data_6TTT # _model_server_result.job_id zlsgmWTGW1dXPVcNT7WWlQ _model_server_result.datetime_utc '2025-03-30 17:40:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ttt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 6TTT # _exptl.entry_id 6TTT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 294.267 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-~{N}-methyl-3,4-bis(oxidanyl)oxolane-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6TTT _cell.length_a 64.05 _cell.length_b 64.05 _cell.length_c 225.67 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TTT _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 338 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 338 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 388 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 388 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.003 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C11 H14 N6 O4' _chem_comp.formula_weight 294.267 _chem_comp.id NWQ _chem_comp.mon_nstd_flag . _chem_comp.name (2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-~{N}-methyl-3,4-bis(oxidanyl)oxolane-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 N15 NWQ sing 243 n n O25 C14 NWQ doub 244 n n N04 C05 NWQ doub 245 n y N04 C03 NWQ sing 246 n y C05 N06 NWQ sing 247 n y N01 C02 NWQ sing 248 n n C14 N15 NWQ sing 249 n n C14 C13 NWQ sing 250 n n C03 C02 NWQ doub 251 n y C03 C26 NWQ sing 252 n y N06 C07 NWQ sing 253 n n N06 C26 NWQ sing 254 n y C02 N29 NWQ sing 255 n y C08 C09 NWQ sing 256 n n C08 O11 NWQ sing 257 n n C08 C07 NWQ sing 258 n n O12 C13 NWQ sing 259 n n O12 C07 NWQ sing 260 n n C13 C09 NWQ sing 261 n n C09 O10 NWQ sing 262 n n C26 N27 NWQ doub 263 n y N29 C28 NWQ doub 264 n y N27 C28 NWQ sing 265 n y C13 H1 NWQ sing 266 n n C28 H2 NWQ sing 267 n n C05 H3 NWQ sing 268 n n C07 H4 NWQ sing 269 n n C08 H5 NWQ sing 270 n n C09 H6 NWQ sing 271 n n C16 H7 NWQ sing 272 n n C16 H8 NWQ sing 273 n n C16 H9 NWQ sing 274 n n N01 H10 NWQ sing 275 n n N01 H11 NWQ sing 276 n n N15 H12 NWQ sing 277 n n O10 H13 NWQ sing 278 n n O11 H14 NWQ sing 279 n n # _atom_sites.entry_id 6TTT _atom_sites.fract_transf_matrix[1][1] 0.015613 _atom_sites.fract_transf_matrix[1][2] 0.009014 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018028 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004431 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NWQ A 1 601 601 NWQ LIG . D 4 ACT B 1 501 401 ACT ACT . E 5 HOH A 1 701 68 HOH HOH . E 5 HOH A 2 702 122 HOH HOH . E 5 HOH A 3 703 84 HOH HOH . E 5 HOH A 4 704 123 HOH HOH . E 5 HOH A 5 705 8 HOH HOH . E 5 HOH A 6 706 24 HOH HOH . E 5 HOH A 7 707 13 HOH HOH . E 5 HOH A 8 708 75 HOH HOH . E 5 HOH A 9 709 87 HOH HOH . E 5 HOH A 10 710 99 HOH HOH . E 5 HOH A 11 711 70 HOH HOH . E 5 HOH A 12 712 14 HOH HOH . E 5 HOH A 13 713 56 HOH HOH . E 5 HOH A 14 714 104 HOH HOH . E 5 HOH A 15 715 7 HOH HOH . E 5 HOH A 16 716 38 HOH HOH . E 5 HOH A 17 717 45 HOH HOH . E 5 HOH A 18 718 28 HOH HOH . E 5 HOH A 19 719 30 HOH HOH . E 5 HOH A 20 720 26 HOH HOH . E 5 HOH A 21 721 132 HOH HOH . E 5 HOH A 22 722 133 HOH HOH . E 5 HOH A 23 723 16 HOH HOH . E 5 HOH A 24 724 34 HOH HOH . E 5 HOH A 25 725 49 HOH HOH . E 5 HOH A 26 726 18 HOH HOH . E 5 HOH A 27 727 125 HOH HOH . E 5 HOH A 28 728 63 HOH HOH . E 5 HOH A 29 729 54 HOH HOH . E 5 HOH A 30 730 102 HOH HOH . E 5 HOH A 31 731 82 HOH HOH . E 5 HOH A 32 732 126 HOH HOH . E 5 HOH A 33 733 47 HOH HOH . E 5 HOH A 34 734 80 HOH HOH . E 5 HOH A 35 735 32 HOH HOH . E 5 HOH A 36 736 51 HOH HOH . E 5 HOH A 37 737 21 HOH HOH . E 5 HOH A 38 738 131 HOH HOH . E 5 HOH A 39 739 37 HOH HOH . E 5 HOH A 40 740 136 HOH HOH . E 5 HOH A 41 741 139 HOH HOH . E 5 HOH A 42 742 165 HOH HOH . E 5 HOH A 43 743 120 HOH HOH . E 5 HOH A 44 744 154 HOH HOH . E 5 HOH A 45 745 151 HOH HOH . E 5 HOH A 46 746 146 HOH HOH . E 5 HOH A 47 747 147 HOH HOH . E 5 HOH A 48 748 141 HOH HOH . E 5 HOH A 49 749 155 HOH HOH . E 5 HOH A 50 750 164 HOH HOH . E 5 HOH A 51 751 149 HOH HOH . E 5 HOH A 52 752 158 HOH HOH . E 5 HOH A 53 753 163 HOH HOH . E 5 HOH A 54 754 144 HOH HOH . F 5 HOH B 1 601 36 HOH HOH . F 5 HOH B 2 602 116 HOH HOH . F 5 HOH B 3 603 42 HOH HOH . F 5 HOH B 4 604 91 HOH HOH . F 5 HOH B 5 605 33 HOH HOH . F 5 HOH B 6 606 55 HOH HOH . F 5 HOH B 7 607 83 HOH HOH . F 5 HOH B 8 608 81 HOH HOH . F 5 HOH B 9 609 89 HOH HOH . F 5 HOH B 10 610 27 HOH HOH . F 5 HOH B 11 611 17 HOH HOH . F 5 HOH B 12 612 2 HOH HOH . F 5 HOH B 13 613 6 HOH HOH . F 5 HOH B 14 614 88 HOH HOH . F 5 HOH B 15 615 121 HOH HOH . F 5 HOH B 16 616 3 HOH HOH . F 5 HOH B 17 617 106 HOH HOH . F 5 HOH B 18 618 40 HOH HOH . F 5 HOH B 19 619 29 HOH HOH . F 5 HOH B 20 620 50 HOH HOH . F 5 HOH B 21 621 35 HOH HOH . F 5 HOH B 22 622 62 HOH HOH . F 5 HOH B 23 623 109 HOH HOH . F 5 HOH B 24 624 5 HOH HOH . F 5 HOH B 25 625 69 HOH HOH . F 5 HOH B 26 626 59 HOH HOH . F 5 HOH B 27 627 11 HOH HOH . F 5 HOH B 28 628 57 HOH HOH . F 5 HOH B 29 629 73 HOH HOH . F 5 HOH B 30 630 76 HOH HOH . F 5 HOH B 31 631 46 HOH HOH . F 5 HOH B 32 632 148 HOH HOH . F 5 HOH B 33 633 67 HOH HOH . F 5 HOH B 34 634 12 HOH HOH . F 5 HOH B 35 635 39 HOH HOH . F 5 HOH B 36 636 1 HOH HOH . F 5 HOH B 37 637 4 HOH HOH . F 5 HOH B 38 638 53 HOH HOH . F 5 HOH B 39 639 153 HOH HOH . F 5 HOH B 40 640 65 HOH HOH . F 5 HOH B 41 641 25 HOH HOH . F 5 HOH B 42 642 72 HOH HOH . F 5 HOH B 43 643 23 HOH HOH . F 5 HOH B 44 644 92 HOH HOH . F 5 HOH B 45 645 118 HOH HOH . F 5 HOH B 46 646 43 HOH HOH . F 5 HOH B 47 647 22 HOH HOH . F 5 HOH B 48 648 15 HOH HOH . F 5 HOH B 49 649 103 HOH HOH . F 5 HOH B 50 650 20 HOH HOH . F 5 HOH B 51 651 77 HOH HOH . F 5 HOH B 52 652 19 HOH HOH . F 5 HOH B 53 653 31 HOH HOH . F 5 HOH B 54 654 93 HOH HOH . F 5 HOH B 55 655 105 HOH HOH . F 5 HOH B 56 656 74 HOH HOH . F 5 HOH B 57 657 108 HOH HOH . F 5 HOH B 58 658 10 HOH HOH . F 5 HOH B 59 659 64 HOH HOH . F 5 HOH B 60 660 41 HOH HOH . F 5 HOH B 61 661 98 HOH HOH . F 5 HOH B 62 662 113 HOH HOH . F 5 HOH B 63 663 114 HOH HOH . F 5 HOH B 64 664 97 HOH HOH . F 5 HOH B 65 665 95 HOH HOH . F 5 HOH B 66 666 143 HOH HOH . F 5 HOH B 67 667 58 HOH HOH . F 5 HOH B 68 668 52 HOH HOH . F 5 HOH B 69 669 9 HOH HOH . F 5 HOH B 70 670 115 HOH HOH . F 5 HOH B 71 671 66 HOH HOH . F 5 HOH B 72 672 135 HOH HOH . F 5 HOH B 73 673 79 HOH HOH . F 5 HOH B 74 674 71 HOH HOH . F 5 HOH B 75 675 112 HOH HOH . F 5 HOH B 76 676 119 HOH HOH . F 5 HOH B 77 677 100 HOH HOH . F 5 HOH B 78 678 86 HOH HOH . F 5 HOH B 79 679 124 HOH HOH . F 5 HOH B 80 680 110 HOH HOH . F 5 HOH B 81 681 48 HOH HOH . F 5 HOH B 82 682 111 HOH HOH . F 5 HOH B 83 683 107 HOH HOH . F 5 HOH B 84 684 44 HOH HOH . F 5 HOH B 85 685 159 HOH HOH . F 5 HOH B 86 686 129 HOH HOH . F 5 HOH B 87 687 130 HOH HOH . F 5 HOH B 88 688 117 HOH HOH . F 5 HOH B 89 689 61 HOH HOH . F 5 HOH B 90 690 94 HOH HOH . F 5 HOH B 91 691 145 HOH HOH . F 5 HOH B 92 692 140 HOH HOH . F 5 HOH B 93 693 127 HOH HOH . F 5 HOH B 94 694 96 HOH HOH . F 5 HOH B 95 695 85 HOH HOH . F 5 HOH B 96 696 142 HOH HOH . F 5 HOH B 97 697 90 HOH HOH . F 5 HOH B 98 698 157 HOH HOH . F 5 HOH B 99 699 150 HOH HOH . F 5 HOH B 100 700 160 HOH HOH . F 5 HOH B 101 701 134 HOH HOH . F 5 HOH B 102 702 156 HOH HOH . F 5 HOH B 103 703 137 HOH HOH . F 5 HOH B 104 704 152 HOH HOH . F 5 HOH B 105 705 161 HOH HOH . F 5 HOH B 106 706 138 HOH HOH . F 5 HOH B 107 707 162 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 NWQ . . . C 3 43.19 -34.235 25.983 1 58.1 ? C13 NWQ 601 A 1 HETATM 2 C C26 NWQ . . . C 3 41.272 -38.293 26.175 1 49.72 ? C26 NWQ 601 A 1 HETATM 3 C C28 NWQ . . . C 3 39.877 -39.34 27.77 1 48.53 ? C28 NWQ 601 A 1 HETATM 4 C C02 NWQ . . . C 3 39.844 -40.146 25.595 1 48.18 ? C02 NWQ 601 A 1 HETATM 5 C C03 NWQ . . . C 3 40.808 -39.162 25.219 1 46.94 ? C03 NWQ 601 A 1 HETATM 6 C C05 NWQ . . . C 3 42.277 -37.81 24.291 1 55.53 ? C05 NWQ 601 A 1 HETATM 7 C C07 NWQ . . . C 3 42.884 -36.457 26.146 1 54.75 ? C07 NWQ 601 A 1 HETATM 8 C C08 NWQ . . . C 3 44.343 -36.219 25.627 1 64.01 ? C08 NWQ 601 A 1 HETATM 9 C C09 NWQ . . . C 3 44.617 -35.091 26.08 1 61.85 ? C09 NWQ 601 A 1 HETATM 10 C C14 NWQ . . . C 3 43.194 -33.297 24.768 1 59.79 ? C14 NWQ 601 A 1 HETATM 11 C C16 NWQ . . . C 3 43.152 -31.113 23.585 1 65.91 ? C16 NWQ 601 A 1 HETATM 12 N N01 NWQ . . . C 3 39.303 -41.092 24.635 1 51.97 ? N01 NWQ 601 A 1 HETATM 13 N N04 NWQ . . . C 3 41.448 -38.834 24.061 1 46.46 ? N04 NWQ 601 A 1 HETATM 14 N N06 NWQ . . . C 3 42.212 -37.447 25.561 1 52.62 ? N06 NWQ 601 A 1 HETATM 15 N N15 NWQ . . . C 3 43.155 -31.855 24.874 1 63.5 ? N15 NWQ 601 A 1 HETATM 16 N N27 NWQ . . . C 3 40.792 -38.405 27.452 1 47.74 ? N27 NWQ 601 A 1 HETATM 17 N N29 NWQ . . . C 3 39.419 -40.174 26.87 1 48.93 ? N29 NWQ 601 A 1 HETATM 18 O O10 NWQ . . . C 3 44.995 -35.218 27.48 1 58.09 ? O10 NWQ 601 A 1 HETATM 19 O O11 NWQ . . . C 3 45.304 -37.278 26.123 1 62.12 ? O11 NWQ 601 A 1 HETATM 20 O O12 NWQ . . . C 3 42.261 -35.088 25.84 1 59.89 ? O12 NWQ 601 A 1 HETATM 21 O O25 NWQ . . . C 3 43.229 -33.758 23.689 1 65.32 ? O25 NWQ 601 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 59 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #