data_6TRQ # _model_server_result.job_id oEpmU-mC1KvjIswD_b_V8w _model_server_result.datetime_utc '2024-11-29 02:30:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6trq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":403}' # _entry.id 6TRQ # _exptl.entry_id 6TRQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "L-GUANOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TRQ _cell.length_a 87.761 _cell.length_b 104.103 _cell.length_c 189.223 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TRQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H 1 1 C,D,I,J,K,L,M,N,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 67 A CYS 72 1_555 A SG CYS 73 A CYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 B SG CYS 67 B CYS 72 1_555 B SG CYS 73 B CYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 C SG CYS 67 C CYS 72 1_555 C SG CYS 73 C CYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 D SG CYS 67 D CYS 72 1_555 D SG CYS 73 D CYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A NZ LYS 121 A LYS 126 1_555 G OP2 0G . A 0G 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.302 ? covale ? covale2 E P 2PO . A 2PO 401 1_555 F O3' U . A U 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.606 ? covale ? covale3 F P U . A U 402 1_555 G O3' 0G . A 0G 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.613 ? covale ? covale4 G P 0G . A 0G 403 1_555 H O3B M7G . A M7G 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.629 ? covale ? covale5 C ND1 HIS 254 C HIS 259 1_555 L O1B M7G . C M7G 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.305 ? covale ? covale6 I O3' U . C U 401 1_555 J P 2PO . C 2PO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.599 ? covale ? covale7 I P U . C U 401 1_555 K O3' 0G . C 0G 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.63 ? covale ? covale8 K P 0G . C 0G 403 1_555 L O3B M7G . C M7G 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.62 ? # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 0G _chem_comp.mon_nstd_flag . _chem_comp.name "L-GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type 'l-rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OP3 P 0G sing 1 n n OP3 HOP3 0G sing 2 n n P OP1 0G doub 3 n n P OP2 0G sing 4 n n P O5' 0G sing 5 n n OP2 HOP2 0G sing 6 n n O5' C5' 0G sing 7 n n C5' C4' 0G sing 8 n n C5' H5' 0G sing 9 n n C5' "H5''" 0G sing 10 n n C4' O4' 0G sing 11 n n C4' C3' 0G sing 12 n n C4' H4' 0G sing 13 n n O4' C1' 0G sing 14 n n C3' O3' 0G sing 15 n n C3' C2' 0G sing 16 n n C3' H3' 0G sing 17 n n O3' HO3' 0G sing 18 n n C2' O2' 0G sing 19 n n C2' C1' 0G sing 20 n n C2' H2' 0G sing 21 n n O2' HO2' 0G sing 22 n n C1' N9 0G sing 23 n n C1' H1' 0G sing 24 n n N9 C8 0G sing 25 n y N9 C4 0G sing 26 n y C8 N7 0G doub 27 n y C8 H8 0G sing 28 n n N7 C5 0G sing 29 n y C6 O6 0G doub 30 n n C6 C5 0G sing 31 n n C6 N1 0G sing 32 n n C5 C4 0G doub 33 n y N1 C2 0G sing 34 n n N1 H1 0G sing 35 n n C2 N2 0G sing 36 n n C2 N3 0G doub 37 n n N2 H21 0G sing 38 n n N2 H22 0G sing 39 n n N3 C4 0G sing 40 n n # _atom_sites.entry_id 6TRQ _atom_sites.fract_transf_matrix[1][1] 0.011395 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009606 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005285 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 2PO A 1 401 1 2PO GGU . F 3 U A 1 402 1 U GGU . G 4 0G A 1 403 1 0G GGU . H 5 M7G A 1 404 1 M7G GGU . I 3 U C 1 401 2 U GGU . J 2 2PO C 1 402 2 2PO GGU . K 4 0G C 1 403 2 0G GGU . L 5 M7G C 1 404 2 M7G GGU . M 6 SO4 D 1 401 1 SO4 SO4 . N 6 SO4 D 1 402 2 SO4 SO4 . O 7 HOH C 1 501 4 HOH HOH . O 7 HOH C 2 502 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 0G . . . G 4 42.706 1.055 33.887 1 65.11 ? P 0G 403 A 1 HETATM 2 O OP1 0G . . . G 4 43.385 0.128 32.887 1 84.89 ? OP1 0G 403 A 1 HETATM 3 O OP2 0G . . . G 4 43.55 0.809 35.126 1 72.57 ? OP2 0G 403 A 1 HETATM 4 O O5' 0G . . . G 4 41.105 0.682 34.008 1 63.39 ? O5' 0G 403 A 1 HETATM 5 C C5' 0G . . . G 4 40.165 0.972 35.103 1 91.82 ? C5' 0G 403 A 1 HETATM 6 C C4' 0G . . . G 4 39.975 -0.22 36.066 1 105.46 ? C4' 0G 403 A 1 HETATM 7 O O4' 0G . . . G 4 39.912 -1.376 35.196 1 106.8 ? O4' 0G 403 A 1 HETATM 8 C C3' 0G . . . G 4 38.889 -0.613 37.124 1 109.23 ? C3' 0G 403 A 1 HETATM 9 O O3' 0G . . . G 4 39.411 -0.319 38.411 1 107.72 ? O3' 0G 403 A 1 HETATM 10 C C2' 0G . . . G 4 38.557 -2.127 36.904 1 105.16 ? C2' 0G 403 A 1 HETATM 11 O O2' 0G . . . G 4 39.449 -3.029 37.517 1 104.83 ? O2' 0G 403 A 1 HETATM 12 C C1' 0G . . . G 4 38.635 -2.073 35.372 1 97.34 ? C1' 0G 403 A 1 HETATM 13 N N9 0G . . . G 4 38.545 -3.23 34.472 1 81.39 ? N9 0G 403 A 1 HETATM 14 C C8 0G . . . G 4 39.48 -3.765 33.661 1 81.42 ? C8 0G 403 A 1 HETATM 15 N N7 0G . . . G 4 38.916 -4.765 32.929 1 83.31 ? N7 0G 403 A 1 HETATM 16 C C6 0G . . . G 4 36.45 -5.662 32.828 1 84.9 ? C6 0G 403 A 1 HETATM 17 O O6 0G . . . G 4 36.577 -6.57 31.981 1 85.15 ? O6 0G 403 A 1 HETATM 18 C C5 0G . . . G 4 37.606 -4.843 33.233 1 77.25 ? C5 0G 403 A 1 HETATM 19 N N1 0G . . . G 4 35.268 -5.399 33.399 1 87.81 ? N1 0G 403 A 1 HETATM 20 C C2 0G . . . G 4 35.109 -4.426 34.315 1 84.93 ? C2 0G 403 A 1 HETATM 21 N N2 0G . . . G 4 33.874 -4.24 34.834 1 90.81 ? N2 0G 403 A 1 HETATM 22 N N3 0G . . . G 4 36.121 -3.634 34.737 1 72.42 ? N3 0G 403 A 1 HETATM 23 C C4 0G . . . G 4 37.361 -3.803 34.232 1 73.53 ? C4 0G 403 A 1 HETATM 24 H H5' 0G . . . G 4 40.535 1.83 35.67 1 110.18 ? H5' 0G 403 A 1 HETATM 25 H "H5''" 0G . . . G 4 39.197 1.243 34.678 1 110.18 ? "H5''" 0G 403 A 1 HETATM 26 H H4' 0G . . . G 4 40.754 0.127 36.759 1 126.55 ? H4' 0G 403 A 1 HETATM 27 H H3' 0G . . . G 4 37.951 -0.049 37.029 1 131.08 ? H3' 0G 403 A 1 HETATM 28 H H2' 0G . . . G 4 37.626 -2.507 37.347 1 126.2 ? H2' 0G 403 A 1 HETATM 29 H HO2' 0G . . . G 4 39.104 -3.929 37.434 1 125.79 ? HO2' 0G 403 A 1 HETATM 30 H H1' 0G . . . G 4 37.678 -1.635 35.056 1 116.81 ? H1' 0G 403 A 1 HETATM 31 H H8 0G . . . G 4 40.514 -3.45 33.602 1 97.7 ? H8 0G 403 A 1 HETATM 32 H H1 0G . . . G 4 34.441 -5.967 33.124 1 105.38 ? H1 0G 403 A 1 HETATM 33 H H21 0G . . . G 4 33.722 -3.518 35.523 1 108.97 ? H21 0G 403 A 1 HETATM 34 H H22 0G . . . G 4 33.109 -4.822 34.531 1 108.97 ? H22 0G 403 A 1 # _model_server_stats.io_time_ms 145 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 34 #