data_6TU1 # _model_server_result.job_id zQRpGovZUfdJ3lvREbbo8g _model_server_result.datetime_utc '2025-04-06 05:15:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tu1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 6TU1 # _exptl.entry_id 6TU1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 280.283 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{R},3~{R},4~{R},5~{R})-2-[(6-aminopurin-9-yl)methyl]-5-azanyl-oxane-3,4-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6TU1 _cell.length_a 64.21 _cell.length_b 64.21 _cell.length_c 226.57 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TU1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 338 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 338 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 388 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 388 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.055 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C11 H16 N6 O3' _chem_comp.formula_weight 280.283 _chem_comp.id NXB _chem_comp.mon_nstd_flag . _chem_comp.name (2~{R},3~{R},4~{R},5~{R})-2-[(6-aminopurin-9-yl)methyl]-5-azanyl-oxane-3,4-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N15 C16 NXB doub 243 n y N15 C14 NXB sing 244 n y C16 N07 NXB sing 245 n y C03 C02 NXB sing 246 n n C03 O04 NXB sing 247 n n C02 C19 NXB sing 248 n n C02 N01 NXB sing 249 n n N13 C12 NXB sing 250 n n C19 C17 NXB sing 251 n n C19 O20 NXB sing 252 n n C14 C12 NXB doub 253 n y C14 C08 NXB sing 254 n y C05 O04 NXB sing 255 n n C05 C17 NXB sing 256 n n C05 C06 NXB sing 257 n n N07 C08 NXB sing 258 n y N07 C06 NXB sing 259 n n C12 N11 NXB sing 260 n y C17 O18 NXB sing 261 n n C08 N09 NXB doub 262 n y N11 C10 NXB doub 263 n y N09 C10 NXB sing 264 n y C10 H1 NXB sing 265 n n C17 H2 NXB sing 266 n n C02 H3 NXB sing 267 n n C03 H4 NXB sing 268 n n C03 H5 NXB sing 269 n n C05 H6 NXB sing 270 n n C06 H7 NXB sing 271 n n C06 H8 NXB sing 272 n n C16 H9 NXB sing 273 n n C19 H10 NXB sing 274 n n N01 H11 NXB sing 275 n n N01 H12 NXB sing 276 n n N13 H14 NXB sing 277 n n N13 H15 NXB sing 278 n n O18 H16 NXB sing 279 n n O20 H17 NXB sing 280 n n # _atom_sites.entry_id 6TU1 _atom_sites.fract_transf_matrix[1][1] 0.015574 _atom_sites.fract_transf_matrix[1][2] 0.008992 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017983 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004414 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NXB A 1 601 601 NXB LIG . D 4 ACT B 1 501 401 ACT ACT . E 5 HOH A 1 701 73 HOH HOH . E 5 HOH A 2 702 106 HOH HOH . E 5 HOH A 3 703 87 HOH HOH . E 5 HOH A 4 704 107 HOH HOH . E 5 HOH A 5 705 35 HOH HOH . E 5 HOH A 6 706 17 HOH HOH . E 5 HOH A 7 707 31 HOH HOH . E 5 HOH A 8 708 70 HOH HOH . E 5 HOH A 9 709 86 HOH HOH . E 5 HOH A 10 710 96 HOH HOH . E 5 HOH A 11 711 34 HOH HOH . E 5 HOH A 12 712 75 HOH HOH . E 5 HOH A 13 713 29 HOH HOH . E 5 HOH A 14 714 15 HOH HOH . E 5 HOH A 15 715 16 HOH HOH . E 5 HOH A 16 716 9 HOH HOH . E 5 HOH A 17 717 18 HOH HOH . E 5 HOH A 18 718 132 HOH HOH . E 5 HOH A 19 719 69 HOH HOH . E 5 HOH A 20 720 103 HOH HOH . E 5 HOH A 21 721 13 HOH HOH . E 5 HOH A 22 722 23 HOH HOH . E 5 HOH A 23 723 62 HOH HOH . E 5 HOH A 24 724 5 HOH HOH . E 5 HOH A 25 725 153 HOH HOH . E 5 HOH A 26 726 56 HOH HOH . E 5 HOH A 27 727 51 HOH HOH . E 5 HOH A 28 728 3 HOH HOH . E 5 HOH A 29 729 152 HOH HOH . E 5 HOH A 30 730 120 HOH HOH . E 5 HOH A 31 731 25 HOH HOH . E 5 HOH A 32 732 38 HOH HOH . E 5 HOH A 33 733 102 HOH HOH . E 5 HOH A 34 734 104 HOH HOH . E 5 HOH A 35 735 30 HOH HOH . E 5 HOH A 36 736 32 HOH HOH . E 5 HOH A 37 737 114 HOH HOH . E 5 HOH A 38 738 137 HOH HOH . E 5 HOH A 39 739 43 HOH HOH . E 5 HOH A 40 740 82 HOH HOH . E 5 HOH A 41 741 26 HOH HOH . E 5 HOH A 42 742 66 HOH HOH . E 5 HOH A 43 743 122 HOH HOH . E 5 HOH A 44 744 126 HOH HOH . E 5 HOH A 45 745 76 HOH HOH . E 5 HOH A 46 746 156 HOH HOH . E 5 HOH A 47 747 68 HOH HOH . E 5 HOH A 48 748 145 HOH HOH . E 5 HOH A 49 749 63 HOH HOH . E 5 HOH A 50 750 81 HOH HOH . E 5 HOH A 51 751 95 HOH HOH . E 5 HOH A 52 752 108 HOH HOH . E 5 HOH A 53 753 121 HOH HOH . E 5 HOH A 54 754 118 HOH HOH . E 5 HOH A 55 755 55 HOH HOH . E 5 HOH A 56 756 57 HOH HOH . E 5 HOH A 57 757 127 HOH HOH . E 5 HOH A 58 758 100 HOH HOH . E 5 HOH A 59 759 94 HOH HOH . E 5 HOH A 60 760 130 HOH HOH . E 5 HOH A 61 761 85 HOH HOH . E 5 HOH A 62 762 158 HOH HOH . E 5 HOH A 63 763 177 HOH HOH . E 5 HOH A 64 764 90 HOH HOH . E 5 HOH A 65 765 135 HOH HOH . E 5 HOH A 66 766 173 HOH HOH . E 5 HOH A 67 767 149 HOH HOH . E 5 HOH A 68 768 148 HOH HOH . E 5 HOH A 69 769 169 HOH HOH . E 5 HOH A 70 770 162 HOH HOH . F 5 HOH B 1 601 129 HOH HOH . F 5 HOH B 2 602 164 HOH HOH . F 5 HOH B 3 603 147 HOH HOH . F 5 HOH B 4 604 45 HOH HOH . F 5 HOH B 5 605 83 HOH HOH . F 5 HOH B 6 606 36 HOH HOH . F 5 HOH B 7 607 98 HOH HOH . F 5 HOH B 8 608 113 HOH HOH . F 5 HOH B 9 609 10 HOH HOH . F 5 HOH B 10 610 166 HOH HOH . F 5 HOH B 11 611 50 HOH HOH . F 5 HOH B 12 612 1 HOH HOH . F 5 HOH B 13 613 74 HOH HOH . F 5 HOH B 14 614 99 HOH HOH . F 5 HOH B 15 615 19 HOH HOH . F 5 HOH B 16 616 115 HOH HOH . F 5 HOH B 17 617 24 HOH HOH . F 5 HOH B 18 618 138 HOH HOH . F 5 HOH B 19 619 151 HOH HOH . F 5 HOH B 20 620 49 HOH HOH . F 5 HOH B 21 621 12 HOH HOH . F 5 HOH B 22 622 7 HOH HOH . F 5 HOH B 23 623 2 HOH HOH . F 5 HOH B 24 624 60 HOH HOH . F 5 HOH B 25 625 117 HOH HOH . F 5 HOH B 26 626 54 HOH HOH . F 5 HOH B 27 627 4 HOH HOH . F 5 HOH B 28 628 22 HOH HOH . F 5 HOH B 29 629 46 HOH HOH . F 5 HOH B 30 630 78 HOH HOH . F 5 HOH B 31 631 88 HOH HOH . F 5 HOH B 32 632 11 HOH HOH . F 5 HOH B 33 633 6 HOH HOH . F 5 HOH B 34 634 105 HOH HOH . F 5 HOH B 35 635 33 HOH HOH . F 5 HOH B 36 636 40 HOH HOH . F 5 HOH B 37 637 14 HOH HOH . F 5 HOH B 38 638 37 HOH HOH . F 5 HOH B 39 639 91 HOH HOH . F 5 HOH B 40 640 64 HOH HOH . F 5 HOH B 41 641 21 HOH HOH . F 5 HOH B 42 642 8 HOH HOH . F 5 HOH B 43 643 93 HOH HOH . F 5 HOH B 44 644 39 HOH HOH . F 5 HOH B 45 645 133 HOH HOH . F 5 HOH B 46 646 48 HOH HOH . F 5 HOH B 47 647 61 HOH HOH . F 5 HOH B 48 648 65 HOH HOH . F 5 HOH B 49 649 110 HOH HOH . F 5 HOH B 50 650 77 HOH HOH . F 5 HOH B 51 651 84 HOH HOH . F 5 HOH B 52 652 146 HOH HOH . F 5 HOH B 53 653 111 HOH HOH . F 5 HOH B 54 654 59 HOH HOH . F 5 HOH B 55 655 97 HOH HOH . F 5 HOH B 56 656 47 HOH HOH . F 5 HOH B 57 657 172 HOH HOH . F 5 HOH B 58 658 67 HOH HOH . F 5 HOH B 59 659 20 HOH HOH . F 5 HOH B 60 660 80 HOH HOH . F 5 HOH B 61 661 112 HOH HOH . F 5 HOH B 62 662 116 HOH HOH . F 5 HOH B 63 663 131 HOH HOH . F 5 HOH B 64 664 154 HOH HOH . F 5 HOH B 65 665 72 HOH HOH . F 5 HOH B 66 666 168 HOH HOH . F 5 HOH B 67 667 134 HOH HOH . F 5 HOH B 68 668 58 HOH HOH . F 5 HOH B 69 669 52 HOH HOH . F 5 HOH B 70 670 42 HOH HOH . F 5 HOH B 71 671 136 HOH HOH . F 5 HOH B 72 672 28 HOH HOH . F 5 HOH B 73 673 79 HOH HOH . F 5 HOH B 74 674 89 HOH HOH . F 5 HOH B 75 675 71 HOH HOH . F 5 HOH B 76 676 27 HOH HOH . F 5 HOH B 77 677 53 HOH HOH . F 5 HOH B 78 678 101 HOH HOH . F 5 HOH B 79 679 140 HOH HOH . F 5 HOH B 80 680 144 HOH HOH . F 5 HOH B 81 681 109 HOH HOH . F 5 HOH B 82 682 155 HOH HOH . F 5 HOH B 83 683 143 HOH HOH . F 5 HOH B 84 684 44 HOH HOH . F 5 HOH B 85 685 165 HOH HOH . F 5 HOH B 86 686 128 HOH HOH . F 5 HOH B 87 687 119 HOH HOH . F 5 HOH B 88 688 150 HOH HOH . F 5 HOH B 89 689 175 HOH HOH . F 5 HOH B 90 690 41 HOH HOH . F 5 HOH B 91 691 123 HOH HOH . F 5 HOH B 92 692 92 HOH HOH . F 5 HOH B 93 693 163 HOH HOH . F 5 HOH B 94 694 157 HOH HOH . F 5 HOH B 95 695 124 HOH HOH . F 5 HOH B 96 696 159 HOH HOH . F 5 HOH B 97 697 170 HOH HOH . F 5 HOH B 98 698 139 HOH HOH . F 5 HOH B 99 699 171 HOH HOH . F 5 HOH B 100 700 160 HOH HOH . F 5 HOH B 101 701 125 HOH HOH . F 5 HOH B 102 702 142 HOH HOH . F 5 HOH B 103 703 174 HOH HOH . F 5 HOH B 104 704 176 HOH HOH . F 5 HOH B 105 705 161 HOH HOH . F 5 HOH B 106 706 141 HOH HOH . F 5 HOH B 107 707 167 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 NXB . . . C 3 40.046 -39.136 27.769 1 44.13 ? C10 NXB 601 A 1 HETATM 2 C C17 NXB . . . C 3 44.568 -34.697 25.64 1 51.74 ? C17 NXB 601 A 1 HETATM 3 C C02 NXB . . . C 3 43.572 -32.538 24.573 1 46.92 ? C02 NXB 601 A 1 HETATM 4 C C03 NXB . . . C 3 42.375 -33.462 24.396 1 52.45 ? C03 NXB 601 A 1 HETATM 5 C C05 NXB . . . C 3 43.223 -35.289 25.286 1 43.52 ? C05 NXB 601 A 1 HETATM 6 C C06 NXB . . . C 3 42.957 -36.449 26.24 1 47.05 ? C06 NXB 601 A 1 HETATM 7 C C08 NXB . . . C 3 41.424 -38.223 26.199 1 43.22 ? C08 NXB 601 A 1 HETATM 8 C C12 NXB . . . C 3 40.047 -40.06 25.639 1 41.86 ? C12 NXB 601 A 1 HETATM 9 C C14 NXB . . . C 3 40.983 -39.154 25.231 1 41.57 ? C14 NXB 601 A 1 HETATM 10 C C16 NXB . . . C 3 42.549 -37.745 24.331 1 43.69 ? C16 NXB 601 A 1 HETATM 11 C C19 NXB . . . C 3 44.819 -33.331 24.981 1 55.28 ? C19 NXB 601 A 1 HETATM 12 N N01 NXB . . . C 3 43.243 -31.502 25.532 1 48.34 ? N01 NXB 601 A 1 HETATM 13 N N07 NXB . . . C 3 42.265 -37.529 25.559 1 46.46 ? N07 NXB 601 A 1 HETATM 14 N N09 NXB . . . C 3 40.97 -38.219 27.437 1 41.44 ? N09 NXB 601 A 1 HETATM 15 N N11 NXB . . . C 3 39.602 -40.034 26.876 1 44.35 ? N11 NXB 601 A 1 HETATM 16 N N13 NXB . . . C 3 39.537 -41.042 24.7 1 48.73 ? N13 NXB 601 A 1 HETATM 17 N N15 NXB . . . C 3 41.756 -38.809 23.972 1 41.42 ? N15 NXB 601 A 1 HETATM 18 O O04 NXB . . . C 3 42.277 -34.3 25.509 1 51.39 ? O04 NXB 601 A 1 HETATM 19 O O18 NXB . . . C 3 44.615 -34.631 27.036 1 49.79 ? O18 NXB 601 A 1 HETATM 20 O O20 NXB . . . C 3 45.599 -32.541 25.818 1 61.97 ? O20 NXB 601 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #