data_6TV4 # _model_server_result.job_id H63s3ak2pD2rLkGeVD05SQ _model_server_result.datetime_utc '2024-11-22 23:37:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tv4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":616}' # _entry.id 6TV4 # _exptl.entry_id 6TV4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.191 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CAFFEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TV4 _cell.length_a 59.987 _cell.length_b 71.574 _cell.length_c 78.313 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TV4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id Q _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? disulf ? disulf4 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? disulf ? disulf5 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf6 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 F C1 NAG . A NAG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? # _chem_comp.formula 'C8 H10 N4 O2' _chem_comp.formula_weight 194.191 _chem_comp.id CFF _chem_comp.mon_nstd_flag . _chem_comp.name CAFFEINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3,7-DIHYDRO-1,3,7-TRIMETHYL-1H-PURINE-2,6-DIONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 CFF sing 70 n y N1 C10 CFF sing 71 n n N1 C6 CFF sing 72 n y C2 N3 CFF sing 73 n y C2 O11 CFF doub 74 n n C10 H101 CFF sing 75 n n C10 H102 CFF sing 76 n n C10 H103 CFF sing 77 n n C6 C5 CFF sing 78 n y C6 O13 CFF doub 79 n n N3 C12 CFF sing 80 n n N3 C4 CFF sing 81 n y C12 H121 CFF sing 82 n n C12 H122 CFF sing 83 n n C12 H123 CFF sing 84 n n C4 C5 CFF doub 85 n y C4 N9 CFF sing 86 n y C5 N7 CFF sing 87 n y N9 C8 CFF doub 88 n y N7 C8 CFF sing 89 n y N7 C14 CFF sing 90 n n C8 H81 CFF sing 91 n n C14 H141 CFF sing 92 n n C14 H142 CFF sing 93 n n C14 H143 CFF sing 94 n n # _atom_sites.entry_id 6TV4 _atom_sites.fract_transf_matrix[1][1] 0.01667 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013972 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012769 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 601 601 SO4 SO4 . C 2 SO4 A 1 602 602 SO4 SO4 . D 2 SO4 A 1 603 603 SO4 SO4 . E 2 SO4 A 1 604 604 SO4 SO4 . F 3 NAG A 1 605 1452 NAG NAG . G 4 DMS A 1 606 1501 DMS DMS . H 4 DMS A 1 607 1601 DMS DMS . I 2 SO4 A 1 608 1 SO4 SO4 . J 2 SO4 A 1 609 2 SO4 SO4 . K 2 SO4 A 1 610 3 SO4 SO4 . L 2 SO4 A 1 611 4 SO4 SO4 . M 2 SO4 A 1 612 5 SO4 SO4 . N 2 SO4 A 1 613 7 SO4 SO4 . O 2 SO4 A 1 614 8 SO4 SO4 . P 2 SO4 A 1 615 9 SO4 SO4 . Q 5 CFF A 1 616 1 CFF CFF . R 6 GOL A 1 617 2 GOL GOL . S 6 GOL A 1 618 3 GOL GOL . T 6 GOL A 1 619 5 GOL GOL . U 6 GOL A 1 620 6 GOL GOL . V 6 GOL A 1 621 7 GOL GOL . W 7 HOH A 1 701 1027 HOH HOH . W 7 HOH A 2 702 1050 HOH HOH . W 7 HOH A 3 703 1068 HOH HOH . W 7 HOH A 4 704 9 HOH HOH . W 7 HOH A 5 705 1046 HOH HOH . W 7 HOH A 6 706 1033 HOH HOH . W 7 HOH A 7 707 1058 HOH HOH . W 7 HOH A 8 708 1001 HOH HOH . W 7 HOH A 9 709 19 HOH HOH . W 7 HOH A 10 710 1 HOH HOH . W 7 HOH A 11 711 1036 HOH HOH . W 7 HOH A 12 712 1047 HOH HOH . W 7 HOH A 13 713 1169 HOH HOH . W 7 HOH A 14 714 1031 HOH HOH . W 7 HOH A 15 715 1082 HOH HOH . W 7 HOH A 16 716 1197 HOH HOH . W 7 HOH A 17 717 1091 HOH HOH . W 7 HOH A 18 718 1066 HOH HOH . W 7 HOH A 19 719 8 HOH HOH . W 7 HOH A 20 720 1123 HOH HOH . W 7 HOH A 21 721 1118 HOH HOH . W 7 HOH A 22 722 1067 HOH HOH . W 7 HOH A 23 723 1004 HOH HOH . W 7 HOH A 24 724 1043 HOH HOH . W 7 HOH A 25 725 1196 HOH HOH . W 7 HOH A 26 726 1059 HOH HOH . W 7 HOH A 27 727 1045 HOH HOH . W 7 HOH A 28 728 1029 HOH HOH . W 7 HOH A 29 729 1190 HOH HOH . W 7 HOH A 30 730 1055 HOH HOH . W 7 HOH A 31 731 1062 HOH HOH . W 7 HOH A 32 732 1145 HOH HOH . W 7 HOH A 33 733 1048 HOH HOH . W 7 HOH A 34 734 6 HOH HOH . W 7 HOH A 35 735 1007 HOH HOH . W 7 HOH A 36 736 1008 HOH HOH . W 7 HOH A 37 737 1003 HOH HOH . W 7 HOH A 38 738 1075 HOH HOH . W 7 HOH A 39 739 1040 HOH HOH . W 7 HOH A 40 740 12 HOH HOH . W 7 HOH A 41 741 1018 HOH HOH . W 7 HOH A 42 742 1070 HOH HOH . W 7 HOH A 43 743 1052 HOH HOH . W 7 HOH A 44 744 1051 HOH HOH . W 7 HOH A 45 745 1081 HOH HOH . W 7 HOH A 46 746 1019 HOH HOH . W 7 HOH A 47 747 1010 HOH HOH . W 7 HOH A 48 748 1011 HOH HOH . W 7 HOH A 49 749 4 HOH HOH . W 7 HOH A 50 750 17 HOH HOH . W 7 HOH A 51 751 1038 HOH HOH . W 7 HOH A 52 752 1015 HOH HOH . W 7 HOH A 53 753 1013 HOH HOH . W 7 HOH A 54 754 1012 HOH HOH . W 7 HOH A 55 755 1073 HOH HOH . W 7 HOH A 56 756 1016 HOH HOH . W 7 HOH A 57 757 1159 HOH HOH . W 7 HOH A 58 758 1065 HOH HOH . W 7 HOH A 59 759 16 HOH HOH . W 7 HOH A 60 760 1017 HOH HOH . W 7 HOH A 61 761 1054 HOH HOH . W 7 HOH A 62 762 1064 HOH HOH . W 7 HOH A 63 763 1085 HOH HOH . W 7 HOH A 64 764 1114 HOH HOH . W 7 HOH A 65 765 1002 HOH HOH . W 7 HOH A 66 766 1056 HOH HOH . W 7 HOH A 67 767 1150 HOH HOH . W 7 HOH A 68 768 1072 HOH HOH . W 7 HOH A 69 769 1020 HOH HOH . W 7 HOH A 70 770 1125 HOH HOH . W 7 HOH A 71 771 1023 HOH HOH . W 7 HOH A 72 772 1098 HOH HOH . W 7 HOH A 73 773 1122 HOH HOH . W 7 HOH A 74 774 1057 HOH HOH . W 7 HOH A 75 775 1030 HOH HOH . W 7 HOH A 76 776 1133 HOH HOH . W 7 HOH A 77 777 1005 HOH HOH . W 7 HOH A 78 778 1063 HOH HOH . W 7 HOH A 79 779 1035 HOH HOH . W 7 HOH A 80 780 1071 HOH HOH . W 7 HOH A 81 781 1078 HOH HOH . W 7 HOH A 82 782 1014 HOH HOH . W 7 HOH A 83 783 1074 HOH HOH . W 7 HOH A 84 784 1026 HOH HOH . W 7 HOH A 85 785 1120 HOH HOH . W 7 HOH A 86 786 1006 HOH HOH . W 7 HOH A 87 787 1096 HOH HOH . W 7 HOH A 88 788 1042 HOH HOH . W 7 HOH A 89 789 1041 HOH HOH . W 7 HOH A 90 790 1039 HOH HOH . W 7 HOH A 91 791 10 HOH HOH . W 7 HOH A 92 792 1106 HOH HOH . W 7 HOH A 93 793 1109 HOH HOH . W 7 HOH A 94 794 1077 HOH HOH . W 7 HOH A 95 795 13 HOH HOH . W 7 HOH A 96 796 1037 HOH HOH . W 7 HOH A 97 797 2 HOH HOH . W 7 HOH A 98 798 1140 HOH HOH . W 7 HOH A 99 799 1049 HOH HOH . W 7 HOH A 100 800 1080 HOH HOH . W 7 HOH A 101 801 1115 HOH HOH . W 7 HOH A 102 802 1079 HOH HOH . W 7 HOH A 103 803 1142 HOH HOH . W 7 HOH A 104 804 1198 HOH HOH . W 7 HOH A 105 805 18 HOH HOH . W 7 HOH A 106 806 1113 HOH HOH . W 7 HOH A 107 807 15 HOH HOH . W 7 HOH A 108 808 1129 HOH HOH . W 7 HOH A 109 809 1155 HOH HOH . W 7 HOH A 110 810 1152 HOH HOH . W 7 HOH A 111 811 1136 HOH HOH . W 7 HOH A 112 812 1162 HOH HOH . W 7 HOH A 113 813 1112 HOH HOH . W 7 HOH A 114 814 1153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CFF . . . Q 5 -0.012 -6.219 5.26 1 27.01 ? N1 CFF 616 A 1 HETATM 2 C C2 CFF . . . Q 5 0.33 -4.95 4.905 1 31.89 ? C2 CFF 616 A 1 HETATM 3 C C10 CFF . . . Q 5 -1.357 -6.686 4.974 1 28.71 ? C10 CFF 616 A 1 HETATM 4 C C6 CFF . . . Q 5 0.886 -7 5.859 1 29.23 ? C6 CFF 616 A 1 HETATM 5 N N3 CFF . . . Q 5 1.58 -4.473 5.147 1 30.36 ? N3 CFF 616 A 1 HETATM 6 O O11 CFF . . . Q 5 -0.475 -4.251 4.381 1 33.53 ? O11 CFF 616 A 1 HETATM 7 C C12 CFF . . . Q 5 1.944 -3.113 4.765 1 31.69 ? C12 CFF 616 A 1 HETATM 8 C C4 CFF . . . Q 5 2.486 -5.259 5.749 1 30.32 ? C4 CFF 616 A 1 HETATM 9 C C5 CFF . . . Q 5 2.153 -6.506 6.104 1 30.53 ? C5 CFF 616 A 1 HETATM 10 N N9 CFF . . . Q 5 3.761 -5.045 6.1 1 30.72 ? N9 CFF 616 A 1 HETATM 11 O O13 CFF . . . Q 5 0.629 -8.112 6.189 1 29.33 ? O13 CFF 616 A 1 HETATM 12 N N7 CFF . . . Q 5 3.22 -7.064 6.667 1 31.7 ? N7 CFF 616 A 1 HETATM 13 C C8 CFF . . . Q 5 4.215 -6.164 6.663 1 33.16 ? C8 CFF 616 A 1 HETATM 14 C C14 CFF . . . Q 5 3.643 -8.31 7.267 1 32.23 ? C14 CFF 616 A 1 HETATM 15 H H101 CFF . . . Q 5 -1.487 -7.707 5.325 1 27.94 ? H101 CFF 616 A 1 HETATM 16 H H102 CFF . . . Q 5 -1.529 -6.654 3.898 1 28 ? H102 CFF 616 A 1 HETATM 17 H H103 CFF . . . Q 5 -2.08 -6.042 5.475 1 28.33 ? H103 CFF 616 A 1 HETATM 18 H H121 CFF . . . Q 5 2.989 -2.911 4.997 1 31.24 ? H121 CFF 616 A 1 HETATM 19 H H122 CFF . . . Q 5 1.314 -2.413 5.31 1 29.69 ? H122 CFF 616 A 1 HETATM 20 H H123 CFF . . . Q 5 1.784 -2.983 3.694 1 31.14 ? H123 CFF 616 A 1 HETATM 21 H H81 CFF . . . Q 5 5.21 -6.313 7.057 1 32.09 ? H81 CFF 616 A 1 HETATM 22 H H141 CFF . . . Q 5 2.777 -8.946 7.45 1 31.62 ? H141 CFF 616 A 1 HETATM 23 H H142 CFF . . . Q 5 4.148 -8.096 8.206 1 31.92 ? H142 CFF 616 A 1 HETATM 24 H H143 CFF . . . Q 5 4.335 -8.819 6.595 1 32.03 ? H143 CFF 616 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 24 #