data_6TVO # _model_server_result.job_id Cc_Fh1LZFqFSiFPQsu3sFQ _model_server_result.datetime_utc '2024-11-23 03:22:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tvo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1101}' # _entry.id 6TVO # _exptl.entry_id 6TVO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 560.762 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Leptomycin B,bound form' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TVO _cell.length_a 122.29 _cell.length_b 151.33 _cell.length_c 234.843 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TVO _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B SG CYS 542 A CYS 528 1_555 E C3 LMB . A LMB 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? metalc ? metalc1 A OG1 THR 26 B THR 24 1_555 D MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc2 A OG1 THR 44 B THR 42 1_555 D MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc3 C O3G GTP . B GTP 201 1_555 D MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc4 C O1B GTP . B GTP 201 1_555 D MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? # _chem_comp.formula 'C33 H52 O7' _chem_comp.formula_weight 560.762 _chem_comp.id LMB _chem_comp.mon_nstd_flag . _chem_comp.name 'Leptomycin B, bound form' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C30 C16 LMB sing 242 n n C27 C26 LMB sing 243 n n C26 C8 LMB sing 244 n n C11 C12 LMB sing 245 n n C11 C10 LMB sing 246 n n C13 C12 LMB doub 247 e n C13 C14 LMB sing 248 n n C15 C16 LMB sing 249 n n C15 C14 LMB doub 250 e n O2 C5 LMB sing 251 n n C8 C9 LMB doub 252 z n C8 C7 LMB sing 253 n n C9 C10 LMB sing 254 n n C16 C17 LMB sing 255 n n C14 C29 LMB sing 256 n n C7 C6 LMB doub 257 e n C6 C5 LMB sing 258 n n C10 C28 LMB sing 259 n n C5 C4 LMB sing 260 n n O3 C17 LMB doub 261 n n C17 C18 LMB sing 262 n n C25 C4 LMB sing 263 n n C2 C3 LMB sing 264 n n C2 C1 LMB sing 265 n n O1 C1 LMB doub 266 n n C4 C3 LMB sing 267 n n C1 O1' LMB sing 268 n n C31 C18 LMB sing 269 n n C18 C19 LMB sing 270 n n C33 C22 LMB sing 271 n n C19 C20 LMB sing 272 n n C19 O4 LMB sing 273 n n C20 C32 LMB sing 274 n n C20 C21 LMB sing 275 n n O6 C24 LMB doub 276 n n C22 C21 LMB sing 277 n n C22 C23 LMB doub 278 e n C24 C23 LMB sing 279 n n C24 O5 LMB sing 280 n n O5 H1 LMB sing 281 n n C23 H2 LMB sing 282 n n C33 H3 LMB sing 283 n n C33 H4 LMB sing 284 n n C33 H5 LMB sing 285 n n C21 H6 LMB sing 286 n n C21 H7 LMB sing 287 n n C20 H8 LMB sing 288 n n C32 H9 LMB sing 289 n n C32 H10 LMB sing 290 n n C32 H11 LMB sing 291 n n C19 H12 LMB sing 292 n n O4 H13 LMB sing 293 n n C18 H14 LMB sing 294 n n C31 H15 LMB sing 295 n n C31 H16 LMB sing 296 n n C31 H17 LMB sing 297 n n C16 H18 LMB sing 298 n n C30 H19 LMB sing 299 n n C30 H20 LMB sing 300 n n C30 H21 LMB sing 301 n n C15 H22 LMB sing 302 n n C29 H23 LMB sing 303 n n C29 H24 LMB sing 304 n n C29 H25 LMB sing 305 n n C13 H26 LMB sing 306 n n C12 H27 LMB sing 307 n n C11 H28 LMB sing 308 n n C11 H29 LMB sing 309 n n C10 H30 LMB sing 310 n n C28 H31 LMB sing 311 n n C28 H32 LMB sing 312 n n C28 H33 LMB sing 313 n n C9 H34 LMB sing 314 n n C26 H35 LMB sing 315 n n C26 H36 LMB sing 316 n n C27 H37 LMB sing 317 n n C27 H38 LMB sing 318 n n C27 H39 LMB sing 319 n n C7 H40 LMB sing 320 n n C6 H41 LMB sing 321 n n C5 H42 LMB sing 322 n n O2 H43 LMB sing 323 n n C4 H44 LMB sing 324 n n C25 H45 LMB sing 325 n n C25 H46 LMB sing 326 n n C25 H47 LMB sing 327 n n C3 H48 LMB sing 328 n n C3 H49 LMB sing 329 n n C2 H50 LMB sing 330 n n C2 H51 LMB sing 331 n n O1' H52 LMB sing 332 n n # _atom_sites.entry_id 6TVO _atom_sites.fract_transf_matrix[1][1] 0.008177 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006608 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004258 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GTP B 1 201 181 GTP GTP . D 4 MG B 1 202 182 MG MG . E 5 LMB A 1 1101 1032 LMB LMB . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O6 LMB . . . E 5 -53.395 -8.627 -50.301 1 134.2 ? O6 LMB 1101 A 1 HETATM 2 C C24 LMB . . . E 5 -53.944 -9.086 -51.308 1 133.91 ? C24 LMB 1101 A 1 HETATM 3 O O5 LMB . . . E 5 -54.552 -8.402 -52.137 1 136.52 ? O5 LMB 1101 A 1 HETATM 4 C C23 LMB . . . E 5 -53.87 -10.502 -51.529 1 129.57 ? C23 LMB 1101 A 1 HETATM 5 C C22 LMB . . . E 5 -52.907 -11.294 -51.08 1 125.44 ? C22 LMB 1101 A 1 HETATM 6 C C33 LMB . . . E 5 -52.16 -11.103 -49.79 1 125.51 ? C33 LMB 1101 A 1 HETATM 7 C C21 LMB . . . E 5 -52.481 -12.5 -51.882 1 121.5 ? C21 LMB 1101 A 1 HETATM 8 C C20 LMB . . . E 5 -52.592 -13.848 -51.151 1 120.15 ? C20 LMB 1101 A 1 HETATM 9 C C32 LMB . . . E 5 -51.879 -14.942 -51.93 1 117.46 ? C32 LMB 1101 A 1 HETATM 10 C C19 LMB . . . E 5 -54.062 -14.207 -50.856 1 126.79 ? C19 LMB 1101 A 1 HETATM 11 O O4 LMB . . . E 5 -54.632 -14.793 -52.025 1 132.19 ? O4 LMB 1101 A 1 HETATM 12 C C18 LMB . . . E 5 -54.287 -15.141 -49.659 1 126.31 ? C18 LMB 1101 A 1 HETATM 13 C C31 LMB . . . E 5 -55.734 -15.595 -49.546 1 126.74 ? C31 LMB 1101 A 1 HETATM 14 C C17 LMB . . . E 5 -53.884 -14.462 -48.361 1 125.08 ? C17 LMB 1101 A 1 HETATM 15 O O3 LMB . . . E 5 -54.176 -13.302 -48.15 1 126.27 ? O3 LMB 1101 A 1 HETATM 16 C C16 LMB . . . E 5 -53.108 -15.285 -47.346 1 122.51 ? C16 LMB 1101 A 1 HETATM 17 C C30 LMB . . . E 5 -52.703 -14.446 -46.147 1 123.99 ? C30 LMB 1101 A 1 HETATM 18 C C15 LMB . . . E 5 -51.884 -15.904 -47.98 1 122.7 ? C15 LMB 1101 A 1 HETATM 19 C C14 LMB . . . E 5 -51.701 -17.271 -48.033 1 124.1 ? C14 LMB 1101 A 1 HETATM 20 C C29 LMB . . . E 5 -52.733 -18.229 -47.623 1 122.81 ? C29 LMB 1101 A 1 HETATM 21 C C13 LMB . . . E 5 -50.435 -17.828 -48.512 1 126.05 ? C13 LMB 1101 A 1 HETATM 22 C C12 LMB . . . E 5 -50.197 -19.128 -48.659 1 122.8 ? C12 LMB 1101 A 1 HETATM 23 C C11 LMB . . . E 5 -48.89 -19.745 -49.066 1 120.11 ? C11 LMB 1101 A 1 HETATM 24 C C10 LMB . . . E 5 -48.947 -20.512 -50.393 1 115.91 ? C10 LMB 1101 A 1 HETATM 25 C C28 LMB . . . E 5 -49.327 -19.555 -51.528 1 115.65 ? C28 LMB 1101 A 1 HETATM 26 C C9 LMB . . . E 5 -47.63 -21.184 -50.674 1 114.81 ? C9 LMB 1101 A 1 HETATM 27 C C8 LMB . . . E 5 -47.37 -22.505 -50.877 1 117.93 ? C8 LMB 1101 A 1 HETATM 28 C C26 LMB . . . E 5 -45.972 -23.067 -50.99 1 120.44 ? C26 LMB 1101 A 1 HETATM 29 C C27 LMB . . . E 5 -44.892 -22.038 -50.81 1 123.76 ? C27 LMB 1101 A 1 HETATM 30 C C7 LMB . . . E 5 -48.468 -23.472 -51.001 1 123.63 ? C7 LMB 1101 A 1 HETATM 31 C C6 LMB . . . E 5 -48.305 -24.744 -51.334 1 125.77 ? C6 LMB 1101 A 1 HETATM 32 C C5 LMB . . . E 5 -49.378 -25.792 -51.325 1 128.26 ? C5 LMB 1101 A 1 HETATM 33 O O2 LMB . . . E 5 -49.143 -26.717 -50.275 1 131.84 ? O2 LMB 1101 A 1 HETATM 34 C C4 LMB . . . E 5 -49.513 -26.533 -52.661 1 127.16 ? C4 LMB 1101 A 1 HETATM 35 C C25 LMB . . . E 5 -48.149 -26.917 -53.214 1 125.34 ? C25 LMB 1101 A 1 HETATM 36 C C3 LMB . . . E 5 -50.417 -27.765 -52.51 1 133.49 ? C3 LMB 1101 A 1 HETATM 37 C C2 LMB . . . E 5 -51.851 -27.455 -52.136 1 132.23 ? C2 LMB 1101 A 1 HETATM 38 C C1 LMB . . . E 5 -52.707 -28.681 -51.864 1 133.09 ? C1 LMB 1101 A 1 HETATM 39 O O1' LMB . . . E 5 -53.908 -28.508 -51.577 1 134.95 ? O1' LMB 1101 A 1 HETATM 40 O O1 LMB . . . E 5 -52.17 -29.805 -51.94 1 132.01 ? O1 LMB 1101 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 40 #