data_6TUZ # _model_server_result.job_id 8KJLoo_P2IoDV2-7rSM9Vg _model_server_result.datetime_utc '2024-11-16 13:29:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tuz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"EA","auth_seq_id":530}' # _entry.id 6TUZ # _exptl.entry_id 6TUZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TUZ _cell.length_a 60.425 _cell.length_b 73.141 _cell.length_c 78.88 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TUZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id EA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 A SG CYS 202 A CYS 279 1_555 A SG CYS 208 A CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? disulf ? disulf5 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf6 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf7 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 EA C1 NAG . A NAG 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 255 n n C1 O1 NAG sing 256 n n C1 O5 NAG sing 257 n n C1 H1 NAG sing 258 n n C2 C3 NAG sing 259 n n C2 N2 NAG sing 260 n n C2 H2 NAG sing 261 n n C3 C4 NAG sing 262 n n C3 O3 NAG sing 263 n n C3 H3 NAG sing 264 n n C4 C5 NAG sing 265 n n C4 O4 NAG sing 266 n n C4 H4 NAG sing 267 n n C5 C6 NAG sing 268 n n C5 O5 NAG sing 269 n n C5 H5 NAG sing 270 n n C6 O6 NAG sing 271 n n C6 H61 NAG sing 272 n n C6 H62 NAG sing 273 n n C7 C8 NAG sing 274 n n C7 N2 NAG sing 275 n n C7 O7 NAG doub 276 n n C8 H81 NAG sing 277 n n C8 H82 NAG sing 278 n n C8 H83 NAG sing 279 n n N2 HN2 NAG sing 280 n n O1 HO1 NAG sing 281 n n O3 HO3 NAG sing 282 n n O4 HO4 NAG sing 283 n n O6 HO6 NAG sing 284 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6TUZ _atom_sites.fract_transf_matrix[1][1] 0.016549 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013672 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012677 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 501 SO4 SO4 . C 2 SO4 A 1 502 502 SO4 SO4 . D 2 SO4 A 1 503 503 SO4 SO4 . E 2 SO4 A 1 504 504 SO4 SO4 . F 2 SO4 A 1 505 507 SO4 SO4 . G 3 DMS A 1 506 511 DMS DMS . H 3 DMS A 1 507 512 DMS DMS . I 3 DMS A 1 508 513 DMS DMS . J 3 DMS A 1 509 514 DMS DMS . K 4 EDO A 1 510 551 EDO EDO . L 4 EDO A 1 511 552 EDO EDO . M 4 EDO A 1 512 554 EDO EDO . N 4 EDO A 1 513 558 EDO EDO . O 4 EDO A 1 514 560 EDO EDO . P 4 EDO A 1 515 561 EDO EDO . Q 4 EDO A 1 516 565 EDO EDO . R 4 EDO A 1 517 566 EDO EDO . S 4 EDO A 1 518 567 EDO EDO . T 4 EDO A 1 519 568 EDO EDO . U 4 EDO A 1 520 569 EDO EDO . V 4 EDO A 1 521 570 EDO EDO . W 4 EDO A 1 522 571 EDO EDO . X 4 EDO A 1 523 573 EDO EDO . Y 4 EDO A 1 524 574 EDO EDO . Z 4 EDO A 1 525 576 EDO EDO . AA 4 EDO A 1 526 577 EDO EDO . BA 4 EDO A 1 527 578 EDO EDO . CA 4 EDO A 1 528 579 EDO EDO . DA 4 EDO A 1 529 580 EDO EDO . EA 5 NAG A 1 530 1000 NAG NAG . FA 6 TEP A 1 531 1 TEP DRG . GA 7 HOH A 1 601 709 HOH HOH . GA 7 HOH A 2 602 715 HOH HOH . GA 7 HOH A 3 603 708 HOH HOH . GA 7 HOH A 4 604 839 HOH HOH . GA 7 HOH A 5 605 686 HOH HOH . GA 7 HOH A 6 606 702 HOH HOH . GA 7 HOH A 7 607 699 HOH HOH . GA 7 HOH A 8 608 666 HOH HOH . GA 7 HOH A 9 609 706 HOH HOH . GA 7 HOH A 10 610 675 HOH HOH . GA 7 HOH A 11 611 728 HOH HOH . GA 7 HOH A 12 612 671 HOH HOH . GA 7 HOH A 13 613 650 HOH HOH . GA 7 HOH A 14 614 641 HOH HOH . GA 7 HOH A 15 615 763 HOH HOH . GA 7 HOH A 16 616 767 HOH HOH . GA 7 HOH A 17 617 623 HOH HOH . GA 7 HOH A 18 618 790 HOH HOH . GA 7 HOH A 19 619 716 HOH HOH . GA 7 HOH A 20 620 628 HOH HOH . GA 7 HOH A 21 621 667 HOH HOH . GA 7 HOH A 22 622 619 HOH HOH . GA 7 HOH A 23 623 916 HOH HOH . GA 7 HOH A 24 624 889 HOH HOH . GA 7 HOH A 25 625 768 HOH HOH . GA 7 HOH A 26 626 747 HOH HOH . GA 7 HOH A 27 627 753 HOH HOH . GA 7 HOH A 28 628 712 HOH HOH . GA 7 HOH A 29 629 621 HOH HOH . GA 7 HOH A 30 630 760 HOH HOH . GA 7 HOH A 31 631 771 HOH HOH . GA 7 HOH A 32 632 632 HOH HOH . GA 7 HOH A 33 633 766 HOH HOH . GA 7 HOH A 34 634 838 HOH HOH . GA 7 HOH A 35 635 721 HOH HOH . GA 7 HOH A 36 636 802 HOH HOH . GA 7 HOH A 37 637 770 HOH HOH . GA 7 HOH A 38 638 723 HOH HOH . GA 7 HOH A 39 639 756 HOH HOH . GA 7 HOH A 40 640 811 HOH HOH . GA 7 HOH A 41 641 751 HOH HOH . GA 7 HOH A 42 642 738 HOH HOH . GA 7 HOH A 43 643 661 HOH HOH . GA 7 HOH A 44 644 724 HOH HOH . GA 7 HOH A 45 645 765 HOH HOH . GA 7 HOH A 46 646 739 HOH HOH . GA 7 HOH A 47 647 663 HOH HOH . GA 7 HOH A 48 648 817 HOH HOH . GA 7 HOH A 49 649 879 HOH HOH . GA 7 HOH A 50 650 678 HOH HOH . GA 7 HOH A 51 651 777 HOH HOH . GA 7 HOH A 52 652 910 HOH HOH . GA 7 HOH A 53 653 679 HOH HOH . GA 7 HOH A 54 654 793 HOH HOH . GA 7 HOH A 55 655 782 HOH HOH . GA 7 HOH A 56 656 646 HOH HOH . GA 7 HOH A 57 657 617 HOH HOH . GA 7 HOH A 58 658 917 HOH HOH . GA 7 HOH A 59 659 843 HOH HOH . GA 7 HOH A 60 660 653 HOH HOH . GA 7 HOH A 61 661 732 HOH HOH . GA 7 HOH A 62 662 737 HOH HOH . GA 7 HOH A 63 663 779 HOH HOH . GA 7 HOH A 64 664 840 HOH HOH . GA 7 HOH A 65 665 677 HOH HOH . GA 7 HOH A 66 666 788 HOH HOH . GA 7 HOH A 67 667 719 HOH HOH . GA 7 HOH A 68 668 652 HOH HOH . GA 7 HOH A 69 669 749 HOH HOH . GA 7 HOH A 70 670 869 HOH HOH . GA 7 HOH A 71 671 868 HOH HOH . GA 7 HOH A 72 672 614 HOH HOH . GA 7 HOH A 73 673 736 HOH HOH . GA 7 HOH A 74 674 772 HOH HOH . GA 7 HOH A 75 675 608 HOH HOH . GA 7 HOH A 76 676 774 HOH HOH . GA 7 HOH A 77 677 730 HOH HOH . GA 7 HOH A 78 678 874 HOH HOH . GA 7 HOH A 79 679 834 HOH HOH . GA 7 HOH A 80 680 727 HOH HOH . GA 7 HOH A 81 681 618 HOH HOH . GA 7 HOH A 82 682 829 HOH HOH . GA 7 HOH A 83 683 865 HOH HOH . GA 7 HOH A 84 684 684 HOH HOH . GA 7 HOH A 85 685 778 HOH HOH . GA 7 HOH A 86 686 696 HOH HOH . GA 7 HOH A 87 687 722 HOH HOH . GA 7 HOH A 88 688 844 HOH HOH . GA 7 HOH A 89 689 807 HOH HOH . GA 7 HOH A 90 690 805 HOH HOH . GA 7 HOH A 91 691 783 HOH HOH . GA 7 HOH A 92 692 644 HOH HOH . GA 7 HOH A 93 693 785 HOH HOH . GA 7 HOH A 94 694 624 HOH HOH . GA 7 HOH A 95 695 758 HOH HOH . GA 7 HOH A 96 696 603 HOH HOH . GA 7 HOH A 97 697 701 HOH HOH . GA 7 HOH A 98 698 731 HOH HOH . GA 7 HOH A 99 699 794 HOH HOH . GA 7 HOH A 100 700 703 HOH HOH . GA 7 HOH A 101 701 757 HOH HOH . GA 7 HOH A 102 702 726 HOH HOH . GA 7 HOH A 103 703 801 HOH HOH . GA 7 HOH A 104 704 750 HOH HOH . GA 7 HOH A 105 705 687 HOH HOH . GA 7 HOH A 106 706 755 HOH HOH . GA 7 HOH A 107 707 609 HOH HOH . GA 7 HOH A 108 708 657 HOH HOH . GA 7 HOH A 109 709 746 HOH HOH . GA 7 HOH A 110 710 740 HOH HOH . GA 7 HOH A 111 711 735 HOH HOH . GA 7 HOH A 112 712 612 HOH HOH . GA 7 HOH A 113 713 798 HOH HOH . GA 7 HOH A 114 714 803 HOH HOH . GA 7 HOH A 115 715 725 HOH HOH . GA 7 HOH A 116 716 625 HOH HOH . GA 7 HOH A 117 717 743 HOH HOH . GA 7 HOH A 118 718 919 HOH HOH . GA 7 HOH A 119 719 818 HOH HOH . GA 7 HOH A 120 720 759 HOH HOH . GA 7 HOH A 121 721 761 HOH HOH . GA 7 HOH A 122 722 813 HOH HOH . GA 7 HOH A 123 723 600 HOH HOH . GA 7 HOH A 124 724 800 HOH HOH . GA 7 HOH A 125 725 797 HOH HOH . GA 7 HOH A 126 726 613 HOH HOH . GA 7 HOH A 127 727 626 HOH HOH . GA 7 HOH A 128 728 791 HOH HOH . GA 7 HOH A 129 729 787 HOH HOH . GA 7 HOH A 130 730 674 HOH HOH . GA 7 HOH A 131 731 911 HOH HOH . GA 7 HOH A 132 732 694 HOH HOH . GA 7 HOH A 133 733 742 HOH HOH . GA 7 HOH A 134 734 676 HOH HOH . GA 7 HOH A 135 735 860 HOH HOH . GA 7 HOH A 136 736 799 HOH HOH . GA 7 HOH A 137 737 734 HOH HOH . GA 7 HOH A 138 738 660 HOH HOH . GA 7 HOH A 139 739 762 HOH HOH . GA 7 HOH A 140 740 688 HOH HOH . GA 7 HOH A 141 741 769 HOH HOH . GA 7 HOH A 142 742 826 HOH HOH . GA 7 HOH A 143 743 639 HOH HOH . GA 7 HOH A 144 744 610 HOH HOH . GA 7 HOH A 145 745 695 HOH HOH . GA 7 HOH A 146 746 710 HOH HOH . GA 7 HOH A 147 747 853 HOH HOH . GA 7 HOH A 148 748 711 HOH HOH . GA 7 HOH A 149 749 835 HOH HOH . GA 7 HOH A 150 750 833 HOH HOH . GA 7 HOH A 151 751 713 HOH HOH . GA 7 HOH A 152 752 631 HOH HOH . GA 7 HOH A 153 753 664 HOH HOH . GA 7 HOH A 154 754 918 HOH HOH . GA 7 HOH A 155 755 786 HOH HOH . GA 7 HOH A 156 756 900 HOH HOH . GA 7 HOH A 157 757 718 HOH HOH . GA 7 HOH A 158 758 601 HOH HOH . GA 7 HOH A 159 759 656 HOH HOH . GA 7 HOH A 160 760 717 HOH HOH . GA 7 HOH A 161 761 861 HOH HOH . GA 7 HOH A 162 762 668 HOH HOH . GA 7 HOH A 163 763 849 HOH HOH . GA 7 HOH A 164 764 683 HOH HOH . GA 7 HOH A 165 765 714 HOH HOH . GA 7 HOH A 166 766 655 HOH HOH . GA 7 HOH A 167 767 882 HOH HOH . GA 7 HOH A 168 768 704 HOH HOH . GA 7 HOH A 169 769 647 HOH HOH . GA 7 HOH A 170 770 665 HOH HOH . GA 7 HOH A 171 771 873 HOH HOH . GA 7 HOH A 172 772 638 HOH HOH . GA 7 HOH A 173 773 680 HOH HOH . GA 7 HOH A 174 774 872 HOH HOH . GA 7 HOH A 175 775 894 HOH HOH . GA 7 HOH A 176 776 832 HOH HOH . GA 7 HOH A 177 777 629 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . EA 5 -4.146 21.355 -0.92 1 27.16 ? C1 NAG 530 A 1 HETATM 2 C C2 NAG . . . EA 5 -5.227 22.108 -1.709 1 44.61 ? C2 NAG 530 A 1 HETATM 3 C C3 NAG . . . EA 5 -6.615 21.854 -1.114 1 48.97 ? C3 NAG 530 A 1 HETATM 4 C C4 NAG . . . EA 5 -6.873 20.365 -0.931 1 46.44 ? C4 NAG 530 A 1 HETATM 5 C C5 NAG . . . EA 5 -5.749 19.751 -0.11 1 41.44 ? C5 NAG 530 A 1 HETATM 6 C C6 NAG . . . EA 5 -5.892 18.258 0.079 1 46.24 ? C6 NAG 530 A 1 HETATM 7 C C7 NAG . . . EA 5 -4.636 24.217 -2.83 1 60.2 ? C7 NAG 530 A 1 HETATM 8 C C8 NAG . . . EA 5 -4.375 25.682 -2.645 1 61.96 ? C8 NAG 530 A 1 HETATM 9 N N2 NAG . . . EA 5 -4.941 23.534 -1.722 1 49.11 ? N2 NAG 530 A 1 HETATM 10 O O3 NAG . . . EA 5 -7.597 22.399 -1.986 1 56.04 ? O3 NAG 530 A 1 HETATM 11 O O4 NAG . . . EA 5 -8.113 20.164 -0.264 1 45.46 ? O4 NAG 530 A 1 HETATM 12 O O5 NAG . . . EA 5 -4.509 19.969 -0.794 1 31.51 ? O5 NAG 530 A 1 HETATM 13 O O6 NAG . . . EA 5 -6.021 17.585 -1.166 1 47.17 ? O6 NAG 530 A 1 HETATM 14 O O7 NAG . . . EA 5 -4.576 23.678 -3.932 1 64.34 ? O7 NAG 530 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 377 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 14 #