data_6TWY
#
_model_server_result.job_id            Rj7adMDJf5Be-TRkE_B_zg 
_model_server_result.datetime_utc      '2024-11-04 22:17:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6twy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":901}' 
#
_entry.id    6TWY 
#
_exptl.entry_id    6TWY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              192.124 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CITRIC ACID' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6TWY 
_cell.length_a            61.45 
_cell.length_b            96.38 
_cell.length_c            198.45 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6TWY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    'P 2 2ab (z,x,y)' 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,I,J,K,U 1 1 
B,C,L,M,N,O,P,Q,R,S,T,V 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 L N N 
? 4 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 138 A GLY 589 1_555 I CA CA . A CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? 
metalc ? metalc2 A O VAL 139 A VAL 590 1_555 I CA CA . A CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? 
metalc ? metalc3 A O LYS 176 A LYS 627 1_555 G CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.841 ? 
metalc ? metalc4 A OE2 GLU 184 A GLU 635 1_555 G CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.999 ? 
metalc ? metalc5 A O MET 206 A MET 657 1_555 H CA CA . A CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? 
metalc ? metalc6 A O GLY 208 A GLY 659 1_555 H CA CA . A CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? 
metalc ? metalc7 A OD2 ASP 250 A ASP 701 1_555 H CA CA . A CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? 
metalc ? metalc8 A OG SER 322 A SER 773 1_555 T CA CA . B CA 909 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? 
metalc ? metalc9 A O MET 366 A MET 817 1_555 K CA CA . A CA 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? 
metalc ? metalc10 A O GLY 368 A GLY 819 1_555 K CA CA . A CA 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? 
metalc ? metalc11 A O GLY 370 A GLY 821 1_555 K CA CA . A CA 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? 
metalc ? metalc12 A OD1 ASP 410 A ASP 861 1_555 K CA CA . A CA 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? 
metalc ? metalc13 A OD2 ASP 410 A ASP 861 1_555 K CA CA . A CA 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? 
metalc ? metalc14 J CA CA . A CA 907 1_555 U O HOH . A HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? 
metalc ? metalc15 J CA CA . A CA 907 1_555 U O HOH . A HOH 1054 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc16 K CA CA . A CA 908 3_444 B OG SER 322 B SER 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? 
metalc ? metalc17 B O GLY 138 B GLY 589 1_555 P CA CA . B CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? 
metalc ? metalc18 B O VAL 139 B VAL 590 1_555 P CA CA . B CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? 
metalc ? metalc19 B OE2 GLU 184 B GLU 635 1_555 Q CA CA . B CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.936 ? 
metalc ? metalc20 B O GLY 208 B GLY 659 1_555 R CA CA . B CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? 
metalc ? metalc21 B OD1 ASP 250 B ASP 701 1_555 R CA CA . B CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? 
metalc ? metalc22 B OD2 ASP 250 B ASP 701 1_555 R CA CA . B CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc23 B O MET 366 B MET 817 1_555 T CA CA . B CA 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? 
metalc ? metalc24 B O GLY 368 B GLY 819 1_555 T CA CA . B CA 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
metalc ? metalc25 B O GLY 370 B GLY 821 1_555 T CA CA . B CA 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? 
metalc ? metalc26 B OD1 ASP 410 B ASP 861 1_555 T CA CA . B CA 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? 
metalc ? metalc27 B OD2 ASP 410 B ASP 861 1_555 T CA CA . B CA 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? 
metalc ? metalc28 O CA CA . B CA 904 1_555 V O HOH . B HOH 1040 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
#
_chem_comp.formula           'C6 H8 O7' 
_chem_comp.formula_weight    192.124 
_chem_comp.id                CIT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CITRIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 CIT doub 70 n n 
C1 O2 CIT sing 71 n n 
C1 C2 CIT sing 72 n n 
O2 HO2 CIT sing 73 n n 
C2 C3 CIT sing 74 n n 
C2 H21 CIT sing 75 n n 
C2 H22 CIT sing 76 n n 
C3 O7 CIT sing 77 n n 
C3 C4 CIT sing 78 n n 
C3 C6 CIT sing 79 n n 
O7 HO7 CIT sing 80 n n 
C4 C5 CIT sing 81 n n 
C4 H41 CIT sing 82 n n 
C4 H42 CIT sing 83 n n 
C5 O3 CIT doub 84 n n 
C5 O4 CIT sing 85 n n 
O4 HO4 CIT sing 86 n n 
C6 O5 CIT doub 87 n n 
C6 O6 CIT sing 88 n n 
O6 HO6 CIT sing 89 n n 
#
_atom_sites.entry_id                     6TWY 
_atom_sites.fract_transf_matrix[1][1]    0.016273 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010376 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005039 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 GOL A 1 901 901 GOL GOL . 
E 4 CIT A 1 902 1001 CIT CIT . 
F 3 GOL A 1 903 1101 GOL GOL . 
G 5 CA A 1 904 101 CA CA . 
H 5 CA A 1 905 102 CA CA . 
I 5 CA A 1 906 103 CA CA . 
J 5 CA A 1 907 104 CA CA . 
K 5 CA A 1 908 105 CA CA . 
L 4 CIT B 1 901 901 CIT CIT . 
M 3 GOL B 1 902 1001 GOL GOL . 
N 4 CIT B 1 903 1101 CIT CIT . 
O 5 CA B 1 904 106 CA CA . 
P 5 CA B 1 905 107 CA CA . 
Q 5 CA B 1 906 108 CA CA . 
R 5 CA B 1 907 109 CA CA . 
S 5 CA B 1 908 110 CA CA . 
T 5 CA B 1 909 111 CA CA . 
U 6 HOH A 1 1001 77 HOH HOH . 
U 6 HOH A 2 1002 72 HOH HOH . 
U 6 HOH A 3 1003 65 HOH HOH . 
U 6 HOH A 4 1004 113 HOH HOH . 
U 6 HOH A 5 1005 63 HOH HOH . 
U 6 HOH A 6 1006 90 HOH HOH . 
U 6 HOH A 7 1007 69 HOH HOH . 
U 6 HOH A 8 1008 5 HOH HOH . 
U 6 HOH A 9 1009 51 HOH HOH . 
U 6 HOH A 10 1010 10 HOH HOH . 
U 6 HOH A 11 1011 12 HOH HOH . 
U 6 HOH A 12 1012 83 HOH HOH . 
U 6 HOH A 13 1013 27 HOH HOH . 
U 6 HOH A 14 1014 89 HOH HOH . 
U 6 HOH A 15 1015 11 HOH HOH . 
U 6 HOH A 16 1016 15 HOH HOH . 
U 6 HOH A 17 1017 112 HOH HOH . 
U 6 HOH A 18 1018 82 HOH HOH . 
U 6 HOH A 19 1019 32 HOH HOH . 
U 6 HOH A 20 1020 35 HOH HOH . 
U 6 HOH A 21 1021 41 HOH HOH . 
U 6 HOH A 22 1022 23 HOH HOH . 
U 6 HOH A 23 1023 81 HOH HOH . 
U 6 HOH A 24 1024 18 HOH HOH . 
U 6 HOH A 25 1025 66 HOH HOH . 
U 6 HOH A 26 1026 117 HOH HOH . 
U 6 HOH A 27 1027 21 HOH HOH . 
U 6 HOH A 28 1028 1 HOH HOH . 
U 6 HOH A 29 1029 102 HOH HOH . 
U 6 HOH A 30 1030 4 HOH HOH . 
U 6 HOH A 31 1031 62 HOH HOH . 
U 6 HOH A 32 1032 3 HOH HOH . 
U 6 HOH A 33 1033 29 HOH HOH . 
U 6 HOH A 34 1034 7 HOH HOH . 
U 6 HOH A 35 1035 86 HOH HOH . 
U 6 HOH A 36 1036 36 HOH HOH . 
U 6 HOH A 37 1037 52 HOH HOH . 
U 6 HOH A 38 1038 78 HOH HOH . 
U 6 HOH A 39 1039 13 HOH HOH . 
U 6 HOH A 40 1040 42 HOH HOH . 
U 6 HOH A 41 1041 59 HOH HOH . 
U 6 HOH A 42 1042 54 HOH HOH . 
U 6 HOH A 43 1043 47 HOH HOH . 
U 6 HOH A 44 1044 105 HOH HOH . 
U 6 HOH A 45 1045 38 HOH HOH . 
U 6 HOH A 46 1046 14 HOH HOH . 
U 6 HOH A 47 1047 6 HOH HOH . 
U 6 HOH A 48 1048 73 HOH HOH . 
U 6 HOH A 49 1049 107 HOH HOH . 
U 6 HOH A 50 1050 121 HOH HOH . 
U 6 HOH A 51 1051 45 HOH HOH . 
U 6 HOH A 52 1052 104 HOH HOH . 
U 6 HOH A 53 1053 50 HOH HOH . 
U 6 HOH A 54 1054 80 HOH HOH . 
U 6 HOH A 55 1055 120 HOH HOH . 
U 6 HOH A 56 1056 115 HOH HOH . 
U 6 HOH A 57 1057 85 HOH HOH . 
U 6 HOH A 58 1058 92 HOH HOH . 
V 6 HOH B 1 1001 87 HOH HOH . 
V 6 HOH B 2 1002 74 HOH HOH . 
V 6 HOH B 3 1003 95 HOH HOH . 
V 6 HOH B 4 1004 109 HOH HOH . 
V 6 HOH B 5 1005 103 HOH HOH . 
V 6 HOH B 6 1006 49 HOH HOH . 
V 6 HOH B 7 1007 71 HOH HOH . 
V 6 HOH B 8 1008 106 HOH HOH . 
V 6 HOH B 9 1009 100 HOH HOH . 
V 6 HOH B 10 1010 96 HOH HOH . 
V 6 HOH B 11 1011 111 HOH HOH . 
V 6 HOH B 12 1012 26 HOH HOH . 
V 6 HOH B 13 1013 16 HOH HOH . 
V 6 HOH B 14 1014 101 HOH HOH . 
V 6 HOH B 15 1015 67 HOH HOH . 
V 6 HOH B 16 1016 76 HOH HOH . 
V 6 HOH B 17 1017 33 HOH HOH . 
V 6 HOH B 18 1018 2 HOH HOH . 
V 6 HOH B 19 1019 25 HOH HOH . 
V 6 HOH B 20 1020 48 HOH HOH . 
V 6 HOH B 21 1021 22 HOH HOH . 
V 6 HOH B 22 1022 56 HOH HOH . 
V 6 HOH B 23 1023 58 HOH HOH . 
V 6 HOH B 24 1024 97 HOH HOH . 
V 6 HOH B 25 1025 79 HOH HOH . 
V 6 HOH B 26 1026 75 HOH HOH . 
V 6 HOH B 27 1027 20 HOH HOH . 
V 6 HOH B 28 1028 24 HOH HOH . 
V 6 HOH B 29 1029 84 HOH HOH . 
V 6 HOH B 30 1030 91 HOH HOH . 
V 6 HOH B 31 1031 57 HOH HOH . 
V 6 HOH B 32 1032 17 HOH HOH . 
V 6 HOH B 33 1033 9 HOH HOH . 
V 6 HOH B 34 1034 70 HOH HOH . 
V 6 HOH B 35 1035 28 HOH HOH . 
V 6 HOH B 36 1036 55 HOH HOH . 
V 6 HOH B 37 1037 37 HOH HOH . 
V 6 HOH B 38 1038 68 HOH HOH . 
V 6 HOH B 39 1039 94 HOH HOH . 
V 6 HOH B 40 1040 61 HOH HOH . 
V 6 HOH B 41 1041 93 HOH HOH . 
V 6 HOH B 42 1042 119 HOH HOH . 
V 6 HOH B 43 1043 60 HOH HOH . 
V 6 HOH B 44 1044 19 HOH HOH . 
V 6 HOH B 45 1045 31 HOH HOH . 
V 6 HOH B 46 1046 30 HOH HOH . 
V 6 HOH B 47 1047 99 HOH HOH . 
V 6 HOH B 48 1048 34 HOH HOH . 
V 6 HOH B 49 1049 64 HOH HOH . 
V 6 HOH B 50 1050 8 HOH HOH . 
V 6 HOH B 51 1051 43 HOH HOH . 
V 6 HOH B 52 1052 53 HOH HOH . 
V 6 HOH B 53 1053 108 HOH HOH . 
V 6 HOH B 54 1054 40 HOH HOH . 
V 6 HOH B 55 1055 44 HOH HOH . 
V 6 HOH B 56 1056 116 HOH HOH . 
V 6 HOH B 57 1057 118 HOH HOH . 
V 6 HOH B 58 1058 98 HOH HOH . 
V 6 HOH B 59 1059 110 HOH HOH . 
V 6 HOH B 60 1060 88 HOH HOH . 
V 6 HOH B 61 1061 39 HOH HOH . 
V 6 HOH B 62 1062 114 HOH HOH . 
V 6 HOH B 63 1063 46 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CIT . . . L 4 14.514 8.862 -19.728 1 111.08 ? C1 CIT 901 B 1 
HETATM 2 O O1 CIT . . . L 4 14.162 9.222 -20.874 1 108.51 ? O1 CIT 901 B 1 
HETATM 3 O O2 CIT . . . L 4 14.445 9.672 -18.774 1 99.48 ? O2 CIT 901 B 1 
HETATM 4 C C2 CIT . . . L 4 15.03 7.462 -19.509 1 121.2 ? C2 CIT 901 B 1 
HETATM 5 C C3 CIT . . . L 4 16.507 7.52 -19.129 1 139.03 ? C3 CIT 901 B 1 
HETATM 6 O O7 CIT . . . L 4 16.691 8.592 -18.168 1 141.7 ? O7 CIT 901 B 1 
HETATM 7 C C4 CIT . . . L 4 16.963 6.211 -18.487 1 145.03 ? C4 CIT 901 B 1 
HETATM 8 C C5 CIT . . . L 4 15.827 5.575 -17.718 1 148.01 ? C5 CIT 901 B 1 
HETATM 9 O O3 CIT . . . L 4 15.246 4.568 -18.176 1 148.35 ? O3 CIT 901 B 1 
HETATM 10 O O4 CIT . . . L 4 15.456 6.035 -16.615 1 150.14 ? O4 CIT 901 B 1 
HETATM 11 C C6 CIT . . . L 4 17.365 7.828 -20.355 1 145.71 ? C6 CIT 901 B 1 
HETATM 12 O O5 CIT . . . L 4 16.956 8.585 -21.265 1 147.17 ? O5 CIT 901 B 1 
HETATM 13 O O6 CIT . . . L 4 18.504 7.319 -20.474 1 146.73 ? O6 CIT 901 B 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           13 
#