data_6TT7
#
_model_server_result.job_id            V75gkE3u4fo8FNS6O08lpg 
_model_server_result.datetime_utc      '2024-10-11 08:26:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6tt7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"MA","auth_seq_id":201}' 
#
_entry.id    6TT7 
#
_exptl.entry_id    6TT7 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              792.075 
_entity.id                          21 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6TT7 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6TT7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    28-meric 
_pdbx_struct_assembly.oligomeric_count      28 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      21 
_struct_asym.id                             MA 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 219 B THR 176 1_555 CA MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc2 CA MG MG . B MG 601 1_555 DA O3B ADP . B ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc3 CA MG MG . B MG 601 1_555 DA O3A ADP . B ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
metalc ? metalc4 B OG1 THR 219 C THR 176 1_555 EA MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc5 EA MG MG . C MG 601 1_555 FA O2B ADP . C ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
metalc ? metalc6 GA MG MG . A MG 601 1_555 HA O2B ADP . A ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
metalc ? metalc7 GA MG MG . A MG 601 1_555 HA O2A ADP . A ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc8 GA MG MG . A MG 601 1_555 HA O3A ADP . A ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc9 GA MG MG . A MG 601 1_555 HA O3B ADP . A ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.82 ? 
#
_chem_comp.formula           'C42 H82 N O10 P' 
_chem_comp.formula_weight    792.075 
_chem_comp.id                P5S 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'phosphatidyl serine' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CA C P5S sing 657 n n 
O C P5S doub 658 n n 
C OXT P5S sing 659 n n 
CA N P5S sing 660 n n 
N HN P5S sing 661 n n 
N HNA P5S sing 662 n n 
O19 C1 P5S sing 663 n n 
C1 C2 P5S sing 664 n n 
C1 H1 P5S sing 665 n n 
C1 H1A P5S sing 666 n n 
C2 O37 P5S sing 667 n n 
C2 C3 P5S sing 668 n n 
C2 H2 P5S sing 669 n n 
O16 C3 P5S sing 670 n n 
C3 H3 P5S sing 671 n n 
C3 H3A P5S sing 672 n n 
CB CA P5S sing 673 n n 
CA HA P5S sing 674 n n 
CB OG P5S sing 675 n n 
CB HB P5S sing 676 n n 
CB HBA P5S sing 677 n n 
P12 OG P5S sing 678 n n 
O16 P12 P5S sing 679 n n 
O13 P12 P5S doub 680 n n 
P12 O15 P5S sing 681 n n 
O15 HO15 P5S sing 682 n n 
C20 C17 P5S sing 683 n n 
O19 C17 P5S sing 684 n n 
C17 O18 P5S doub 685 n n 
C21 C20 P5S sing 686 n n 
C20 H20 P5S sing 687 n n 
C20 H20A P5S sing 688 n n 
C21 C22 P5S sing 689 n n 
C21 H21 P5S sing 690 n n 
C21 H21A P5S sing 691 n n 
C23 C22 P5S sing 692 n n 
C22 H22 P5S sing 693 n n 
C22 H22A P5S sing 694 n n 
C24 C23 P5S sing 695 n n 
C23 H23 P5S sing 696 n n 
C23 H23A P5S sing 697 n n 
C25 C24 P5S sing 698 n n 
C24 H24 P5S sing 699 n n 
C24 H24A P5S sing 700 n n 
C26 C25 P5S sing 701 n n 
C25 H25 P5S sing 702 n n 
C25 H25A P5S sing 703 n n 
C26 C27 P5S sing 704 n n 
C26 H26 P5S sing 705 n n 
C26 H26A P5S sing 706 n n 
C27 C28 P5S sing 707 n n 
C27 H27 P5S sing 708 n n 
C27 H27A P5S sing 709 n n 
C29 C28 P5S sing 710 n n 
C28 H28 P5S sing 711 n n 
C28 H28A P5S sing 712 n n 
C30 C29 P5S sing 713 n n 
C29 H29 P5S sing 714 n n 
C29 H29A P5S sing 715 n n 
C31 C30 P5S sing 716 n n 
C30 H30 P5S sing 717 n n 
C30 H30A P5S sing 718 n n 
C31 C32 P5S sing 719 n n 
C31 H31 P5S sing 720 n n 
C31 H31A P5S sing 721 n n 
C33 C32 P5S sing 722 n n 
C32 H32 P5S sing 723 n n 
C32 H32A P5S sing 724 n n 
C33 C34 P5S sing 725 n n 
C33 H33 P5S sing 726 n n 
C33 H33A P5S sing 727 n n 
C35 C34 P5S sing 728 n n 
C34 H34 P5S sing 729 n n 
C34 H34A P5S sing 730 n n 
C36 C35 P5S sing 731 n n 
C35 H35 P5S sing 732 n n 
C35 H35A P5S sing 733 n n 
C36 H36 P5S sing 734 n n 
C36 H36A P5S sing 735 n n 
C36 H36B P5S sing 736 n n 
C38 O37 P5S sing 737 n n 
O47 C38 P5S doub 738 n n 
C38 C39 P5S sing 739 n n 
C40 C39 P5S sing 740 n n 
C39 H39 P5S sing 741 n n 
C39 H39A P5S sing 742 n n 
C41 C40 P5S sing 743 n n 
C40 H40 P5S sing 744 n n 
C40 H40A P5S sing 745 n n 
C42 C41 P5S sing 746 n n 
C41 H41 P5S sing 747 n n 
C41 H41A P5S sing 748 n n 
C43 C42 P5S sing 749 n n 
C42 H42 P5S sing 750 n n 
C42 H42A P5S sing 751 n n 
C43 C44 P5S sing 752 n n 
C43 H43 P5S sing 753 n n 
C43 H43A P5S sing 754 n n 
C44 C45 P5S sing 755 n n 
C44 H44 P5S sing 756 n n 
C44 H44A P5S sing 757 n n 
C45 C46 P5S sing 758 n n 
C45 H45 P5S sing 759 n n 
C45 H45A P5S sing 760 n n 
C46 C48 P5S sing 761 n n 
C46 H46 P5S sing 762 n n 
C46 H46A P5S sing 763 n n 
C48 C49 P5S sing 764 n n 
C48 H48 P5S sing 765 n n 
C48 H48A P5S sing 766 n n 
C49 C50 P5S sing 767 n n 
C49 H49 P5S sing 768 n n 
C49 H49A P5S sing 769 n n 
C50 C51 P5S sing 770 n n 
C50 H50 P5S sing 771 n n 
C50 H50A P5S sing 772 n n 
C51 C52 P5S sing 773 n n 
C51 H51 P5S sing 774 n n 
C51 H51A P5S sing 775 n n 
C53 C52 P5S sing 776 n n 
C52 H52 P5S sing 777 n n 
C52 H52A P5S sing 778 n n 
C53 C54 P5S sing 779 n n 
C53 H53 P5S sing 780 n n 
C53 H53A P5S sing 781 n n 
C55 C54 P5S sing 782 n n 
C54 H54 P5S sing 783 n n 
C54 H54A P5S sing 784 n n 
C55 C56 P5S sing 785 n n 
C55 H55 P5S sing 786 n n 
C55 H55A P5S sing 787 n n 
C56 H56 P5S sing 788 n n 
C56 H56A P5S sing 789 n n 
C56 H56B P5S sing 790 n n 
OXT HXT P5S sing 791 n n 
#
_atom_sites.entry_id                     6TT7 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
CA 18 MG B 1 601 599 MG MG . 
DA 19 ADP B 1 602 600 ADP ADP . 
EA 18 MG C 1 601 599 MG MG . 
FA 19 ADP C 1 602 600 ADP ADP . 
GA 18 MG A 1 601 599 MG MG . 
HA 19 ADP A 1 602 600 ADP ADP . 
IA 19 ADP D 1 600 600 ADP ADP . 
JA 19 ADP F 1 600 600 ADP ADP . 
KA 20 LHG K 1 301 301 LHG LHG . 
LA 20 LHG K 1 302 101 LHG LHG . 
MA 21 P5S 2 1 201 201 P5S P5S . 
NA 20 LHG 2 1 202 101 LHG LHG . 
OA 22 CDL R 1 301 301 CDL CDL . 
PA 22 CDL R 1 302 401 CDL CDL . 
QA 22 CDL R 1 303 501 CDL CDL . 
RA 20 LHG R 1 304 201 LHG LHG . 
SA 20 LHG S 1 201 201 LHG LHG . 
TA 20 LHG S 1 202 301 LHG LHG . 
UA 23 S12 T 1 201 201 S12 LPS . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C P5S . . . MA 21 79.239 81.614 73.59 1 125.24 ? C P5S 201 2 1 
HETATM 2 N N P5S . . . MA 21 80.662 82.726 71.845 1 134.67 ? N P5S 201 2 1 
HETATM 3 O O P5S . . . MA 21 79.444 82.298 74.572 1 127.75 ? O P5S 201 2 1 
HETATM 4 C C1 P5S . . . MA 21 79.018 80.416 69.07 1 119.47 ? C1 P5S 201 2 1 
HETATM 5 C C2 P5S . . . MA 21 79.946 79.264 68.769 1 127.74 ? C2 P5S 201 2 1 
HETATM 6 C C3 P5S . . . MA 21 80.736 78.802 69.968 1 164.14 ? C3 P5S 201 2 1 
HETATM 7 C CA P5S . . . MA 21 80.25 81.454 72.456 1 123.61 ? CA P5S 201 2 1 
HETATM 8 C CB P5S . . . MA 21 81.479 80.72 72.962 1 146.05 ? CB P5S 201 2 1 
HETATM 9 O OG P5S . . . MA 21 81.087 79.378 73.322 1 144.05 ? OG P5S 201 2 1 
HETATM 10 P P12 P5S . . . MA 21 80.065 78.349 72.612 1 135.92 ? P12 P5S 201 2 1 
HETATM 11 O O13 P5S . . . MA 21 80.598 77.009 72.899 1 150.37 ? O13 P5S 201 2 1 
HETATM 12 O O15 P5S . . . MA 21 78.721 78.571 73.297 1 148.36 ? O15 P5S 201 2 1 
HETATM 13 O O16 P5S . . . MA 21 79.769 78.564 71.018 1 142.98 ? O16 P5S 201 2 1 
HETATM 14 C C17 P5S . . . MA 21 76.919 80.121 68.044 1 117.12 ? C17 P5S 201 2 1 
HETATM 15 O O18 P5S . . . MA 21 76.452 79.739 69.082 1 120.82 ? O18 P5S 201 2 1 
HETATM 16 O O19 P5S . . . MA 21 78.164 80.57 67.917 1 115.21 ? O19 P5S 201 2 1 
HETATM 17 C C20 P5S . . . MA 21 76.202 80.13 66.731 1 112.6 ? C20 P5S 201 2 1 
HETATM 18 C C21 P5S . . . MA 21 77.127 79.807 65.568 1 93.42 ? C21 P5S 201 2 1 
HETATM 19 C C22 P5S . . . MA 21 76.361 79.456 64.314 1 94.27 ? C22 P5S 201 2 1 
HETATM 20 C C23 P5S . . . MA 21 77.231 79.322 63.082 1 112.75 ? C23 P5S 201 2 1 
HETATM 21 C C24 P5S . . . MA 21 77.752 80.647 62.551 1 87.59 ? C24 P5S 201 2 1 
HETATM 22 C C25 P5S . . . MA 21 77.383 80.907 61.099 1 74.41 ? C25 P5S 201 2 1 
HETATM 23 C C26 P5S . . . MA 21 77.745 79.762 60.173 1 109.16 ? C26 P5S 201 2 1 
HETATM 24 C C27 P5S . . . MA 21 77.063 79.822 58.818 1 118.73 ? C27 P5S 201 2 1 
HETATM 25 C C28 P5S . . . MA 21 77.405 81.059 58.004 1 137.58 ? C28 P5S 201 2 1 
HETATM 26 C C29 P5S . . . MA 21 76.954 80.981 56.552 1 115.37 ? C29 P5S 201 2 1 
HETATM 27 C C30 P5S . . . MA 21 77.526 82.077 55.669 1 70.37 ? C30 P5S 201 2 1 
HETATM 28 C C31 P5S . . . MA 21 77.349 81.813 54.186 1 85.27 ? C31 P5S 201 2 1 
HETATM 29 C C32 P5S . . . MA 21 78.361 82.535 53.314 1 118.53 ? C32 P5S 201 2 1 
HETATM 30 C C33 P5S . . . MA 21 78.557 81.892 51.951 1 104.13 ? C33 P5S 201 2 1 
HETATM 31 C C34 P5S . . . MA 21 79.755 82.418 51.181 1 79.57 ? C34 P5S 201 2 1 
HETATM 32 C C35 P5S . . . MA 21 79.634 83.875 50.808 1 76.18 ? C35 P5S 201 2 1 
HETATM 33 C C36 P5S . . . MA 21 78.448 84.156 49.916 1 79.67 ? C36 P5S 201 2 1 
HETATM 34 O O37 P5S . . . MA 21 80.765 79.501 67.564 1 102.42 ? O37 P5S 201 2 1 
HETATM 35 C C38 P5S . . . MA 21 81.582 80.578 67.435 1 99.27 ? C38 P5S 201 2 1 
HETATM 36 C C39 P5S . . . MA 21 81.977 80.774 66.001 1 116.78 ? C39 P5S 201 2 1 
HETATM 37 C C40 P5S . . . MA 21 81.936 82.232 65.566 1 110.09 ? C40 P5S 201 2 1 
HETATM 38 C C41 P5S . . . MA 21 81.212 82.444 64.245 1 118.35 ? C41 P5S 201 2 1 
HETATM 39 C C42 P5S . . . MA 21 81.796 81.687 63.059 1 120.2 ? C42 P5S 201 2 1 
HETATM 40 C C43 P5S . . . MA 21 81.057 81.942 61.747 1 113.14 ? C43 P5S 201 2 1 
HETATM 41 C C44 P5S . . . MA 21 81.672 81.268 60.529 1 106.25 ? C44 P5S 201 2 1 
HETATM 42 C C45 P5S . . . MA 21 80.931 81.517 59.22 1 98.86 ? C45 P5S 201 2 1 
HETATM 43 C C46 P5S . . . MA 21 81.816 81.31 58 1 100.03 ? C46 P5S 201 2 1 
HETATM 44 O O47 P5S . . . MA 21 81.95 81.28 68.342 1 82.28 ? O47 P5S 201 2 1 
HETATM 45 C C48 P5S . . . MA 21 81.109 81.317 56.654 1 104.46 ? C48 P5S 201 2 1 
HETATM 46 C C49 P5S . . . MA 21 80.498 79.981 56.247 1 105.36 ? C49 P5S 201 2 1 
HETATM 47 C C50 P5S . . . MA 21 80.381 79.81 54.739 1 97.05 ? C50 P5S 201 2 1 
HETATM 48 C C51 P5S . . . MA 21 79.415 78.728 54.279 1 83.92 ? C51 P5S 201 2 1 
HETATM 49 C C52 P5S . . . MA 21 79.526 78.419 52.791 1 81.58 ? C52 P5S 201 2 1 
HETATM 50 C C53 P5S . . . MA 21 78.484 77.447 52.267 1 80.46 ? C53 P5S 201 2 1 
HETATM 51 C C54 P5S . . . MA 21 78.73 77.005 50.836 1 69.4 ? C54 P5S 201 2 1 
HETATM 52 C C55 P5S . . . MA 21 78.844 78.144 49.847 1 76.7 ? C55 P5S 201 2 1 
HETATM 53 C C56 P5S . . . MA 21 79.13 77.675 48.437 1 56.44 ? C56 P5S 201 2 1 
HETATM 54 O OXT P5S . . . MA 21 78.147 80.925 73.383 1 115.78 ? OXT P5S 201 2 1 
#
_model_server_stats.io_time_ms              169 
_model_server_stats.parse_time_ms           91 
_model_server_stats.create_model_time_ms    77 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           54 
#