data_6TWY # _model_server_result.job_id dquykQS3XdLByPBpbOY_7g _model_server_result.datetime_utc '2024-11-04 22:17:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6twy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":908}' # _entry.id 6TWY # _exptl.entry_id 6TWY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TWY _cell.length_a 61.45 _cell.length_b 96.38 _cell.length_c 198.45 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TWY _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab (z,x,y)' _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,K,U 1 1 B,C,L,M,N,O,P,Q,R,S,T,V 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 O N N ? 5 P N N ? 5 Q N N ? 5 R N N ? 5 S N N ? 5 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 138 A GLY 589 1_555 I CA CA . A CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc2 A O VAL 139 A VAL 590 1_555 I CA CA . A CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc3 A O LYS 176 A LYS 627 1_555 G CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.841 ? metalc ? metalc4 A OE2 GLU 184 A GLU 635 1_555 G CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.999 ? metalc ? metalc5 A O MET 206 A MET 657 1_555 H CA CA . A CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc6 A O GLY 208 A GLY 659 1_555 H CA CA . A CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc7 A OD2 ASP 250 A ASP 701 1_555 H CA CA . A CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc8 A OG SER 322 A SER 773 1_555 T CA CA . B CA 909 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc9 A O MET 366 A MET 817 1_555 K CA CA . A CA 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc10 A O GLY 368 A GLY 819 1_555 K CA CA . A CA 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc11 A O GLY 370 A GLY 821 1_555 K CA CA . A CA 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc12 A OD1 ASP 410 A ASP 861 1_555 K CA CA . A CA 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc13 A OD2 ASP 410 A ASP 861 1_555 K CA CA . A CA 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? metalc ? metalc14 J CA CA . A CA 907 1_555 U O HOH . A HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc15 J CA CA . A CA 907 1_555 U O HOH . A HOH 1054 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc16 K CA CA . A CA 908 3_444 B OG SER 322 B SER 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc17 B O GLY 138 B GLY 589 1_555 P CA CA . B CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc18 B O VAL 139 B VAL 590 1_555 P CA CA . B CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc19 B OE2 GLU 184 B GLU 635 1_555 Q CA CA . B CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.936 ? metalc ? metalc20 B O GLY 208 B GLY 659 1_555 R CA CA . B CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc21 B OD1 ASP 250 B ASP 701 1_555 R CA CA . B CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? metalc ? metalc22 B OD2 ASP 250 B ASP 701 1_555 R CA CA . B CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc23 B O MET 366 B MET 817 1_555 T CA CA . B CA 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc24 B O GLY 368 B GLY 819 1_555 T CA CA . B CA 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc25 B O GLY 370 B GLY 821 1_555 T CA CA . B CA 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc26 B OD1 ASP 410 B ASP 861 1_555 T CA CA . B CA 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc27 B OD2 ASP 410 B ASP 861 1_555 T CA CA . B CA 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? metalc ? metalc28 O CA CA . B CA 904 1_555 V O HOH . B HOH 1040 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6TWY _atom_sites.fract_transf_matrix[1][1] 0.016273 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010376 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005039 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 GOL A 1 901 901 GOL GOL . E 4 CIT A 1 902 1001 CIT CIT . F 3 GOL A 1 903 1101 GOL GOL . G 5 CA A 1 904 101 CA CA . H 5 CA A 1 905 102 CA CA . I 5 CA A 1 906 103 CA CA . J 5 CA A 1 907 104 CA CA . K 5 CA A 1 908 105 CA CA . L 4 CIT B 1 901 901 CIT CIT . M 3 GOL B 1 902 1001 GOL GOL . N 4 CIT B 1 903 1101 CIT CIT . O 5 CA B 1 904 106 CA CA . P 5 CA B 1 905 107 CA CA . Q 5 CA B 1 906 108 CA CA . R 5 CA B 1 907 109 CA CA . S 5 CA B 1 908 110 CA CA . T 5 CA B 1 909 111 CA CA . U 6 HOH A 1 1001 77 HOH HOH . U 6 HOH A 2 1002 72 HOH HOH . U 6 HOH A 3 1003 65 HOH HOH . U 6 HOH A 4 1004 113 HOH HOH . U 6 HOH A 5 1005 63 HOH HOH . U 6 HOH A 6 1006 90 HOH HOH . U 6 HOH A 7 1007 69 HOH HOH . U 6 HOH A 8 1008 5 HOH HOH . U 6 HOH A 9 1009 51 HOH HOH . U 6 HOH A 10 1010 10 HOH HOH . U 6 HOH A 11 1011 12 HOH HOH . U 6 HOH A 12 1012 83 HOH HOH . U 6 HOH A 13 1013 27 HOH HOH . U 6 HOH A 14 1014 89 HOH HOH . U 6 HOH A 15 1015 11 HOH HOH . U 6 HOH A 16 1016 15 HOH HOH . U 6 HOH A 17 1017 112 HOH HOH . U 6 HOH A 18 1018 82 HOH HOH . U 6 HOH A 19 1019 32 HOH HOH . U 6 HOH A 20 1020 35 HOH HOH . U 6 HOH A 21 1021 41 HOH HOH . U 6 HOH A 22 1022 23 HOH HOH . U 6 HOH A 23 1023 81 HOH HOH . U 6 HOH A 24 1024 18 HOH HOH . U 6 HOH A 25 1025 66 HOH HOH . U 6 HOH A 26 1026 117 HOH HOH . U 6 HOH A 27 1027 21 HOH HOH . U 6 HOH A 28 1028 1 HOH HOH . U 6 HOH A 29 1029 102 HOH HOH . U 6 HOH A 30 1030 4 HOH HOH . U 6 HOH A 31 1031 62 HOH HOH . U 6 HOH A 32 1032 3 HOH HOH . U 6 HOH A 33 1033 29 HOH HOH . U 6 HOH A 34 1034 7 HOH HOH . U 6 HOH A 35 1035 86 HOH HOH . U 6 HOH A 36 1036 36 HOH HOH . U 6 HOH A 37 1037 52 HOH HOH . U 6 HOH A 38 1038 78 HOH HOH . U 6 HOH A 39 1039 13 HOH HOH . U 6 HOH A 40 1040 42 HOH HOH . U 6 HOH A 41 1041 59 HOH HOH . U 6 HOH A 42 1042 54 HOH HOH . U 6 HOH A 43 1043 47 HOH HOH . U 6 HOH A 44 1044 105 HOH HOH . U 6 HOH A 45 1045 38 HOH HOH . U 6 HOH A 46 1046 14 HOH HOH . U 6 HOH A 47 1047 6 HOH HOH . U 6 HOH A 48 1048 73 HOH HOH . U 6 HOH A 49 1049 107 HOH HOH . U 6 HOH A 50 1050 121 HOH HOH . U 6 HOH A 51 1051 45 HOH HOH . U 6 HOH A 52 1052 104 HOH HOH . U 6 HOH A 53 1053 50 HOH HOH . U 6 HOH A 54 1054 80 HOH HOH . U 6 HOH A 55 1055 120 HOH HOH . U 6 HOH A 56 1056 115 HOH HOH . U 6 HOH A 57 1057 85 HOH HOH . U 6 HOH A 58 1058 92 HOH HOH . V 6 HOH B 1 1001 87 HOH HOH . V 6 HOH B 2 1002 74 HOH HOH . V 6 HOH B 3 1003 95 HOH HOH . V 6 HOH B 4 1004 109 HOH HOH . V 6 HOH B 5 1005 103 HOH HOH . V 6 HOH B 6 1006 49 HOH HOH . V 6 HOH B 7 1007 71 HOH HOH . V 6 HOH B 8 1008 106 HOH HOH . V 6 HOH B 9 1009 100 HOH HOH . V 6 HOH B 10 1010 96 HOH HOH . V 6 HOH B 11 1011 111 HOH HOH . V 6 HOH B 12 1012 26 HOH HOH . V 6 HOH B 13 1013 16 HOH HOH . V 6 HOH B 14 1014 101 HOH HOH . V 6 HOH B 15 1015 67 HOH HOH . V 6 HOH B 16 1016 76 HOH HOH . V 6 HOH B 17 1017 33 HOH HOH . V 6 HOH B 18 1018 2 HOH HOH . V 6 HOH B 19 1019 25 HOH HOH . V 6 HOH B 20 1020 48 HOH HOH . V 6 HOH B 21 1021 22 HOH HOH . V 6 HOH B 22 1022 56 HOH HOH . V 6 HOH B 23 1023 58 HOH HOH . V 6 HOH B 24 1024 97 HOH HOH . V 6 HOH B 25 1025 79 HOH HOH . V 6 HOH B 26 1026 75 HOH HOH . V 6 HOH B 27 1027 20 HOH HOH . V 6 HOH B 28 1028 24 HOH HOH . V 6 HOH B 29 1029 84 HOH HOH . V 6 HOH B 30 1030 91 HOH HOH . V 6 HOH B 31 1031 57 HOH HOH . V 6 HOH B 32 1032 17 HOH HOH . V 6 HOH B 33 1033 9 HOH HOH . V 6 HOH B 34 1034 70 HOH HOH . V 6 HOH B 35 1035 28 HOH HOH . V 6 HOH B 36 1036 55 HOH HOH . V 6 HOH B 37 1037 37 HOH HOH . V 6 HOH B 38 1038 68 HOH HOH . V 6 HOH B 39 1039 94 HOH HOH . V 6 HOH B 40 1040 61 HOH HOH . V 6 HOH B 41 1041 93 HOH HOH . V 6 HOH B 42 1042 119 HOH HOH . V 6 HOH B 43 1043 60 HOH HOH . V 6 HOH B 44 1044 19 HOH HOH . V 6 HOH B 45 1045 31 HOH HOH . V 6 HOH B 46 1046 30 HOH HOH . V 6 HOH B 47 1047 99 HOH HOH . V 6 HOH B 48 1048 34 HOH HOH . V 6 HOH B 49 1049 64 HOH HOH . V 6 HOH B 50 1050 8 HOH HOH . V 6 HOH B 51 1051 43 HOH HOH . V 6 HOH B 52 1052 53 HOH HOH . V 6 HOH B 53 1053 108 HOH HOH . V 6 HOH B 54 1054 40 HOH HOH . V 6 HOH B 55 1055 44 HOH HOH . V 6 HOH B 56 1056 116 HOH HOH . V 6 HOH B 57 1057 118 HOH HOH . V 6 HOH B 58 1058 98 HOH HOH . V 6 HOH B 59 1059 110 HOH HOH . V 6 HOH B 60 1060 88 HOH HOH . V 6 HOH B 61 1061 39 HOH HOH . V 6 HOH B 62 1062 114 HOH HOH . V 6 HOH B 63 1063 46 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id S _atom_site.label_entity_id 5 _atom_site.Cartn_x -0.665 _atom_site.Cartn_y 33.729 _atom_site.Cartn_z -54.374 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 118.23 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 908 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #