data_6TR9 # _model_server_result.job_id sZ0rWMUTtx-7BT-sUaSRVA _model_server_result.datetime_utc '2025-07-03 22:50:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tr9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 6TR9 # _exptl.entry_id 6TR9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TR9 _cell.length_a 151.215 _cell.length_b 151.215 _cell.length_c 151.215 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TR9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 211 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 13 'crystal symmetry operation' 13_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 14 'crystal symmetry operation' 14_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 15 'crystal symmetry operation' 15_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 16 'crystal symmetry operation' 16_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 17 'crystal symmetry operation' 17_555 x,z,-y 1 0 0 0 0 1 0 -1 0 0 0 0 18 'crystal symmetry operation' 18_555 -x,z,y -1 0 0 0 0 1 0 1 0 0 0 0 19 'crystal symmetry operation' 19_555 -x,-z,-y -1 0 0 0 0 -1 0 -1 0 0 0 0 20 'crystal symmetry operation' 20_555 x,-z,y 1 0 0 0 0 -1 0 1 0 0 0 0 21 'crystal symmetry operation' 21_555 z,y,-x 0 0 1 0 1 0 -1 0 0 0 0 0 22 'crystal symmetry operation' 22_555 z,-y,x 0 0 1 0 -1 0 1 0 0 0 0 0 23 'crystal symmetry operation' 23_555 -z,y,x 0 0 -1 0 1 0 1 0 0 0 0 0 24 'crystal symmetry operation' 24_555 -z,-y,-x 0 0 -1 0 -1 0 -1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 12 AAA ASP 15 1_555 E CD CD . AAA CD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc2 A OD1 ASP 12 AAA ASP 15 1_555 E CD CD . AAA CD 204 46_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc3 A OE1 GLU 46 AAA GLU 49 1_555 G CD CD . AAA CD 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc4 A OE2 GLU 87 AAA GLU 90 1_555 H CD CD . AAA CD 207 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.315 ? metalc ? metalc5 A OE2 GLU 131 AAA GLU 134 1_555 C CD CD . AAA CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc6 A OE1 GLU 131 AAA GLU 134 1_555 C CD CD . AAA CD 202 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc7 A OE2 GLU 131 AAA GLU 134 1_555 C CD CD . AAA CD 202 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc8 A NE2 HIS 133 AAA HIS 136 1_555 F CD CD . AAA CD 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc9 B CD CD . AAA CD 201 1_555 I O HOH . AAA HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc10 B CD CD . AAA CD 201 1_555 I O HOH . AAA HOH 305 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc11 B CD CD . AAA CD 201 1_555 I O HOH . AAA HOH 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? metalc ? metalc12 B CD CD . AAA CD 201 1_555 I O HOH . AAA HOH 345 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? metalc ? metalc13 C CD CD . AAA CD 202 1_555 I O HOH . AAA HOH 369 11_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc14 D CD CD . AAA CD 203 1_555 I O HOH . AAA HOH 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc15 D CD CD . AAA CD 203 1_555 I O HOH . AAA HOH 369 11_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc16 E CD CD . AAA CD 204 1_555 I O HOH . AAA HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc17 E CD CD . AAA CD 204 1_555 I O HOH . AAA HOH 301 46_554 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? metalc ? metalc18 F CD CD . AAA CD 205 1_555 I O HOH . AAA HOH 341 11_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc19 H CD CD . AAA CD 207 1_555 I O HOH . AAA HOH 342 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.206 ? metalc ? metalc20 H CD CD . AAA CD 207 1_555 I O HOH . AAA HOH 349 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.683 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6TR9 _atom_sites.fract_transf_matrix[1][1] 0.006613 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006613 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006613 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD AAA 1 201 1 CD CD . C 2 CD AAA 1 202 2 CD CD . D 2 CD AAA 1 203 3 CD CD . E 2 CD AAA 1 204 4 CD CD . F 2 CD AAA 1 205 5 CD CD . G 2 CD AAA 1 206 6 CD CD . H 2 CD AAA 1 207 7 CD CD . I 3 HOH AAA 1 301 63 HOH HOH . I 3 HOH AAA 2 302 96 HOH HOH . I 3 HOH AAA 3 303 9 HOH HOH . I 3 HOH AAA 4 304 25 HOH HOH . I 3 HOH AAA 5 305 120 HOH HOH . I 3 HOH AAA 6 306 68 HOH HOH . I 3 HOH AAA 7 307 49 HOH HOH . I 3 HOH AAA 8 308 29 HOH HOH . I 3 HOH AAA 9 309 56 HOH HOH . I 3 HOH AAA 10 310 34 HOH HOH . I 3 HOH AAA 11 311 72 HOH HOH . I 3 HOH AAA 12 312 33 HOH HOH . I 3 HOH AAA 13 313 30 HOH HOH . I 3 HOH AAA 14 314 31 HOH HOH . I 3 HOH AAA 15 315 59 HOH HOH . I 3 HOH AAA 16 316 14 HOH HOH . I 3 HOH AAA 17 317 46 HOH HOH . I 3 HOH AAA 18 318 45 HOH HOH . I 3 HOH AAA 19 319 62 HOH HOH . I 3 HOH AAA 20 320 27 HOH HOH . I 3 HOH AAA 21 321 81 HOH HOH . I 3 HOH AAA 22 322 80 HOH HOH . I 3 HOH AAA 23 323 4 HOH HOH . I 3 HOH AAA 24 324 22 HOH HOH . I 3 HOH AAA 25 325 65 HOH HOH . I 3 HOH AAA 26 326 38 HOH HOH . I 3 HOH AAA 27 327 28 HOH HOH . I 3 HOH AAA 28 328 55 HOH HOH . I 3 HOH AAA 29 329 110 HOH HOH . I 3 HOH AAA 30 330 16 HOH HOH . I 3 HOH AAA 31 331 13 HOH HOH . I 3 HOH AAA 32 332 26 HOH HOH . I 3 HOH AAA 33 333 36 HOH HOH . I 3 HOH AAA 34 334 54 HOH HOH . I 3 HOH AAA 35 335 39 HOH HOH . I 3 HOH AAA 36 336 2 HOH HOH . I 3 HOH AAA 37 337 89 HOH HOH . I 3 HOH AAA 38 338 61 HOH HOH . I 3 HOH AAA 39 339 91 HOH HOH . I 3 HOH AAA 40 340 92 HOH HOH . I 3 HOH AAA 41 341 112 HOH HOH . I 3 HOH AAA 42 342 108 HOH HOH . I 3 HOH AAA 43 343 24 HOH HOH . I 3 HOH AAA 44 344 66 HOH HOH . I 3 HOH AAA 45 345 119 HOH HOH . I 3 HOH AAA 46 346 11 HOH HOH . I 3 HOH AAA 47 347 19 HOH HOH . I 3 HOH AAA 48 348 74 HOH HOH . I 3 HOH AAA 49 349 76 HOH HOH . I 3 HOH AAA 50 350 12 HOH HOH . I 3 HOH AAA 51 351 52 HOH HOH . I 3 HOH AAA 52 352 17 HOH HOH . I 3 HOH AAA 53 353 114 HOH HOH . I 3 HOH AAA 54 354 60 HOH HOH . I 3 HOH AAA 55 355 88 HOH HOH . I 3 HOH AAA 56 356 3 HOH HOH . I 3 HOH AAA 57 357 48 HOH HOH . I 3 HOH AAA 58 358 73 HOH HOH . I 3 HOH AAA 59 359 70 HOH HOH . I 3 HOH AAA 60 360 10 HOH HOH . I 3 HOH AAA 61 361 32 HOH HOH . I 3 HOH AAA 62 362 97 HOH HOH . I 3 HOH AAA 63 363 99 HOH HOH . I 3 HOH AAA 64 364 1 HOH HOH . I 3 HOH AAA 65 365 44 HOH HOH . I 3 HOH AAA 66 366 101 HOH HOH . I 3 HOH AAA 67 367 8 HOH HOH . I 3 HOH AAA 68 368 67 HOH HOH . I 3 HOH AAA 69 369 121 HOH HOH . I 3 HOH AAA 70 370 93 HOH HOH . I 3 HOH AAA 71 371 75 HOH HOH . I 3 HOH AAA 72 372 64 HOH HOH . I 3 HOH AAA 73 373 123 HOH HOH . I 3 HOH AAA 74 374 57 HOH HOH . I 3 HOH AAA 75 375 69 HOH HOH . I 3 HOH AAA 76 376 20 HOH HOH . I 3 HOH AAA 77 377 23 HOH HOH . I 3 HOH AAA 78 378 79 HOH HOH . I 3 HOH AAA 79 379 47 HOH HOH . I 3 HOH AAA 80 380 103 HOH HOH . I 3 HOH AAA 81 381 82 HOH HOH . I 3 HOH AAA 82 382 111 HOH HOH . I 3 HOH AAA 83 383 84 HOH HOH . I 3 HOH AAA 84 384 15 HOH HOH . I 3 HOH AAA 85 385 100 HOH HOH . I 3 HOH AAA 86 386 85 HOH HOH . I 3 HOH AAA 87 387 37 HOH HOH . I 3 HOH AAA 88 388 102 HOH HOH . I 3 HOH AAA 89 389 122 HOH HOH . I 3 HOH AAA 90 390 116 HOH HOH . I 3 HOH AAA 91 391 109 HOH HOH . I 3 HOH AAA 92 392 71 HOH HOH . I 3 HOH AAA 93 393 7 HOH HOH . I 3 HOH AAA 94 394 98 HOH HOH . I 3 HOH AAA 95 395 51 HOH HOH . I 3 HOH AAA 96 396 90 HOH HOH . I 3 HOH AAA 97 397 21 HOH HOH . I 3 HOH AAA 98 398 78 HOH HOH . I 3 HOH AAA 99 399 87 HOH HOH . I 3 HOH AAA 100 400 42 HOH HOH . I 3 HOH AAA 101 401 104 HOH HOH . I 3 HOH AAA 102 402 18 HOH HOH . I 3 HOH AAA 103 403 86 HOH HOH . I 3 HOH AAA 104 404 118 HOH HOH . I 3 HOH AAA 105 405 117 HOH HOH . I 3 HOH AAA 106 406 105 HOH HOH . I 3 HOH AAA 107 407 35 HOH HOH . I 3 HOH AAA 108 408 6 HOH HOH . I 3 HOH AAA 109 409 83 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 51.03 _atom_site.Cartn_y 37.804 _atom_site.Cartn_z -24.577 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 71.52 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 204 _atom_site.auth_asym_id AAA _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 228 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #