data_6TV4 # _model_server_result.job_id SMg9Qy_cT007Eva-3V9aIg _model_server_result.datetime_utc '2024-11-13 04:13:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tv4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":605}' # _entry.id 6TV4 # _exptl.entry_id 6TV4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TV4 _cell.length_a 59.987 _cell.length_b 71.574 _cell.length_c 78.313 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TV4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? disulf ? disulf4 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? disulf ? disulf5 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf6 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 F C1 NAG . A NAG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 284 n n C1 O1 NAG sing 285 n n C1 O5 NAG sing 286 n n C1 H1 NAG sing 287 n n C2 C3 NAG sing 288 n n C2 N2 NAG sing 289 n n C2 H2 NAG sing 290 n n C3 C4 NAG sing 291 n n C3 O3 NAG sing 292 n n C3 H3 NAG sing 293 n n C4 C5 NAG sing 294 n n C4 O4 NAG sing 295 n n C4 H4 NAG sing 296 n n C5 C6 NAG sing 297 n n C5 O5 NAG sing 298 n n C5 H5 NAG sing 299 n n C6 O6 NAG sing 300 n n C6 H61 NAG sing 301 n n C6 H62 NAG sing 302 n n C7 C8 NAG sing 303 n n C7 N2 NAG sing 304 n n C7 O7 NAG doub 305 n n C8 H81 NAG sing 306 n n C8 H82 NAG sing 307 n n C8 H83 NAG sing 308 n n N2 HN2 NAG sing 309 n n O1 HO1 NAG sing 310 n n O3 HO3 NAG sing 311 n n O4 HO4 NAG sing 312 n n O6 HO6 NAG sing 313 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6TV4 _atom_sites.fract_transf_matrix[1][1] 0.01667 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013972 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012769 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 601 601 SO4 SO4 . C 2 SO4 A 1 602 602 SO4 SO4 . D 2 SO4 A 1 603 603 SO4 SO4 . E 2 SO4 A 1 604 604 SO4 SO4 . F 3 NAG A 1 605 1452 NAG NAG . G 4 DMS A 1 606 1501 DMS DMS . H 4 DMS A 1 607 1601 DMS DMS . I 2 SO4 A 1 608 1 SO4 SO4 . J 2 SO4 A 1 609 2 SO4 SO4 . K 2 SO4 A 1 610 3 SO4 SO4 . L 2 SO4 A 1 611 4 SO4 SO4 . M 2 SO4 A 1 612 5 SO4 SO4 . N 2 SO4 A 1 613 7 SO4 SO4 . O 2 SO4 A 1 614 8 SO4 SO4 . P 2 SO4 A 1 615 9 SO4 SO4 . Q 5 CFF A 1 616 1 CFF CFF . R 6 GOL A 1 617 2 GOL GOL . S 6 GOL A 1 618 3 GOL GOL . T 6 GOL A 1 619 5 GOL GOL . U 6 GOL A 1 620 6 GOL GOL . V 6 GOL A 1 621 7 GOL GOL . W 7 HOH A 1 701 1027 HOH HOH . W 7 HOH A 2 702 1050 HOH HOH . W 7 HOH A 3 703 1068 HOH HOH . W 7 HOH A 4 704 9 HOH HOH . W 7 HOH A 5 705 1046 HOH HOH . W 7 HOH A 6 706 1033 HOH HOH . W 7 HOH A 7 707 1058 HOH HOH . W 7 HOH A 8 708 1001 HOH HOH . W 7 HOH A 9 709 19 HOH HOH . W 7 HOH A 10 710 1 HOH HOH . W 7 HOH A 11 711 1036 HOH HOH . W 7 HOH A 12 712 1047 HOH HOH . W 7 HOH A 13 713 1169 HOH HOH . W 7 HOH A 14 714 1031 HOH HOH . W 7 HOH A 15 715 1082 HOH HOH . W 7 HOH A 16 716 1197 HOH HOH . W 7 HOH A 17 717 1091 HOH HOH . W 7 HOH A 18 718 1066 HOH HOH . W 7 HOH A 19 719 8 HOH HOH . W 7 HOH A 20 720 1123 HOH HOH . W 7 HOH A 21 721 1118 HOH HOH . W 7 HOH A 22 722 1067 HOH HOH . W 7 HOH A 23 723 1004 HOH HOH . W 7 HOH A 24 724 1043 HOH HOH . W 7 HOH A 25 725 1196 HOH HOH . W 7 HOH A 26 726 1059 HOH HOH . W 7 HOH A 27 727 1045 HOH HOH . W 7 HOH A 28 728 1029 HOH HOH . W 7 HOH A 29 729 1190 HOH HOH . W 7 HOH A 30 730 1055 HOH HOH . W 7 HOH A 31 731 1062 HOH HOH . W 7 HOH A 32 732 1145 HOH HOH . W 7 HOH A 33 733 1048 HOH HOH . W 7 HOH A 34 734 6 HOH HOH . W 7 HOH A 35 735 1007 HOH HOH . W 7 HOH A 36 736 1008 HOH HOH . W 7 HOH A 37 737 1003 HOH HOH . W 7 HOH A 38 738 1075 HOH HOH . W 7 HOH A 39 739 1040 HOH HOH . W 7 HOH A 40 740 12 HOH HOH . W 7 HOH A 41 741 1018 HOH HOH . W 7 HOH A 42 742 1070 HOH HOH . W 7 HOH A 43 743 1052 HOH HOH . W 7 HOH A 44 744 1051 HOH HOH . W 7 HOH A 45 745 1081 HOH HOH . W 7 HOH A 46 746 1019 HOH HOH . W 7 HOH A 47 747 1010 HOH HOH . W 7 HOH A 48 748 1011 HOH HOH . W 7 HOH A 49 749 4 HOH HOH . W 7 HOH A 50 750 17 HOH HOH . W 7 HOH A 51 751 1038 HOH HOH . W 7 HOH A 52 752 1015 HOH HOH . W 7 HOH A 53 753 1013 HOH HOH . W 7 HOH A 54 754 1012 HOH HOH . W 7 HOH A 55 755 1073 HOH HOH . W 7 HOH A 56 756 1016 HOH HOH . W 7 HOH A 57 757 1159 HOH HOH . W 7 HOH A 58 758 1065 HOH HOH . W 7 HOH A 59 759 16 HOH HOH . W 7 HOH A 60 760 1017 HOH HOH . W 7 HOH A 61 761 1054 HOH HOH . W 7 HOH A 62 762 1064 HOH HOH . W 7 HOH A 63 763 1085 HOH HOH . W 7 HOH A 64 764 1114 HOH HOH . W 7 HOH A 65 765 1002 HOH HOH . W 7 HOH A 66 766 1056 HOH HOH . W 7 HOH A 67 767 1150 HOH HOH . W 7 HOH A 68 768 1072 HOH HOH . W 7 HOH A 69 769 1020 HOH HOH . W 7 HOH A 70 770 1125 HOH HOH . W 7 HOH A 71 771 1023 HOH HOH . W 7 HOH A 72 772 1098 HOH HOH . W 7 HOH A 73 773 1122 HOH HOH . W 7 HOH A 74 774 1057 HOH HOH . W 7 HOH A 75 775 1030 HOH HOH . W 7 HOH A 76 776 1133 HOH HOH . W 7 HOH A 77 777 1005 HOH HOH . W 7 HOH A 78 778 1063 HOH HOH . W 7 HOH A 79 779 1035 HOH HOH . W 7 HOH A 80 780 1071 HOH HOH . W 7 HOH A 81 781 1078 HOH HOH . W 7 HOH A 82 782 1014 HOH HOH . W 7 HOH A 83 783 1074 HOH HOH . W 7 HOH A 84 784 1026 HOH HOH . W 7 HOH A 85 785 1120 HOH HOH . W 7 HOH A 86 786 1006 HOH HOH . W 7 HOH A 87 787 1096 HOH HOH . W 7 HOH A 88 788 1042 HOH HOH . W 7 HOH A 89 789 1041 HOH HOH . W 7 HOH A 90 790 1039 HOH HOH . W 7 HOH A 91 791 10 HOH HOH . W 7 HOH A 92 792 1106 HOH HOH . W 7 HOH A 93 793 1109 HOH HOH . W 7 HOH A 94 794 1077 HOH HOH . W 7 HOH A 95 795 13 HOH HOH . W 7 HOH A 96 796 1037 HOH HOH . W 7 HOH A 97 797 2 HOH HOH . W 7 HOH A 98 798 1140 HOH HOH . W 7 HOH A 99 799 1049 HOH HOH . W 7 HOH A 100 800 1080 HOH HOH . W 7 HOH A 101 801 1115 HOH HOH . W 7 HOH A 102 802 1079 HOH HOH . W 7 HOH A 103 803 1142 HOH HOH . W 7 HOH A 104 804 1198 HOH HOH . W 7 HOH A 105 805 18 HOH HOH . W 7 HOH A 106 806 1113 HOH HOH . W 7 HOH A 107 807 15 HOH HOH . W 7 HOH A 108 808 1129 HOH HOH . W 7 HOH A 109 809 1155 HOH HOH . W 7 HOH A 110 810 1152 HOH HOH . W 7 HOH A 111 811 1136 HOH HOH . W 7 HOH A 112 812 1162 HOH HOH . W 7 HOH A 113 813 1112 HOH HOH . W 7 HOH A 114 814 1153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 3 -4.218 20.918 -0.83 1 32.95 ? C1 NAG 605 A 1 HETATM 2 C C2 NAG . . . F 3 -5.229 21.199 -1.932 1 36.76 ? C2 NAG 605 A 1 HETATM 3 C C3 NAG . . . F 3 -6.654 20.929 -1.472 1 39.46 ? C3 NAG 605 A 1 HETATM 4 C C4 NAG . . . F 3 -6.754 19.56 -0.812 1 38.51 ? C4 NAG 605 A 1 HETATM 5 C C5 NAG . . . F 3 -5.686 19.395 0.265 1 36.98 ? C5 NAG 605 A 1 HETATM 6 C C6 NAG . . . F 3 -5.724 18.02 0.926 1 38.36 ? C6 NAG 605 A 1 HETATM 7 C C7 NAG . . . F 3 -4.334 22.913 -3.424 1 44.12 ? C7 NAG 605 A 1 HETATM 8 C C8 NAG . . . F 3 -4.253 24.377 -3.728 1 46.62 ? C8 NAG 605 A 1 HETATM 9 N N2 NAG . . . F 3 -5.079 22.579 -2.368 1 39.8 ? N2 NAG 605 A 1 HETATM 10 O O3 NAG . . . F 3 -7.527 20.975 -2.603 1 46.49 ? O3 NAG 605 A 1 HETATM 11 O O4 NAG . . . F 3 -8.063 19.427 -0.254 1 40.65 ? O4 NAG 605 A 1 HETATM 12 O O5 NAG . . . F 3 -4.402 19.597 -0.323 1 33.06 ? O5 NAG 605 A 1 HETATM 13 O O6 NAG . . . F 3 -5.392 16.972 0.006 1 40.26 ? O6 NAG 605 A 1 HETATM 14 O O7 NAG . . . F 3 -3.747 22.089 -4.106 1 49.01 ? O7 NAG 605 A 1 HETATM 15 H H1 NAG . . . F 3 -4.401 21.641 -0.024 1 33.4 ? H1 NAG 605 A 1 HETATM 16 H H2 NAG . . . F 3 -5.017 20.522 -2.772 1 37.2 ? H2 NAG 605 A 1 HETATM 17 H H3 NAG . . . F 3 -6.943 21.697 -0.742 1 40.06 ? H3 NAG 605 A 1 HETATM 18 H H4 NAG . . . F 3 -6.6 18.79 -1.58 1 38.61 ? H4 NAG 605 A 1 HETATM 19 H H5 NAG . . . F 3 -5.858 20.153 1.042 1 36.35 ? H5 NAG 605 A 1 HETATM 20 H H61 NAG . . . F 3 -6.728 17.853 1.305 1 38.66 ? H61 NAG 605 A 1 HETATM 21 H H62 NAG . . . F 3 -5.032 17.999 1.771 1 38.26 ? H62 NAG 605 A 1 HETATM 22 H H81 NAG . . . F 3 -3.783 24.88 -2.924 1 46.36 ? H81 NAG 605 A 1 HETATM 23 H H82 NAG . . . F 3 -3.69 24.522 -4.613 1 46.29 ? H82 NAG 605 A 1 HETATM 24 H H83 NAG . . . F 3 -5.23 24.764 -3.864 1 46.13 ? H83 NAG 605 A 1 HETATM 25 H HN2 NAG . . . F 3 -5.548 23.299 -1.838 1 40.26 ? HN2 NAG 605 A 1 HETATM 26 H HO3 NAG . . . F 3 -8.434 20.859 -2.286 0 47.94 ? HO3 NAG 605 A 1 HETATM 27 H HO4 NAG . . . F 3 -8.148 18.533 0.111 0 41.37 ? HO4 NAG 605 A 1 HETATM 28 H HO6 NAG . . . F 3 -5.435 16.075 0.318 0 43.96 ? HO6 NAG 605 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #