data_6TT7 # _model_server_result.job_id VKgLXctnYUF1ioP7FsYe2A _model_server_result.datetime_utc '2024-10-11 08:30:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tt7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"JA","auth_seq_id":600}' # _entry.id 6TT7 # _exptl.entry_id 6TT7 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 19 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TT7 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TT7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 28-meric _pdbx_struct_assembly.oligomeric_count 28 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 19 DA N N ? 19 FA N N ? 19 HA N N ? 19 IA N N ? 19 JA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 219 B THR 176 1_555 CA MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc2 CA MG MG . B MG 601 1_555 DA O3B ADP . B ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc3 CA MG MG . B MG 601 1_555 DA O3A ADP . B ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc4 B OG1 THR 219 C THR 176 1_555 EA MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc5 EA MG MG . C MG 601 1_555 FA O2B ADP . C ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc6 GA MG MG . A MG 601 1_555 HA O2B ADP . A ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc7 GA MG MG . A MG 601 1_555 HA O2A ADP . A ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc8 GA MG MG . A MG 601 1_555 HA O3A ADP . A ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc9 GA MG MG . A MG 601 1_555 HA O3B ADP . A ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.82 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 6TT7 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code CA 18 MG B 1 601 599 MG MG . DA 19 ADP B 1 602 600 ADP ADP . EA 18 MG C 1 601 599 MG MG . FA 19 ADP C 1 602 600 ADP ADP . GA 18 MG A 1 601 599 MG MG . HA 19 ADP A 1 602 600 ADP ADP . IA 19 ADP D 1 600 600 ADP ADP . JA 19 ADP F 1 600 600 ADP ADP . KA 20 LHG K 1 301 301 LHG LHG . LA 20 LHG K 1 302 101 LHG LHG . MA 21 P5S 2 1 201 201 P5S P5S . NA 20 LHG 2 1 202 101 LHG LHG . OA 22 CDL R 1 301 301 CDL CDL . PA 22 CDL R 1 302 401 CDL CDL . QA 22 CDL R 1 303 501 CDL CDL . RA 20 LHG R 1 304 201 LHG LHG . SA 20 LHG S 1 201 201 LHG LHG . TA 20 LHG S 1 202 301 LHG LHG . UA 23 S12 T 1 201 201 S12 LPS . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . JA 19 70.701 102.06 167.212 1 66.91 ? PB ADP 600 F 1 HETATM 2 O O1B ADP . . . JA 19 70.005 100.84 166.678 1 57.18 ? O1B ADP 600 F 1 HETATM 3 O O2B ADP . . . JA 19 72.056 101.816 167.817 1 53.43 ? O2B ADP 600 F 1 HETATM 4 O O3B ADP . . . JA 19 69.821 102.971 168.019 1 79.86 ? O3B ADP 600 F 1 HETATM 5 P PA ADP . . . JA 19 69.817 103.796 165.251 1 54.41 ? PA ADP 600 F 1 HETATM 6 O O1A ADP . . . JA 19 68.548 103.002 165.365 1 52.9 ? O1A ADP 600 F 1 HETATM 7 O O2A ADP . . . JA 19 69.901 105.184 165.821 1 40.63 ? O2A ADP 600 F 1 HETATM 8 O O3A ADP . . . JA 19 70.992 102.912 165.888 1 68.5 ? O3A ADP 600 F 1 HETATM 9 O O5' ADP . . . JA 19 70.222 103.891 163.707 1 43.84 ? O5' ADP 600 F 1 HETATM 10 C C5' ADP . . . JA 19 70.039 105.12 163.023 1 39.76 ? C5' ADP 600 F 1 HETATM 11 C C4' ADP . . . JA 19 70.893 105.115 161.764 1 58.82 ? C4' ADP 600 F 1 HETATM 12 O O4' ADP . . . JA 19 70.281 104.298 160.77 1 71.62 ? O4' ADP 600 F 1 HETATM 13 C C3' ADP . . . JA 19 71.014 106.511 161.194 1 65.41 ? C3' ADP 600 F 1 HETATM 14 O O3' ADP . . . JA 19 72.383 106.908 161.199 1 64.07 ? O3' ADP 600 F 1 HETATM 15 C C2' ADP . . . JA 19 70.545 106.421 159.766 1 71.42 ? C2' ADP 600 F 1 HETATM 16 O O2' ADP . . . JA 19 71.627 106.77 158.905 1 65.57 ? O2' ADP 600 F 1 HETATM 17 C C1' ADP . . . JA 19 70.176 104.976 159.522 1 74.31 ? C1' ADP 600 F 1 HETATM 18 N N9 ADP . . . JA 19 68.772 104.886 159.063 1 70.4 ? N9 ADP 600 F 1 HETATM 19 C C8 ADP . . . JA 19 67.777 104.275 159.722 1 74.03 ? C8 ADP 600 F 1 HETATM 20 N N7 ADP . . . JA 19 66.606 104.348 159.05 1 63.05 ? N7 ADP 600 F 1 HETATM 21 C C5 ADP . . . JA 19 66.854 105.025 157.928 1 62.81 ? C5 ADP 600 F 1 HETATM 22 C C6 ADP . . . JA 19 66.068 105.466 156.772 1 84.35 ? C6 ADP 600 F 1 HETATM 23 N N6 ADP . . . JA 19 64.76 105.183 156.676 1 91.89 ? N6 ADP 600 F 1 HETATM 24 N N1 ADP . . . JA 19 66.695 106.145 155.8 1 96.22 ? N1 ADP 600 F 1 HETATM 25 C C2 ADP . . . JA 19 68 106.428 155.872 1 96.19 ? C2 ADP 600 F 1 HETATM 26 N N3 ADP . . . JA 19 68.778 106.065 156.897 1 80.02 ? N3 ADP 600 F 1 HETATM 27 C C4 ADP . . . JA 19 68.275 105.371 157.935 1 60.96 ? C4 ADP 600 F 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 67 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #