 DMS sing 119 n n C2 H21 DMS sing 120 n n C2 H22 DMS sing 121 n n C2 H23 DMS sing 122 n n # _atom_sites.entry_id 6TR6 _atom_sites.fract_transf_matrix[1][1] 0.016804 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013749 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012845 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 501 462 NAG NAG . C 3 SO4 A 1 502 470 SO4 SO4 . D 3 SO4 A 1 503 471 SO4 SO4 . E 3 SO4 A 1 504 472 SO4 SO4 . F 3 SO4 A 1 505 473 SO4 SO4 . G 4 EDO A 1 506 480 EDO EDO . H 4 EDO A 1 507 481 EDO EDO . I 5 DMS A 1 508 491 DMS DMS . J 5 DMS A 1 509 492 DMS DMS . K 5 DMS A 1 510 493 DMS DMS . L 5 DMS A 1 511 494 DMS DMS . M 6 ASE A 1 512 1 ASE LIG . N 6 ASE A 1 513 2 ASE LIG . O 7 HOH A 1 601 508 HOH HOH . O 7 HOH A 2 602 586 HOH HOH . O 7 HOH A 3 603 584 HOH HOH . O 7 HOH A 4 604 1 HOH HOH . O 7 HOH A 5 605 739 HOH HOH . O 7 HOH A 6 606 531 HOH HOH . O 7 HOH A 7 607 623 HOH HOH . O 7 HOH A 8 608 536 HOH HOH . O 7 HOH A 9 609 618 HOH HOH . O 7 HOH A 10 610 768 HOH HOH . O 7 HOH A 11 611 721 HOH HOH . O 7 HOH A 12 612 757 HOH HOH . O 7 HOH A 13 613 527 HOH HOH . O 7 HOH A 14 614 501 HOH HOH . O 7 HOH A 15 615 719 HOH HOH . O 7 HOH A 16 616 696 HOH HOH . O 7 HOH A 17 617 547 HOH HOH . O 7 HOH A 18 618 728 HOH HOH . O 7 HOH A 19 619 518 HOH HOH . O 7 HOH A 20 620 533 HOH HOH . O 7 HOH A 21 621 582 HOH HOH . O 7 HOH A 22 622 654 HOH HOH . O 7 HOH A 23 623 546 HOH HOH . O 7 HOH A 24 624 540 HOH HOH . O 7 HOH A 25 625 591 HOH HOH . O 7 HOH A 26 626 559 HOH HOH . O 7 HOH A 27 627 690 HOH HOH . O 7 HOH A 28 628 755 HOH HOH . O 7 HOH A 29 629 551 HOH HOH . O 7 HOH A 30 630 573 HOH HOH . O 7 HOH A 31 631 548 HOH HOH . O 7 HOH A 32 632 709 HOH HOH . O 7 HOH A 33 633 552 HOH HOH . O 7 HOH A 34 634 503 HOH HOH . O 7 HOH A 35 635 570 HOH HOH . O 7 HOH A 36 636 752 HOH HOH . O 7 HOH A 37 637 545 HOH HOH . O 7 HOH A 38 638 585 HOH HOH . O 7 HOH A 39 639 550 HOH HOH . O 7 HOH A 40 640 519 HOH HOH . O 7 HOH A 41 641 529 HOH HOH . O 7 HOH A 42 642 732 HOH HOH . O 7 HOH A 43 643 598 HOH HOH . O 7 HOH A 44 644 504 HOH HOH . O 7 HOH A 45 645 516 HOH HOH . O 7 HOH A 46 646 512 HOH HOH . O 7 HOH A 47 647 669 HOH HOH . O 7 HOH A 48 648 717 HOH HOH . O 7 HOH A 49 649 708 HOH HOH . O 7 HOH A 50 650 777 HOH HOH . O 7 HOH A 51 651 564 HOH HOH . O 7 HOH A 52 652 697 HOH HOH . O 7 HOH A 53 653 753 HOH HOH . O 7 HOH A 54 654 714 HOH HOH . O 7 HOH A 55 655 558 HOH HOH . O 7 HOH A 56 656 624 HOH HOH . O 7 HOH A 57 657 713 HOH HOH . O 7 HOH A 58 658 649 HOH HOH . O 7 HOH A 59 659 620 HOH HOH . O 7 HOH A 60 660 765 HOH HOH . O 7 HOH A 61 661 771 HOH HOH . O 7 HOH A 62 662 609 HOH HOH . O 7 HOH A 63 663 568 HOH HOH . O 7 HOH A 64 664 554 HOH HOH . O 7 HOH A 65 665 507 HOH HOH . O 7 HOH A 66 666 645 HOH HOH . O 7 HOH A 67 667 614 HOH HOH . O 7 HOH A 68 668 587 HOH HOH . O 7 HOH A 69 669 502 HOH HOH . O 7 HOH A 70 670 718 HOH HOH . O 7 HOH A 71 671 659 HOH HOH . O 7 HOH A 72 672 562 HOH HOH . O 7 HOH A 73 673 707 HOH HOH . O 7 HOH A 74 674 766 HOH HOH . O 7 HOH A 75 675 543 HOH HOH . O 7 HOH A 76 676 597 HOH HOH . O 7 HOH A 77 677 761 HOH HOH . O 7 HOH A 78 678 703 HOH HOH . O 7 HOH A 79 679 565 HOH HOH . O 7 HOH A 80 680 511 HOH HOH . O 7 HOH A 81 681 520 HOH HOH . O 7 HOH A 82 682 557 HOH HOH . O 7 HOH A 83 683 515 HOH HOH . O 7 HOH A 84 684 736 HOH HOH . O 7 HOH A 85 685 724 HOH HOH . O 7 HOH A 86 686 537 HOH HOH . O 7 HOH A 87 687 538 HOH HOH . O 7 HOH A 88 688 563 HOH HOH . O 7 HOH A 89 689 648 HOH HOH . O 7 HOH A 90 690 583 HOH HOH . O 7 HOH A 91 691 581 HOH HOH . O 7 HOH A 92 692 517 HOH HOH . O 7 HOH A 93 693 523 HOH HOH . O 7 HOH A 94 694 642 HOH HOH . O 7 HOH A 95 695 746 HOH HOH . O 7 HOH A 96 696 535 HOH HOH . O 7 HOH A 97 697 722 HOH HOH . O 7 HOH A 98 698 526 HOH HOH . O 7 HOH A 99 699 505 HOH HOH . O 7 HOH A 100 700 700 HOH HOH . O 7 HOH A 101 701 514 HOH HOH . O 7 HOH A 102 702 530 HOH HOH . O 7 HOH A 103 703 578 HOH HOH . O 7 HOH A 104 704 541 HOH HOH . O 7 HOH A 105 705 744 HOH HOH . O 7 HOH A 106 706 567 HOH HOH . O 7 HOH A 107 707 730 HOH HOH . O 7 HOH A 108 708 712 HOH HOH . O 7 HOH A 109 709 571 HOH HOH . O 7 HOH A 110 710 539 HOH HOH . O 7 HOH A 111 711 698 HOH HOH . O 7 HOH A 112 712 513 HOH HOH . O 7 HOH A 113 713 606 HOH HOH . O 7 HOH A 114 714 593 HOH HOH . O 7 HOH A 115 715 613 HOH HOH . O 7 HOH A 116 716 506 HOH HOH . O 7 HOH A 117 717 640 HOH HOH . O 7 HOH A 118 718 726 HOH HOH . O 7 HOH A 119 719 577 HOH HOH . O 7 HOH A 120 720 574 HOH HOH . O 7 HOH A 121 721 699 HOH HOH . O 7 HOH A 122 722 2 HOH HOH . O 7 HOH A 123 723 580 HOH HOH . O 7 HOH A 124 724 778 HOH HOH . O 7 HOH A 125 725 756 HOH HOH . O 7 HOH A 126 726 510 HOH HOH . O 7 HOH A 127 727 522 HOH HOH . O 7 HOH A 128 728 779 HOH HOH . O 7 HOH A 129 729 780 HOH HOH . O 7 HOH A 130 730 579 HOH HOH . O 7 HOH A 131 731 542 HOH HOH . O 7 HOH A 132 732 615 HOH HOH . O 7 HOH A 133 733 691 HOH HOH . O 7 HOH A 134 734 769 HOH HOH . O 7 HOH A 135 735 710 HOH HOH . O 7 HOH A 136 736 632 HOH HOH . O 7 HOH A 137 737 680 HOH HOH . O 7 HOH A 138 738 773 HOH HOH . O 7 HOH A 139 739 662 HOH HOH . O 7 HOH A 140 740 701 HOH HOH . O 7 HOH A 141 741 772 HOH HOH . O 7 HOH A 142 742 770 HOH HOH . O 7 HOH A 143 743 774 HOH HOH . O 7 HOH A 144 744 641 HOH HOH . O 7 HOH A 145 745 763 HOH HOH . O 7 HOH A 146 746 556 HOH HOH . O 7 HOH A 147 747 738 HOH HOH . O 7 HOH A 148 748 653 HOH HOH . O 7 HOH A 149 749 655 HOH HOH . O 7 HOH A 150 750 612 HOH HOH . O 7 HOH A 151 751 652 HOH HOH . O 7 HOH A 152 752 729 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . J 5 15.8 2.2 -20.751 1 29.9 ? S DMS 509 A 1 HETATM 2 O O DMS . . . J 5 15.407 3.383 -19.921 1 26.67 ? O DMS 509 A 1 HETATM 3 C C1 DMS . . . J 5 14.321 1.488 -21.523 1 29.08 ? C1 DMS 509 A 1 HETATM 4 C C2 DMS . . . J 5 16.653 2.792 -22.24 1 31.77 ? C2 DMS 509 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #