data_6TWX # _model_server_result.job_id K2tUN3C8ClbKIsNXep8b0w _model_server_result.datetime_utc '2024-11-04 20:36:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6twx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":901}' # _entry.id 6TWX # _exptl.entry_id 6TWX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TWX _cell.length_a 61.47 _cell.length_b 96.55 _cell.length_c 198.52 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TWX _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab (z,x,y)' _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,K,U 1 1 B,C,L,M,N,O,P,Q,R,S,T,V 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 L N N ? 4 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C GLU 7 C GLU 155 1_555 C N TPO 8 C TPO 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 C C TPO 8 C TPO 156 1_555 C N GLN 9 C GLN 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 D C TPO 8 D TPO 156 1_555 D N GLN 9 D GLN 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A O GLY 138 A GLY 589 1_555 I CA CA . A CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? metalc ? metalc2 A O VAL 139 A VAL 590 1_555 I CA CA . A CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc3 A O MET 206 A MET 657 1_555 H CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.025 ? metalc ? metalc4 A O GLY 208 A GLY 659 1_555 H CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc5 A OD2 ASP 250 A ASP 701 1_555 H CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc6 A OG SER 322 A SER 773 1_555 T CA CA . B CA 909 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc7 A OE2 GLU 335 A GLU 786 1_555 J CA CA . A CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.166 ? metalc ? metalc8 A O MET 366 A MET 817 1_555 K CA CA . A CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc9 A O GLY 368 A GLY 819 1_555 K CA CA . A CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc10 A O GLY 370 A GLY 821 1_555 K CA CA . A CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc11 A OD1 ASP 410 A ASP 861 1_555 K CA CA . A CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc12 A OD2 ASP 410 A ASP 861 1_555 K CA CA . A CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? metalc ? metalc13 K CA CA . A CA 907 3_444 B OG SER 322 B SER 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc14 B O GLY 138 B GLY 589 1_555 P CA CA . B CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc15 B O VAL 139 B VAL 590 1_555 P CA CA . B CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? metalc ? metalc16 B OE2 GLU 141 B GLU 592 1_555 P CA CA . B CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc17 B OE1 GLU 184 B GLU 635 1_555 Q CA CA . B CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.007 ? metalc ? metalc18 B OE2 GLU 184 B GLU 635 1_555 Q CA CA . B CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.091 ? metalc ? metalc19 B O GLY 208 B GLY 659 1_555 R CA CA . B CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc20 B OD1 ASP 250 B ASP 701 1_555 R CA CA . B CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.154 ? metalc ? metalc21 B OD2 ASP 250 B ASP 701 1_555 R CA CA . B CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc22 B O MET 366 B MET 817 1_555 T CA CA . B CA 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc23 B O GLY 368 B GLY 819 1_555 T CA CA . B CA 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc24 B O GLY 370 B GLY 821 1_555 T CA CA . B CA 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc25 B OD1 ASP 410 B ASP 861 1_555 T CA CA . B CA 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc26 B OD2 ASP 410 B ASP 861 1_555 T CA CA . B CA 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? metalc ? metalc27 S CA CA . B CA 908 1_555 V O HOH . B HOH 1034 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 6TWX _atom_sites.fract_transf_matrix[1][1] 0.016268 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010357 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005037 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 901 901 GOL GOL . F 4 CIT A 1 902 1001 CIT CIT . G 5 CA A 1 903 101 CA CA . H 5 CA A 1 904 102 CA CA . I 5 CA A 1 905 103 CA CA . J 5 CA A 1 906 104 CA CA . K 5 CA A 1 907 105 CA CA . L 4 CIT B 1 901 901 CIT CIT . M 3 GOL B 1 902 1001 GOL GOL . N 4 CIT B 1 903 1101 CIT CIT . O 5 CA B 1 904 106 CA CA . P 5 CA B 1 905 107 CA CA . Q 5 CA B 1 906 108 CA CA . R 5 CA B 1 907 109 CA CA . S 5 CA B 1 908 110 CA CA . T 5 CA B 1 909 111 CA CA . U 6 HOH A 1 1001 39 HOH HOH . U 6 HOH A 2 1002 97 HOH HOH . U 6 HOH A 3 1003 88 HOH HOH . U 6 HOH A 4 1004 52 HOH HOH . U 6 HOH A 5 1005 14 HOH HOH . U 6 HOH A 6 1006 133 HOH HOH . U 6 HOH A 7 1007 22 HOH HOH . U 6 HOH A 8 1008 35 HOH HOH . U 6 HOH A 9 1009 26 HOH HOH . U 6 HOH A 10 1010 32 HOH HOH . U 6 HOH A 11 1011 99 HOH HOH . U 6 HOH A 12 1012 127 HOH HOH . U 6 HOH A 13 1013 54 HOH HOH . U 6 HOH A 14 1014 5 HOH HOH . U 6 HOH A 15 1015 76 HOH HOH . U 6 HOH A 16 1016 8 HOH HOH . U 6 HOH A 17 1017 64 HOH HOH . U 6 HOH A 18 1018 11 HOH HOH . U 6 HOH A 19 1019 114 HOH HOH . U 6 HOH A 20 1020 3 HOH HOH . U 6 HOH A 21 1021 83 HOH HOH . U 6 HOH A 22 1022 94 HOH HOH . U 6 HOH A 23 1023 103 HOH HOH . U 6 HOH A 24 1024 13 HOH HOH . U 6 HOH A 25 1025 12 HOH HOH . U 6 HOH A 26 1026 1 HOH HOH . U 6 HOH A 27 1027 27 HOH HOH . U 6 HOH A 28 1028 53 HOH HOH . U 6 HOH A 29 1029 48 HOH HOH . U 6 HOH A 30 1030 34 HOH HOH . U 6 HOH A 31 1031 134 HOH HOH . U 6 HOH A 32 1032 121 HOH HOH . U 6 HOH A 33 1033 60 HOH HOH . U 6 HOH A 34 1034 6 HOH HOH . U 6 HOH A 35 1035 137 HOH HOH . U 6 HOH A 36 1036 146 HOH HOH . U 6 HOH A 37 1037 4 HOH HOH . U 6 HOH A 38 1038 7 HOH HOH . U 6 HOH A 39 1039 102 HOH HOH . U 6 HOH A 40 1040 129 HOH HOH . U 6 HOH A 41 1041 113 HOH HOH . U 6 HOH A 42 1042 47 HOH HOH . U 6 HOH A 43 1043 40 HOH HOH . U 6 HOH A 44 1044 70 HOH HOH . U 6 HOH A 45 1045 20 HOH HOH . U 6 HOH A 46 1046 57 HOH HOH . U 6 HOH A 47 1047 79 HOH HOH . U 6 HOH A 48 1048 90 HOH HOH . U 6 HOH A 49 1049 65 HOH HOH . U 6 HOH A 50 1050 138 HOH HOH . U 6 HOH A 51 1051 82 HOH HOH . U 6 HOH A 52 1052 21 HOH HOH . U 6 HOH A 53 1053 145 HOH HOH . U 6 HOH A 54 1054 86 HOH HOH . U 6 HOH A 55 1055 110 HOH HOH . U 6 HOH A 56 1056 115 HOH HOH . U 6 HOH A 57 1057 107 HOH HOH . U 6 HOH A 58 1058 123 HOH HOH . U 6 HOH A 59 1059 24 HOH HOH . U 6 HOH A 60 1060 46 HOH HOH . U 6 HOH A 61 1061 92 HOH HOH . U 6 HOH A 62 1062 120 HOH HOH . U 6 HOH A 63 1063 87 HOH HOH . U 6 HOH A 64 1064 126 HOH HOH . U 6 HOH A 65 1065 119 HOH HOH . U 6 HOH A 66 1066 18 HOH HOH . U 6 HOH A 67 1067 104 HOH HOH . U 6 HOH A 68 1068 17 HOH HOH . V 6 HOH B 1 1001 130 HOH HOH . V 6 HOH B 2 1002 55 HOH HOH . V 6 HOH B 3 1003 105 HOH HOH . V 6 HOH B 4 1004 62 HOH HOH . V 6 HOH B 5 1005 58 HOH HOH . V 6 HOH B 6 1006 140 HOH HOH . V 6 HOH B 7 1007 15 HOH HOH . V 6 HOH B 8 1008 68 HOH HOH . V 6 HOH B 9 1009 77 HOH HOH . V 6 HOH B 10 1010 118 HOH HOH . V 6 HOH B 11 1011 117 HOH HOH . V 6 HOH B 12 1012 143 HOH HOH . V 6 HOH B 13 1013 38 HOH HOH . V 6 HOH B 14 1014 49 HOH HOH . V 6 HOH B 15 1015 139 HOH HOH . V 6 HOH B 16 1016 100 HOH HOH . V 6 HOH B 17 1017 101 HOH HOH . V 6 HOH B 18 1018 125 HOH HOH . V 6 HOH B 19 1019 141 HOH HOH . V 6 HOH B 20 1020 80 HOH HOH . V 6 HOH B 21 1021 91 HOH HOH . V 6 HOH B 22 1022 31 HOH HOH . V 6 HOH B 23 1023 85 HOH HOH . V 6 HOH B 24 1024 67 HOH HOH . V 6 HOH B 25 1025 36 HOH HOH . V 6 HOH B 26 1026 71 HOH HOH . V 6 HOH B 27 1027 2 HOH HOH . V 6 HOH B 28 1028 30 HOH HOH . V 6 HOH B 29 1029 23 HOH HOH . V 6 HOH B 30 1030 56 HOH HOH . V 6 HOH B 31 1031 44 HOH HOH . V 6 HOH B 32 1032 128 HOH HOH . V 6 HOH B 33 1033 50 HOH HOH . V 6 HOH B 34 1034 63 HOH HOH . V 6 HOH B 35 1035 96 HOH HOH . V 6 HOH B 36 1036 45 HOH HOH . V 6 HOH B 37 1037 37 HOH HOH . V 6 HOH B 38 1038 41 HOH HOH . V 6 HOH B 39 1039 16 HOH HOH . V 6 HOH B 40 1040 142 HOH HOH . V 6 HOH B 41 1041 51 HOH HOH . V 6 HOH B 42 1042 42 HOH HOH . V 6 HOH B 43 1043 25 HOH HOH . V 6 HOH B 44 1044 116 HOH HOH . V 6 HOH B 45 1045 122 HOH HOH . V 6 HOH B 46 1046 111 HOH HOH . V 6 HOH B 47 1047 29 HOH HOH . V 6 HOH B 48 1048 98 HOH HOH . V 6 HOH B 49 1049 69 HOH HOH . V 6 HOH B 50 1050 106 HOH HOH . V 6 HOH B 51 1051 109 HOH HOH . V 6 HOH B 52 1052 9 HOH HOH . V 6 HOH B 53 1053 43 HOH HOH . V 6 HOH B 54 1054 59 HOH HOH . V 6 HOH B 55 1055 10 HOH HOH . V 6 HOH B 56 1056 33 HOH HOH . V 6 HOH B 57 1057 74 HOH HOH . V 6 HOH B 58 1058 19 HOH HOH . V 6 HOH B 59 1059 75 HOH HOH . V 6 HOH B 60 1060 136 HOH HOH . V 6 HOH B 61 1061 135 HOH HOH . V 6 HOH B 62 1062 66 HOH HOH . V 6 HOH B 63 1063 93 HOH HOH . V 6 HOH B 64 1064 132 HOH HOH . V 6 HOH B 65 1065 131 HOH HOH . V 6 HOH B 66 1066 144 HOH HOH . V 6 HOH B 67 1067 108 HOH HOH . V 6 HOH B 68 1068 28 HOH HOH . V 6 HOH B 69 1069 73 HOH HOH . V 6 HOH B 70 1070 84 HOH HOH . V 6 HOH B 71 1071 112 HOH HOH . V 6 HOH B 72 1072 89 HOH HOH . V 6 HOH B 73 1073 81 HOH HOH . V 6 HOH B 74 1074 72 HOH HOH . V 6 HOH B 75 1075 61 HOH HOH . V 6 HOH B 76 1076 95 HOH HOH . V 6 HOH B 77 1077 124 HOH HOH . V 6 HOH B 78 1078 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . L 4 14.414 9.01 -19.582 1 89.73 ? C1 CIT 901 B 1 HETATM 2 O O1 CIT . . . L 4 14.092 9.346 -20.745 1 87.95 ? O1 CIT 901 B 1 HETATM 3 O O2 CIT . . . L 4 14.303 9.829 -18.638 1 75.62 ? O2 CIT 901 B 1 HETATM 4 C C2 CIT . . . L 4 14.94 7.619 -19.333 1 97.42 ? C2 CIT 901 B 1 HETATM 5 C C3 CIT . . . L 4 16.428 7.678 -19.005 1 116.61 ? C3 CIT 901 B 1 HETATM 6 O O7 CIT . . . L 4 16.671 8.795 -18.108 1 113.56 ? O7 CIT 901 B 1 HETATM 7 C C4 CIT . . . L 4 16.886 6.396 -18.314 1 124.19 ? C4 CIT 901 B 1 HETATM 8 C C5 CIT . . . L 4 15.735 5.754 -17.571 1 127.54 ? C5 CIT 901 B 1 HETATM 9 O O3 CIT . . . L 4 15.223 4.699 -18.004 1 128.44 ? O3 CIT 901 B 1 HETATM 10 O O4 CIT . . . L 4 15.285 6.254 -16.517 1 129.58 ? O4 CIT 901 B 1 HETATM 11 C C6 CIT . . . L 4 17.25 7.9 -20.272 1 128.2 ? C6 CIT 901 B 1 HETATM 12 O O5 CIT . . . L 4 16.829 8.622 -21.204 1 131.28 ? O5 CIT 901 B 1 HETATM 13 O O6 CIT . . . L 4 18.37 7.354 -20.399 1 132.38 ? O6 CIT 901 B 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #