data_6TT7 # _model_server_result.job_id XjFwz-Nxxr9mX64jbFzqTA _model_server_result.datetime_utc '2024-10-11 08:29:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tt7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"UA","auth_seq_id":201}' # _entry.id 6TT7 # _exptl.entry_id 6TT7 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.597 _entity.id 23 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description O-[(S)-hydroxy{[(2S)-2-hydroxy-3-(octadec-9-enoyloxy)propyl]oxy}phosphoryl]-L-serine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TT7 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TT7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 28-meric _pdbx_struct_assembly.oligomeric_count 28 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 23 _struct_asym.id UA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 219 B THR 176 1_555 CA MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc2 CA MG MG . B MG 601 1_555 DA O3B ADP . B ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc3 CA MG MG . B MG 601 1_555 DA O3A ADP . B ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc4 B OG1 THR 219 C THR 176 1_555 EA MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc5 EA MG MG . C MG 601 1_555 FA O2B ADP . C ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc6 GA MG MG . A MG 601 1_555 HA O2B ADP . A ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc7 GA MG MG . A MG 601 1_555 HA O2A ADP . A ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc8 GA MG MG . A MG 601 1_555 HA O3A ADP . A ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc9 GA MG MG . A MG 601 1_555 HA O3B ADP . A ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.82 ? # _chem_comp.formula 'C24 H46 N O9 P' _chem_comp.formula_weight 523.597 _chem_comp.id S12 _chem_comp.mon_nstd_flag n _chem_comp.name O-[(S)-hydroxy{[(2S)-2-hydroxy-3-(octadec-9-enoyloxy)propyl]oxy}phosphoryl]-L-serine _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms 1-oleoyl-2-hydroxy-sn-glycero-3-phospho-L-serine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C CA S12 sing 832 n n C O S12 doub 833 n n C OXT S12 sing 834 n n N CA S12 sing 835 n n N H S12 sing 836 n n N H2 S12 sing 837 n n P OG S12 sing 838 n n P O2 S12 sing 839 n n P O3 S12 doub 840 n n P O4 S12 sing 841 n n OG CB S12 sing 842 n n C2 O2 S12 sing 843 n n C2 C3 S12 sing 844 n n C2 H2B S12 sing 845 n n C2 H2A S12 sing 846 n n C3 C4 S12 sing 847 n n C3 O11 S12 sing 848 n n C3 H3 S12 sing 849 n n C4 O52 S12 sing 850 n n C4 H4 S12 sing 851 n n C4 H4A S12 sing 852 n n C5 C6 S12 sing 853 n n C5 O51 S12 doub 854 n n C5 O52 S12 sing 855 n n C6 C7 S12 sing 856 n n C6 H6 S12 sing 857 n n C6 H6A S12 sing 858 n n C7 C8 S12 sing 859 n n C7 H7 S12 sing 860 n n C8 C9 S12 sing 861 n n C8 H8 S12 sing 862 n n C9 C10 S12 sing 863 n n C9 H9 S12 sing 864 n n C9 H9A S12 sing 865 n n CA CB S12 sing 866 n n CA HA S12 sing 867 n n CB HB2 S12 sing 868 n n CB HB3 S12 sing 869 n n C10 C11 S12 sing 870 n n C10 H10 S12 sing 871 n n C11 C12 S12 sing 872 n n C11 H11 S12 sing 873 n n O11 HO11 S12 sing 874 n n C12 C13 S12 sing 875 n n C12 H12 S12 sing 876 n n C13 C14 S12 doub 877 e n C14 H14 S12 sing 878 n n C14 C15 S12 sing 879 n n C15 C16 S12 sing 880 n n C16 C17 S12 sing 881 n n C17 C18 S12 sing 882 n n C18 C19 S12 sing 883 n n C19 C20 S12 sing 884 n n C20 C21 S12 sing 885 n n C21 C22 S12 sing 886 n n O4 H22 S12 sing 887 n n C7 H23 S12 sing 888 n n C8 H24 S12 sing 889 n n C10 H25 S12 sing 890 n n C11 H26 S12 sing 891 n n C12 H27 S12 sing 892 n n C13 H28 S12 sing 893 n n OXT HXT S12 sing 894 n n C15 H30 S12 sing 895 n n C15 H31 S12 sing 896 n n C16 H32 S12 sing 897 n n C16 H33 S12 sing 898 n n C17 H34 S12 sing 899 n n C17 H35 S12 sing 900 n n C18 H36 S12 sing 901 n n C18 H37 S12 sing 902 n n C19 H38 S12 sing 903 n n C19 H39 S12 sing 904 n n C20 H40 S12 sing 905 n n C20 H41 S12 sing 906 n n C21 H42 S12 sing 907 n n C21 H43 S12 sing 908 n n C22 H44 S12 sing 909 n n C22 H45 S12 sing 910 n n C22 H46 S12 sing 911 n n # _atom_sites.entry_id 6TT7 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code CA 18 MG B 1 601 599 MG MG . DA 19 ADP B 1 602 600 ADP ADP . EA 18 MG C 1 601 599 MG MG . FA 19 ADP C 1 602 600 ADP ADP . GA 18 MG A 1 601 599 MG MG . HA 19 ADP A 1 602 600 ADP ADP . IA 19 ADP D 1 600 600 ADP ADP . JA 19 ADP F 1 600 600 ADP ADP . KA 20 LHG K 1 301 301 LHG LHG . LA 20 LHG K 1 302 101 LHG LHG . MA 21 P5S 2 1 201 201 P5S P5S . NA 20 LHG 2 1 202 101 LHG LHG . OA 22 CDL R 1 301 301 CDL CDL . PA 22 CDL R 1 302 401 CDL CDL . QA 22 CDL R 1 303 501 CDL CDL . RA 20 LHG R 1 304 201 LHG LHG . SA 20 LHG S 1 201 201 LHG LHG . TA 20 LHG S 1 202 301 LHG LHG . UA 23 S12 T 1 201 201 S12 LPS . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C S12 . . . UA 23 75.83 76.862 18.437 1 115.53 ? C S12 201 T 1 HETATM 2 N N S12 . . . UA 23 78.15 77.632 18.097 1 101.44 ? N S12 201 T 1 HETATM 3 P P S12 . . . UA 23 76.305 81.644 18.361 1 156.91 ? P S12 201 T 1 HETATM 4 O OG S12 . . . UA 23 77.026 80.336 17.769 1 124.19 ? OG S12 201 T 1 HETATM 5 C C2 S12 . . . UA 23 75.364 81.579 20.827 1 128.91 ? C2 S12 201 T 1 HETATM 6 O O2 S12 . . . UA 23 76.514 81.524 19.956 1 150.4 ? O2 S12 201 T 1 HETATM 7 C C3 S12 . . . UA 23 75.453 80.448 21.823 1 107.05 ? C3 S12 201 T 1 HETATM 8 O O3 S12 . . . UA 23 76.906 82.877 17.815 1 149.9 ? O3 S12 201 T 1 HETATM 9 C C4 S12 . . . UA 23 74.461 80.555 22.956 1 105.38 ? C4 S12 201 T 1 HETATM 10 O O4 S12 . . . UA 23 74.811 81.482 18.096 1 149.83 ? O4 S12 201 T 1 HETATM 11 C C5 S12 . . . UA 23 74.652 81.742 25.005 1 121.28 ? C5 S12 201 T 1 HETATM 12 C C6 S12 . . . UA 23 74.948 83.082 25.614 1 119.28 ? C6 S12 201 T 1 HETATM 13 C C7 S12 . . . UA 23 76.412 83.27 25.988 1 106.13 ? C7 S12 201 T 1 HETATM 14 C C8 S12 . . . UA 23 77.321 83.433 24.78 1 119.49 ? C8 S12 201 T 1 HETATM 15 C C9 S12 . . . UA 23 78.789 83.132 25.044 1 121.76 ? C9 S12 201 T 1 HETATM 16 C CA S12 . . . UA 23 76.784 78.048 18.448 1 114.34 ? CA S12 201 T 1 HETATM 17 C CB S12 . . . UA 23 76.247 79.144 17.542 1 111.99 ? CB S12 201 T 1 HETATM 18 C C10 S12 . . . UA 23 79.191 81.676 24.823 1 116.93 ? C10 S12 201 T 1 HETATM 19 C C11 S12 . . . UA 23 79.524 80.911 26.095 1 112.72 ? C11 S12 201 T 1 HETATM 20 O O11 S12 . . . UA 23 76.777 80.396 22.357 1 98.81 ? O11 S12 201 T 1 HETATM 21 C C12 S12 . . . UA 23 78.331 80.277 26.785 1 101.58 ? C12 S12 201 T 1 HETATM 22 C C13 S12 . . . UA 23 78.539 80.001 28.262 1 92.09 ? C13 S12 201 T 1 HETATM 23 C C14 S12 . . . UA 23 77.347 79.341 28.926 1 94.39 ? C14 S12 201 T 1 HETATM 24 O O51 S12 . . . UA 23 74.394 80.749 25.628 1 119.96 ? O51 S12 201 T 1 HETATM 25 O O52 S12 . . . UA 23 74.706 81.788 23.671 1 115.6 ? O52 S12 201 T 1 HETATM 26 O O S12 . . . UA 23 74.826 76.818 19.113 1 123.98 ? O S12 201 T 1 HETATM 27 O OXT S12 . . . UA 23 76.215 75.917 17.628 1 102.72 ? OXT S12 201 T 1 HETATM 28 C C15 S12 . . . UA 23 77.338 79.481 30.434 1 89.75 ? C15 S12 201 T 1 HETATM 29 C C16 S12 . . . UA 23 77.269 80.924 30.898 1 92.4 ? C16 S12 201 T 1 HETATM 30 C C17 S12 . . . UA 23 77.249 81.091 32.405 1 84.68 ? C17 S12 201 T 1 HETATM 31 C C18 S12 . . . UA 23 78.444 80.467 33.102 1 93.13 ? C18 S12 201 T 1 HETATM 32 C C19 S12 . . . UA 23 78.495 80.739 34.594 1 102.89 ? C19 S12 201 T 1 HETATM 33 C C20 S12 . . . UA 23 78.618 82.212 34.942 1 102.72 ? C20 S12 201 T 1 HETATM 34 C C21 S12 . . . UA 23 78.618 82.489 36.425 1 69.23 ? C21 S12 201 T 1 HETATM 35 C C22 S12 . . . UA 23 79.688 81.729 37.161 1 60.99 ? C22 S12 201 T 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 64 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #