data_6TRY # _model_server_result.job_id pkW79BlM1P7VfUWHIuQwAA _model_server_result.datetime_utc '2024-11-23 05:12:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6try # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 6TRY # _exptl.entry_id 6TRY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TRY _cell.length_a 81.296 _cell.length_b 89.176 _cell.length_c 159.236 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TRY _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 81.296 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id N _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 258 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 258 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id O1A _struct_conn.ptnr2_label_comp_id NAD _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NAD _struct_conn.ptnr2_auth_seq_id 701 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.321 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 250 n n PA O2A NAD sing 251 n n PA O5B NAD sing 252 n n PA O3 NAD sing 253 n n O2A HOA2 NAD sing 254 n n O5B C5B NAD sing 255 n n C5B C4B NAD sing 256 n n C5B H51A NAD sing 257 n n C5B H52A NAD sing 258 n n C4B O4B NAD sing 259 n n C4B C3B NAD sing 260 n n C4B H4B NAD sing 261 n n O4B C1B NAD sing 262 n n C3B O3B NAD sing 263 n n C3B C2B NAD sing 264 n n C3B H3B NAD sing 265 n n O3B HO3A NAD sing 266 n n C2B O2B NAD sing 267 n n C2B C1B NAD sing 268 n n C2B H2B NAD sing 269 n n O2B HO2A NAD sing 270 n n C1B N9A NAD sing 271 n n C1B H1B NAD sing 272 n n N9A C8A NAD sing 273 n y N9A C4A NAD sing 274 n y C8A N7A NAD doub 275 n y C8A H8A NAD sing 276 n n N7A C5A NAD sing 277 n y C5A C6A NAD sing 278 n y C5A C4A NAD doub 279 n y C6A N6A NAD sing 280 n n C6A N1A NAD doub 281 n y N6A H61A NAD sing 282 n n N6A H62A NAD sing 283 n n N1A C2A NAD sing 284 n y C2A N3A NAD doub 285 n y C2A H2A NAD sing 286 n n N3A C4A NAD sing 287 n y O3 PN NAD sing 288 n n PN O1N NAD doub 289 n n PN O2N NAD sing 290 n n PN O5D NAD sing 291 n n O5D C5D NAD sing 292 n n C5D C4D NAD sing 293 n n C5D H51N NAD sing 294 n n C5D H52N NAD sing 295 n n C4D O4D NAD sing 296 n n C4D C3D NAD sing 297 n n C4D H4D NAD sing 298 n n O4D C1D NAD sing 299 n n C3D O3D NAD sing 300 n n C3D C2D NAD sing 301 n n C3D H3D NAD sing 302 n n O3D HO3N NAD sing 303 n n C2D O2D NAD sing 304 n n C2D C1D NAD sing 305 n n C2D H2D NAD sing 306 n n O2D HO2N NAD sing 307 n n C1D N1N NAD sing 308 n n C1D H1D NAD sing 309 n n N1N C2N NAD sing 310 n y N1N C6N NAD doub 311 n y C2N C3N NAD doub 312 n y C2N H2N NAD sing 313 n n C3N C7N NAD sing 314 n n C3N C4N NAD sing 315 n y C7N O7N NAD doub 316 n n C7N N7N NAD sing 317 n n N7N H71N NAD sing 318 n n N7N H72N NAD sing 319 n n C4N C5N NAD doub 320 n y C4N H4N NAD sing 321 n n C5N C6N NAD sing 322 n y C5N H5N NAD sing 323 n n C6N H6N NAD sing 324 n n # _atom_sites.entry_id 6TRY _atom_sites.fract_transf_matrix[1][1] 0.012301 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011214 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00628 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 701 701 NAD NAD . D 3 NW8 A 1 702 801 NW8 M13 . E 4 GOL A 1 703 601 GOL GOL . F 2 NAD B 1 801 801 NAD NAD . G 3 NW8 B 1 802 901 NW8 M13 . H 5 HOH A 1 801 8 HOH HOH . H 5 HOH A 2 802 7 HOH HOH . H 5 HOH A 3 803 3 HOH HOH . H 5 HOH A 4 804 5 HOH HOH . H 5 HOH A 5 805 4 HOH HOH . I 5 HOH B 1 901 11 HOH HOH . I 5 HOH B 2 902 2 HOH HOH . I 5 HOH B 3 903 1 HOH HOH . I 5 HOH B 4 904 9 HOH HOH . I 5 HOH B 5 905 10 HOH HOH . I 5 HOH B 6 906 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 2 30.199 3.256 32.318 1 55.33 ? PA NAD 701 A 1 HETATM 2 O O1A NAD . . . C 2 31.497 3.523 31.393 1 68.5 ? O1A NAD 701 A 1 HETATM 3 O O2A NAD . . . C 2 30.321 3.5 33.812 1 65.17 ? O2A NAD 701 A 1 HETATM 4 O O5B NAD . . . C 2 29.445 1.736 32.243 1 53.83 ? O5B NAD 701 A 1 HETATM 5 C C5B NAD . . . C 2 28.517 1.479 31.205 1 47.68 ? C5B NAD 701 A 1 HETATM 6 C C4B NAD . . . C 2 28.043 -0.01 31.175 1 45.57 ? C4B NAD 701 A 1 HETATM 7 O O4B NAD . . . C 2 28.952 -0.813 31.701 1 44.99 ? O4B NAD 701 A 1 HETATM 8 C C3B NAD . . . C 2 26.783 -0.121 32.016 1 46.16 ? C3B NAD 701 A 1 HETATM 9 O O3B NAD . . . C 2 25.915 -1.008 31.463 1 43.59 ? O3B NAD 701 A 1 HETATM 10 C C2B NAD . . . C 2 27.295 -0.681 33.368 1 47.9 ? C2B NAD 701 A 1 HETATM 11 O O2B NAD . . . C 2 26.191 -1.518 34 1 44.21 ? O2B NAD 701 A 1 HETATM 12 C C1B NAD . . . C 2 28.28 -1.438 33.029 1 45.13 ? C1B NAD 701 A 1 HETATM 13 N N9A NAD . . . C 2 29.251 -1.601 34.108 1 42.64 ? N9A NAD 701 A 1 HETATM 14 C C8A NAD . . . C 2 29.495 -0.804 35.168 1 39.84 ? C8A NAD 701 A 1 HETATM 15 N N7A NAD . . . C 2 30.456 -1.395 35.908 1 40.75 ? N7A NAD 701 A 1 HETATM 16 C C5A NAD . . . C 2 30.797 -2.54 35.313 1 41.43 ? C5A NAD 701 A 1 HETATM 17 C C6A NAD . . . C 2 31.726 -3.511 35.622 1 41.12 ? C6A NAD 701 A 1 HETATM 18 N N6A NAD . . . C 2 32.662 -3.612 36.78 1 44.01 ? N6A NAD 701 A 1 HETATM 19 N N1A NAD . . . C 2 31.87 -4.578 34.821 1 39.33 ? N1A NAD 701 A 1 HETATM 20 C C2A NAD . . . C 2 31.113 -4.707 33.717 1 37.95 ? C2A NAD 701 A 1 HETATM 21 N N3A NAD . . . C 2 30.189 -3.745 33.405 1 42.22 ? N3A NAD 701 A 1 HETATM 22 C C4A NAD . . . C 2 30.049 -2.667 34.201 1 44.76 ? C4A NAD 701 A 1 HETATM 23 O O3 NAD . . . C 2 29.208 4.392 31.631 1 64.86 ? O3 NAD 701 A 1 HETATM 24 P PN NAD . . . C 2 27.713 4.844 32.035 1 77.7 ? PN NAD 701 A 1 HETATM 25 O O1N NAD . . . C 2 26.773 3.646 32.115 1 68.65 ? O1N NAD 701 A 1 HETATM 26 O O2N NAD . . . C 2 27.291 5.838 31.002 1 71.92 ? O2N NAD 701 A 1 HETATM 27 O O5D NAD . . . C 2 27.913 5.599 33.481 1 91.74 ? O5D NAD 701 A 1 HETATM 28 C C5D NAD . . . C 2 29.122 6.32 33.609 1 87.75 ? C5D NAD 701 A 1 HETATM 29 C C4D NAD . . . C 2 29.439 6.361 35.18 1 100 ? C4D NAD 701 A 1 HETATM 30 O O4D NAD . . . C 2 30.688 6.667 35.431 1 104.78 ? O4D NAD 701 A 1 HETATM 31 C C3D NAD . . . C 2 28.62 7.526 35.698 1 112.66 ? C3D NAD 701 A 1 HETATM 32 O O3D NAD . . . C 2 27.393 7.12 35.972 1 106.55 ? O3D NAD 701 A 1 HETATM 33 C C2D NAD . . . C 2 29.439 8.043 36.938 1 116.51 ? C2D NAD 701 A 1 HETATM 34 O O2D NAD . . . C 2 28.83 7.626 38.273 1 102.95 ? O2D NAD 701 A 1 HETATM 35 C C1D NAD . . . C 2 30.639 7.567 36.791 1 116.86 ? C1D NAD 701 A 1 HETATM 36 N N1N NAD . . . C 2 31.63 8.661 36.759 1 125.39 ? N1N NAD 701 A 1 HETATM 37 C C2N NAD . . . C 2 32.345 8.9 37.91 1 124.72 ? C2N NAD 701 A 1 HETATM 38 C C3N NAD . . . C 2 33.297 9.925 37.967 1 129.92 ? C3N NAD 701 A 1 HETATM 39 C C7N NAD . . . C 2 34.063 10.138 39.276 1 127.87 ? C7N NAD 701 A 1 HETATM 40 O O7N NAD . . . C 2 34.837 11.053 39.397 1 129.74 ? O7N NAD 701 A 1 HETATM 41 N N7N NAD . . . C 2 33.866 9.227 40.407 1 108.07 ? N7N NAD 701 A 1 HETATM 42 C C4N NAD . . . C 2 33.509 10.69 36.859 1 130.67 ? C4N NAD 701 A 1 HETATM 43 C C5N NAD . . . C 2 32.794 10.456 35.702 1 126.95 ? C5N NAD 701 A 1 HETATM 44 C C6N NAD . . . C 2 31.838 9.423 35.653 1 120.93 ? C6N NAD 701 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #