data_6TTM # _model_server_result.job_id 6gdIxmjcegAyruJohgWXOQ _model_server_result.datetime_utc '2024-10-19 14:17:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ttm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 6TTM # _exptl.entry_id 6TTM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.086 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-OXALYLGLYCINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TTM _cell.length_a 68.536 _cell.length_b 70.78 _cell.length_c 78.63 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TTM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 70 A GLY 67 1_555 H SR SR . A SR 407 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc2 A OE1 GLU 95 A GLU 92 1_555 H SR SR . A SR 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.786 ? metalc ? metalc3 A OE2 GLU 95 A GLU 92 1_555 H SR SR . A SR 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc4 A OE1 GLN 98 A GLN 95 1_555 H SR SR . A SR 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc5 A O GLY 101 A GLY 98 1_555 H SR SR . A SR 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc6 A NE2 HIS 220 A HIS 217 1_555 D NI NI . A NI 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc7 A OD1 ASP 222 A ASP 219 1_555 D NI NI . A NI 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc8 A NE2 HIS 277 A HIS 274 1_555 D NI NI . A NI 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc9 D NI NI . A NI 403 1_555 E O2 OGA . A OGA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc10 D NI NI . A NI 403 1_555 E O2' OGA . A OGA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc11 D NI NI . A NI 403 1_555 K O HOH . A HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc12 H SR SR . A SR 407 1_555 K O HOH . A HOH 595 2_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc13 H SR SR . A SR 407 1_555 K O HOH . A HOH 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? # _chem_comp.formula 'C4 H5 N O5' _chem_comp.formula_weight 147.086 _chem_comp.id OGA _chem_comp.mon_nstd_flag . _chem_comp.name N-OXALYLGLYCINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 OGA sing 292 n n C1 O1 OGA doub 293 n n C1 O2 OGA sing 294 n n C2 O2' OGA doub 295 n n C2 N1 OGA sing 296 n n C4 C5 OGA sing 297 n n C4 N1 OGA sing 298 n n C4 H4C1 OGA sing 299 n n C4 H4C2 OGA sing 300 n n C5 O3 OGA sing 301 n n C5 O4 OGA doub 302 n n O2 H2 OGA sing 303 n n O3 H3 OGA sing 304 n n N1 H1 OGA sing 305 n n # _atom_sites.entry_id 6TTM _atom_sites.fract_transf_matrix[1][1] 0.014591 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014128 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012718 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PEG A 1 401 401 PEG PEG . C 3 HYO A 1 402 501 HYO LIG . D 4 NI A 1 403 601 NI NI . E 5 OGA A 1 404 701 OGA OGA . F 6 EDO A 1 405 1 EDO EDO . G 6 EDO A 1 406 7 EDO EDO . H 7 SR A 1 407 1 SR SR . I 8 UNX A 1 408 1 UNX UNX . J 8 UNX A 1 409 2 UNX UNX . K 9 HOH A 1 501 208 HOH HOH . K 9 HOH A 2 502 198 HOH HOH . K 9 HOH A 3 503 243 HOH HOH . K 9 HOH A 4 504 229 HOH HOH . K 9 HOH A 5 505 111 HOH HOH . K 9 HOH A 6 506 128 HOH HOH . K 9 HOH A 7 507 151 HOH HOH . K 9 HOH A 8 508 216 HOH HOH . K 9 HOH A 9 509 56 HOH HOH . K 9 HOH A 10 510 140 HOH HOH . K 9 HOH A 11 511 102 HOH HOH . K 9 HOH A 12 512 1 HOH HOH . K 9 HOH A 13 513 9 HOH HOH . K 9 HOH A 14 514 279 HOH HOH . K 9 HOH A 15 515 107 HOH HOH . K 9 HOH A 16 516 2 HOH HOH . K 9 HOH A 17 517 19 HOH HOH . K 9 HOH A 18 518 73 HOH HOH . K 9 HOH A 19 519 113 HOH HOH . K 9 HOH A 20 520 40 HOH HOH . K 9 HOH A 21 521 148 HOH HOH . K 9 HOH A 22 522 33 HOH HOH . K 9 HOH A 23 523 49 HOH HOH . K 9 HOH A 24 524 74 HOH HOH . K 9 HOH A 25 525 114 HOH HOH . K 9 HOH A 26 526 24 HOH HOH . K 9 HOH A 27 527 15 HOH HOH . K 9 HOH A 28 528 72 HOH HOH . K 9 HOH A 29 529 34 HOH HOH . K 9 HOH A 30 530 18 HOH HOH . K 9 HOH A 31 531 69 HOH HOH . K 9 HOH A 32 532 41 HOH HOH . K 9 HOH A 33 533 29 HOH HOH . K 9 HOH A 34 534 60 HOH HOH . K 9 HOH A 35 535 10 HOH HOH . K 9 HOH A 36 536 46 HOH HOH . K 9 HOH A 37 537 90 HOH HOH . K 9 HOH A 38 538 45 HOH HOH . K 9 HOH A 39 539 94 HOH HOH . K 9 HOH A 40 540 180 HOH HOH . K 9 HOH A 41 541 35 HOH HOH . K 9 HOH A 42 542 23 HOH HOH . K 9 HOH A 43 543 130 HOH HOH . K 9 HOH A 44 544 93 HOH HOH . K 9 HOH A 45 545 61 HOH HOH . K 9 HOH A 46 546 20 HOH HOH . K 9 HOH A 47 547 241 HOH HOH . K 9 HOH A 48 548 71 HOH HOH . K 9 HOH A 49 549 27 HOH HOH . K 9 HOH A 50 550 21 HOH HOH . K 9 HOH A 51 551 268 HOH HOH . K 9 HOH A 52 552 16 HOH HOH . K 9 HOH A 53 553 157 HOH HOH . K 9 HOH A 54 554 139 HOH HOH . K 9 HOH A 55 555 79 HOH HOH . K 9 HOH A 56 556 77 HOH HOH . K 9 HOH A 57 557 59 HOH HOH . K 9 HOH A 58 558 26 HOH HOH . K 9 HOH A 59 559 86 HOH HOH . K 9 HOH A 60 560 96 HOH HOH . K 9 HOH A 61 561 75 HOH HOH . K 9 HOH A 62 562 47 HOH HOH . K 9 HOH A 63 563 7 HOH HOH . K 9 HOH A 64 564 110 HOH HOH . K 9 HOH A 65 565 8 HOH HOH . K 9 HOH A 66 566 43 HOH HOH . K 9 HOH A 67 567 122 HOH HOH . K 9 HOH A 68 568 133 HOH HOH . K 9 HOH A 69 569 124 HOH HOH . K 9 HOH A 70 570 14 HOH HOH . K 9 HOH A 71 571 32 HOH HOH . K 9 HOH A 72 572 117 HOH HOH . K 9 HOH A 73 573 258 HOH HOH . K 9 HOH A 74 574 3 HOH HOH . K 9 HOH A 75 575 213 HOH HOH . K 9 HOH A 76 576 85 HOH HOH . K 9 HOH A 77 577 119 HOH HOH . K 9 HOH A 78 578 212 HOH HOH . K 9 HOH A 79 579 91 HOH HOH . K 9 HOH A 80 580 186 HOH HOH . K 9 HOH A 81 581 66 HOH HOH . K 9 HOH A 82 582 136 HOH HOH . K 9 HOH A 83 583 30 HOH HOH . K 9 HOH A 84 584 65 HOH HOH . K 9 HOH A 85 585 31 HOH HOH . K 9 HOH A 86 586 155 HOH HOH . K 9 HOH A 87 587 76 HOH HOH . K 9 HOH A 88 588 22 HOH HOH . K 9 HOH A 89 589 287 HOH HOH . K 9 HOH A 90 590 70 HOH HOH . K 9 HOH A 91 591 53 HOH HOH . K 9 HOH A 92 592 12 HOH HOH . K 9 HOH A 93 593 11 HOH HOH . K 9 HOH A 94 594 25 HOH HOH . K 9 HOH A 95 595 87 HOH HOH . K 9 HOH A 96 596 127 HOH HOH . K 9 HOH A 97 597 152 HOH HOH . K 9 HOH A 98 598 5 HOH HOH . K 9 HOH A 99 599 37 HOH HOH . K 9 HOH A 100 600 261 HOH HOH . K 9 HOH A 101 601 163 HOH HOH . K 9 HOH A 102 602 149 HOH HOH . K 9 HOH A 103 603 39 HOH HOH . K 9 HOH A 104 604 36 HOH HOH . K 9 HOH A 105 605 134 HOH HOH . K 9 HOH A 106 606 100 HOH HOH . K 9 HOH A 107 607 109 HOH HOH . K 9 HOH A 108 608 115 HOH HOH . K 9 HOH A 109 609 57 HOH HOH . K 9 HOH A 110 610 52 HOH HOH . K 9 HOH A 111 611 78 HOH HOH . K 9 HOH A 112 612 283 HOH HOH . K 9 HOH A 113 613 106 HOH HOH . K 9 HOH A 114 614 118 HOH HOH . K 9 HOH A 115 615 38 HOH HOH . K 9 HOH A 116 616 48 HOH HOH . K 9 HOH A 117 617 255 HOH HOH . K 9 HOH A 118 618 88 HOH HOH . K 9 HOH A 119 619 146 HOH HOH . K 9 HOH A 120 620 211 HOH HOH . K 9 HOH A 121 621 278 HOH HOH . K 9 HOH A 122 622 259 HOH HOH . K 9 HOH A 123 623 160 HOH HOH . K 9 HOH A 124 624 165 HOH HOH . K 9 HOH A 125 625 4 HOH HOH . K 9 HOH A 126 626 67 HOH HOH . K 9 HOH A 127 627 227 HOH HOH . K 9 HOH A 128 628 129 HOH HOH . K 9 HOH A 129 629 246 HOH HOH . K 9 HOH A 130 630 54 HOH HOH . K 9 HOH A 131 631 55 HOH HOH . K 9 HOH A 132 632 64 HOH HOH . K 9 HOH A 133 633 280 HOH HOH . K 9 HOH A 134 634 285 HOH HOH . K 9 HOH A 135 635 181 HOH HOH . K 9 HOH A 136 636 98 HOH HOH . K 9 HOH A 137 637 89 HOH HOH . K 9 HOH A 138 638 50 HOH HOH . K 9 HOH A 139 639 103 HOH HOH . K 9 HOH A 140 640 205 HOH HOH . K 9 HOH A 141 641 6 HOH HOH . K 9 HOH A 142 642 58 HOH HOH . K 9 HOH A 143 643 168 HOH HOH . K 9 HOH A 144 644 92 HOH HOH . K 9 HOH A 145 645 226 HOH HOH . K 9 HOH A 146 646 42 HOH HOH . K 9 HOH A 147 647 104 HOH HOH . K 9 HOH A 148 648 182 HOH HOH . K 9 HOH A 149 649 81 HOH HOH . K 9 HOH A 150 650 237 HOH HOH . K 9 HOH A 151 651 277 HOH HOH . K 9 HOH A 152 652 28 HOH HOH . K 9 HOH A 153 653 215 HOH HOH . K 9 HOH A 154 654 164 HOH HOH . K 9 HOH A 155 655 260 HOH HOH . K 9 HOH A 156 656 217 HOH HOH . K 9 HOH A 157 657 175 HOH HOH . K 9 HOH A 158 658 240 HOH HOH . K 9 HOH A 159 659 101 HOH HOH . K 9 HOH A 160 660 17 HOH HOH . K 9 HOH A 161 661 95 HOH HOH . K 9 HOH A 162 662 199 HOH HOH . K 9 HOH A 163 663 275 HOH HOH . K 9 HOH A 164 664 126 HOH HOH . K 9 HOH A 165 665 105 HOH HOH . K 9 HOH A 166 666 158 HOH HOH . K 9 HOH A 167 667 288 HOH HOH . K 9 HOH A 168 668 132 HOH HOH . K 9 HOH A 169 669 195 HOH HOH . K 9 HOH A 170 670 82 HOH HOH . K 9 HOH A 171 671 266 HOH HOH . K 9 HOH A 172 672 153 HOH HOH . K 9 HOH A 173 673 80 HOH HOH . K 9 HOH A 174 674 286 HOH HOH . K 9 HOH A 175 675 188 HOH HOH . K 9 HOH A 176 676 44 HOH HOH . K 9 HOH A 177 677 267 HOH HOH . K 9 HOH A 178 678 221 HOH HOH . K 9 HOH A 179 679 272 HOH HOH . K 9 HOH A 180 680 274 HOH HOH . K 9 HOH A 181 681 145 HOH HOH . K 9 HOH A 182 682 282 HOH HOH . K 9 HOH A 183 683 281 HOH HOH . K 9 HOH A 184 684 197 HOH HOH . K 9 HOH A 185 685 84 HOH HOH . K 9 HOH A 186 686 150 HOH HOH . K 9 HOH A 187 687 271 HOH HOH . K 9 HOH A 188 688 121 HOH HOH . K 9 HOH A 189 689 62 HOH HOH . K 9 HOH A 190 690 196 HOH HOH . K 9 HOH A 191 691 171 HOH HOH . K 9 HOH A 192 692 232 HOH HOH . K 9 HOH A 193 693 97 HOH HOH . K 9 HOH A 194 694 220 HOH HOH . K 9 HOH A 195 695 161 HOH HOH . K 9 HOH A 196 696 63 HOH HOH . K 9 HOH A 197 697 99 HOH HOH . K 9 HOH A 198 698 269 HOH HOH . K 9 HOH A 199 699 224 HOH HOH . K 9 HOH A 200 700 276 HOH HOH . K 9 HOH A 201 701 185 HOH HOH . K 9 HOH A 202 702 270 HOH HOH . K 9 HOH A 203 703 116 HOH HOH . K 9 HOH A 204 704 162 HOH HOH . K 9 HOH A 205 705 273 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OGA . . . E 5 4.725 4.759 -0.097 1 31.87 ? C1 OGA 404 A 1 HETATM 2 C C2 OGA . . . E 5 4.598 6.181 0.336 1 31.09 ? C2 OGA 404 A 1 HETATM 3 C C4 OGA . . . E 5 5.633 8.221 1.155 1 29.32 ? C4 OGA 404 A 1 HETATM 4 C C5 OGA . . . E 5 6.986 8.957 1.098 1 29.11 ? C5 OGA 404 A 1 HETATM 5 O O1 OGA . . . E 5 5.871 4.347 -0.502 1 32.65 ? O1 OGA 404 A 1 HETATM 6 O O2 OGA . . . E 5 3.723 4.011 0.013 1 31.52 ? O2 OGA 404 A 1 HETATM 7 O O2' OGA . . . E 5 3.55 6.693 0.525 1 31.36 ? O2' OGA 404 A 1 HETATM 8 O O3 OGA . . . E 5 7.19 9.961 1.81 1 29.3 ? O3 OGA 404 A 1 HETATM 9 N N1 OGA . . . E 5 5.823 6.885 0.637 1 30.03 ? N1 OGA 404 A 1 HETATM 10 O O4 OGA . . . E 5 7.893 8.51 0.39 1 28.87 ? O4 OGA 404 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 10 #