data_6TV7 # _model_server_result.job_id iV38MZJZYRU1L6EtrRmdLg _model_server_result.datetime_utc '2024-11-22 20:28:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tv7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":506}' # _entry.id 6TV7 # _exptl.entry_id 6TV7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TV7 _cell.length_a 120.67 _cell.length_b 120.67 _cell.length_c 96.02 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TV7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 187 A LEU 222 1_555 A N1 PIA 188 A PIA 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.397 ? covale ? covale2 A C3 PIA 188 A PIA 224 1_555 A N VAL 189 A VAL 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? metalc ? metalc1 A O ALA 208 A ALA 245 1_555 H NA NA . A NA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.07 ? metalc ? metalc2 A OD1 ASP 286 A ASP 323 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? metalc ? metalc3 A OD1 ASP 288 A ASP 325 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc4 A OD1 ASP 290 A ASP 327 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc5 A O THR 292 A THR 329 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc6 A OE1 GLU 297 A GLU 334 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc7 A OE2 GLU 297 A GLU 334 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc8 A OD1 ASP 322 A ASP 359 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc9 A OD1 ASP 324 A ASP 361 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc10 A OD1 ASP 326 A ASP 363 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc11 A O THR 328 A THR 365 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc12 A OD1 ASP 330 A ASP 367 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc13 A OE1 GLU 333 A GLU 370 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc14 A OE2 GLU 333 A GLU 370 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc15 A OD1 ASP 359 A ASP 396 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? metalc ? metalc16 A OD1 ASP 361 A ASP 398 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.096 ? metalc ? metalc17 A OD2 ASP 361 A ASP 398 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc18 A OD1 ASN 363 A ASN 400 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc19 A O TYR 365 A TYR 402 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc20 A OE1 GLU 370 A GLU 407 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc21 A OE2 GLU 370 A GLU 407 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc22 A OD1 ASP 395 A ASP 432 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc23 A OD1 ASP 397 A ASP 434 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc24 A OD1 ASP 399 A ASP 436 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc25 A O GLN 401 A GLN 438 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc26 A OE1 GLU 406 A GLU 443 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc27 A OE2 GLU 406 A GLU 443 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc28 H NA NA . A NA 507 1_555 K O HOH . A HOH 639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.026 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6TV7 _atom_sites.fract_transf_matrix[1][1] 0.008287 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008287 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010414 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 501 1 CA CA . C 2 CA A 1 502 2 CA CA . D 2 CA A 1 503 3 CA CA . E 2 CA A 1 504 4 CA CA . F 3 NA A 1 505 1 NA NA . G 3 NA A 1 506 2 NA NA . H 3 NA A 1 507 3 NA NA . I 3 NA A 1 508 4 NA NA . J 3 NA A 1 509 5 NA NA . K 4 HOH A 1 601 42 HOH HOH . K 4 HOH A 2 602 20 HOH HOH . K 4 HOH A 3 603 76 HOH HOH . K 4 HOH A 4 604 96 HOH HOH . K 4 HOH A 5 605 80 HOH HOH . K 4 HOH A 6 606 83 HOH HOH . K 4 HOH A 7 607 78 HOH HOH . K 4 HOH A 8 608 77 HOH HOH . K 4 HOH A 9 609 37 HOH HOH . K 4 HOH A 10 610 73 HOH HOH . K 4 HOH A 11 611 102 HOH HOH . K 4 HOH A 12 612 5 HOH HOH . K 4 HOH A 13 613 53 HOH HOH . K 4 HOH A 14 614 66 HOH HOH . K 4 HOH A 15 615 111 HOH HOH . K 4 HOH A 16 616 58 HOH HOH . K 4 HOH A 17 617 56 HOH HOH . K 4 HOH A 18 618 81 HOH HOH . K 4 HOH A 19 619 13 HOH HOH . K 4 HOH A 20 620 74 HOH HOH . K 4 HOH A 21 621 26 HOH HOH . K 4 HOH A 22 622 103 HOH HOH . K 4 HOH A 23 623 65 HOH HOH . K 4 HOH A 24 624 57 HOH HOH . K 4 HOH A 25 625 24 HOH HOH . K 4 HOH A 26 626 90 HOH HOH . K 4 HOH A 27 627 15 HOH HOH . K 4 HOH A 28 628 89 HOH HOH . K 4 HOH A 29 629 94 HOH HOH . K 4 HOH A 30 630 17 HOH HOH . K 4 HOH A 31 631 63 HOH HOH . K 4 HOH A 32 632 52 HOH HOH . K 4 HOH A 33 633 22 HOH HOH . K 4 HOH A 34 634 9 HOH HOH . K 4 HOH A 35 635 41 HOH HOH . K 4 HOH A 36 636 112 HOH HOH . K 4 HOH A 37 637 47 HOH HOH . K 4 HOH A 38 638 32 HOH HOH . K 4 HOH A 39 639 46 HOH HOH . K 4 HOH A 40 640 55 HOH HOH . K 4 HOH A 41 641 4 HOH HOH . K 4 HOH A 42 642 45 HOH HOH . K 4 HOH A 43 643 110 HOH HOH . K 4 HOH A 44 644 108 HOH HOH . K 4 HOH A 45 645 35 HOH HOH . K 4 HOH A 46 646 84 HOH HOH . K 4 HOH A 47 647 106 HOH HOH . K 4 HOH A 48 648 23 HOH HOH . K 4 HOH A 49 649 70 HOH HOH . K 4 HOH A 50 650 48 HOH HOH . K 4 HOH A 51 651 7 HOH HOH . K 4 HOH A 52 652 69 HOH HOH . K 4 HOH A 53 653 88 HOH HOH . K 4 HOH A 54 654 113 HOH HOH . K 4 HOH A 55 655 50 HOH HOH . K 4 HOH A 56 656 2 HOH HOH . K 4 HOH A 57 657 62 HOH HOH . K 4 HOH A 58 658 30 HOH HOH . K 4 HOH A 59 659 101 HOH HOH . K 4 HOH A 60 660 72 HOH HOH . K 4 HOH A 61 661 79 HOH HOH . K 4 HOH A 62 662 64 HOH HOH . K 4 HOH A 63 663 34 HOH HOH . K 4 HOH A 64 664 71 HOH HOH . K 4 HOH A 65 665 27 HOH HOH . K 4 HOH A 66 666 39 HOH HOH . K 4 HOH A 67 667 99 HOH HOH . K 4 HOH A 68 668 87 HOH HOH . K 4 HOH A 69 669 25 HOH HOH . K 4 HOH A 70 670 54 HOH HOH . K 4 HOH A 71 671 97 HOH HOH . K 4 HOH A 72 672 61 HOH HOH . K 4 HOH A 73 673 11 HOH HOH . K 4 HOH A 74 674 82 HOH HOH . K 4 HOH A 75 675 92 HOH HOH . K 4 HOH A 76 676 93 HOH HOH . K 4 HOH A 77 677 28 HOH HOH . K 4 HOH A 78 678 75 HOH HOH . K 4 HOH A 79 679 1 HOH HOH . K 4 HOH A 80 680 107 HOH HOH . K 4 HOH A 81 681 98 HOH HOH . K 4 HOH A 82 682 95 HOH HOH . K 4 HOH A 83 683 100 HOH HOH . K 4 HOH A 84 684 49 HOH HOH . K 4 HOH A 85 685 67 HOH HOH . K 4 HOH A 86 686 51 HOH HOH . K 4 HOH A 87 687 109 HOH HOH . K 4 HOH A 88 688 85 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x 28.572 _atom_site.Cartn_y 21.727 _atom_site.Cartn_z -5.657 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.17 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 506 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #