data_6TVO # _model_server_result.job_id U0ATCAzm7fjaEru_Vc_bHw _model_server_result.datetime_utc '2024-11-26 19:03:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tvo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6TVO # _exptl.entry_id 6TVO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TVO _cell.length_a 122.29 _cell.length_b 151.33 _cell.length_c 234.843 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TVO _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B SG CYS 542 A CYS 528 1_555 E C3 LMB . A LMB 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? metalc ? metalc1 A OG1 THR 26 B THR 24 1_555 D MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc2 A OG1 THR 44 B THR 42 1_555 D MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc3 C O3G GTP . B GTP 201 1_555 D MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc4 C O1B GTP . B GTP 201 1_555 D MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 6TVO _atom_sites.fract_transf_matrix[1][1] 0.008177 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006608 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004258 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GTP B 1 201 181 GTP GTP . D 4 MG B 1 202 182 MG MG . E 5 LMB A 1 1101 1032 LMB LMB . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . C 3 -0.684 -30.907 -72.349 1 101.8 ? PG GTP 201 B 1 HETATM 2 O O1G GTP . . . C 3 0.748 -30.552 -72.031 1 101.57 ? O1G GTP 201 B 1 HETATM 3 O O2G GTP . . . C 3 -1.263 -30.058 -73.454 1 100.73 ? O2G GTP 201 B 1 HETATM 4 O O3G GTP . . . C 3 -0.88 -32.384 -72.586 1 101.99 ? O3G GTP 201 B 1 HETATM 5 O O3B GTP . . . C 3 -1.52 -30.558 -71.046 1 101.29 ? O3B GTP 201 B 1 HETATM 6 P PB GTP . . . C 3 -2.986 -31.124 -70.8 1 102.51 ? PB GTP 201 B 1 HETATM 7 O O1B GTP . . . C 3 -2.952 -32.611 -70.927 1 103.43 ? O1B GTP 201 B 1 HETATM 8 O O2B GTP . . . C 3 -3.948 -30.335 -71.625 1 111.77 ? O2B GTP 201 B 1 HETATM 9 O O3A GTP . . . C 3 -3.201 -30.746 -69.259 1 94.64 ? O3A GTP 201 B 1 HETATM 10 P PA GTP . . . C 3 -3.34 -31.636 -67.932 1 118.47 ? PA GTP 201 B 1 HETATM 11 O O1A GTP . . . C 3 -2.126 -32.497 -67.804 1 104.87 ? O1A GTP 201 B 1 HETATM 12 O O2A GTP . . . C 3 -4.678 -32.297 -67.937 1 98.23 ? O2A GTP 201 B 1 HETATM 13 O O5' GTP . . . C 3 -3.31 -30.502 -66.798 1 96.5 ? O5' GTP 201 B 1 HETATM 14 C C5' GTP . . . C 3 -4.511 -29.725 -66.56 1 98.33 ? C5' GTP 201 B 1 HETATM 15 C C4' GTP . . . C 3 -4.262 -28.752 -65.434 1 104.04 ? C4' GTP 201 B 1 HETATM 16 O O4' GTP . . . C 3 -5.451 -27.95 -65.229 1 102.08 ? O4' GTP 201 B 1 HETATM 17 C C3' GTP . . . C 3 -3.979 -29.371 -64.061 1 106.09 ? C3' GTP 201 B 1 HETATM 18 O O3' GTP . . . C 3 -3.234 -28.483 -63.237 1 100.59 ? O3' GTP 201 B 1 HETATM 19 C C2' GTP . . . C 3 -5.393 -29.593 -63.52 1 102.07 ? C2' GTP 201 B 1 HETATM 20 O O2' GTP . . . C 3 -5.44 -29.624 -62.11 1 107.88 ? O2' GTP 201 B 1 HETATM 21 C C1' GTP . . . C 3 -6.148 -28.391 -64.084 1 100.21 ? C1' GTP 201 B 1 HETATM 22 N N9 GTP . . . C 3 -7.517 -28.698 -64.482 1 101.87 ? N9 GTP 201 B 1 HETATM 23 C C8 GTP . . . C 3 -7.907 -29.635 -65.405 1 100.16 ? C8 GTP 201 B 1 HETATM 24 N N7 GTP . . . C 3 -9.206 -29.694 -65.566 1 96.21 ? N7 GTP 201 B 1 HETATM 25 C C5 GTP . . . C 3 -9.704 -28.735 -64.693 1 101.66 ? C5 GTP 201 B 1 HETATM 26 C C6 GTP . . . C 3 -11.044 -28.348 -64.434 1 107.96 ? C6 GTP 201 B 1 HETATM 27 O O6 GTP . . . C 3 -12.081 -28.79 -64.938 1 110.61 ? O6 GTP 201 B 1 HETATM 28 N N1 GTP . . . C 3 -11.118 -27.337 -63.479 1 107.95 ? N1 GTP 201 B 1 HETATM 29 C C2 GTP . . . C 3 -10.033 -26.774 -62.857 1 105.82 ? C2 GTP 201 B 1 HETATM 30 N N2 GTP . . . C 3 -10.308 -25.815 -61.967 1 105.97 ? N2 GTP 201 B 1 HETATM 31 N N3 GTP . . . C 3 -8.768 -27.129 -63.092 1 105.19 ? N3 GTP 201 B 1 HETATM 32 C C4 GTP . . . C 3 -8.673 -28.114 -64.02 1 102.54 ? C4 GTP 201 B 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 32 #