data_6TWZ # _model_server_result.job_id hZ6zLeQ0HQsyFZZtq57lCQ _model_server_result.datetime_utc '2024-11-21 18:04:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6twz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":302}' # _entry.id 6TWZ # _exptl.entry_id 6TWZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.334 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.289 _cell.angle_gamma 90 _cell.entry_id 6TWZ _cell.length_a 178.58 _cell.length_b 107.42 _cell.length_c 79.6 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TWZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,H,I,J 1 1 C,D,F,G,K,L,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E C GLU 7 E GLU 155 1_555 E N TPO 8 E TPO 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 E C TPO 8 E TPO 156 1_555 E N GLN 9 E GLN 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 F C GLU 7 F GLU 155 1_555 F N TPO 8 F TPO 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 F C TPO 8 F TPO 156 1_555 F N GLN 9 F GLN 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 G C GLU 7 G GLU 155 1_555 G N TPO 8 G TPO 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 G C TPO 8 G TPO 156 1_555 G N GLN 9 G GLN 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 H C GLU 7 D000 GLU 155 1_555 H N TPO 8 D000 TPO 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 H C TPO 8 D000 TPO 156 1_555 H N GLN 9 D000 GLN 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C11 H26 N2 O6' _chem_comp.formula_weight 282.334 _chem_comp.id B3P _chem_comp.mon_nstd_flag . _chem_comp.name 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 B3P sing 70 n n C1 C3 B3P sing 71 n n C1 H11 B3P sing 72 n n C1 H12 B3P sing 73 n n C2 N2 B3P sing 74 n n C2 H21 B3P sing 75 n n C2 H22 B3P sing 76 n n C3 N1 B3P sing 77 n n C3 H31 B3P sing 78 n n C3 H32 B3P sing 79 n n N1 C4 B3P sing 80 n n N1 HN1 B3P sing 81 n n C4 C5 B3P sing 82 n n C4 C6 B3P sing 83 n n C4 C7 B3P sing 84 n n C5 O4 B3P sing 85 n n C5 H51 B3P sing 86 n n C5 H52 B3P sing 87 n n C6 O5 B3P sing 88 n n C6 H61 B3P sing 89 n n C6 H62 B3P sing 90 n n C7 O6 B3P sing 91 n n C7 H71 B3P sing 92 n n C7 H72 B3P sing 93 n n N2 C8 B3P sing 94 n n N2 HN2 B3P sing 95 n n C8 C9 B3P sing 96 n n C8 C10 B3P sing 97 n n C8 C11 B3P sing 98 n n C9 O1 B3P sing 99 n n C9 H91 B3P sing 100 n n C9 H92 B3P sing 101 n n C10 O2 B3P sing 102 n n C10 H101 B3P sing 103 n n C10 H102 B3P sing 104 n n C11 O3 B3P sing 105 n n C11 H111 B3P sing 106 n n C11 H112 B3P sing 107 n n O1 HO1 B3P sing 108 n n O2 HO2 B3P sing 109 n n O3 HO3 B3P sing 110 n n O4 HO4 B3P sing 111 n n O5 HO5 B3P sing 112 n n O6 HO6 B3P sing 113 n n # _atom_sites.entry_id 6TWZ _atom_sites.fract_transf_matrix[1][1] 0.0056 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00196 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009309 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01331 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 TAR A 1 301 301 TAR TAR . J 3 TAR B 1 301 301 TAR TAR . K 3 TAR C 1 301 301 TAR TAR . L 3 TAR D 1 301 301 TAR TAR . M 4 B3P D 1 302 301 B3P B3P . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 B3P . . . M 4 -0.12 25.806 -0.047 0.5 95.37 ? C1 B3P 302 D 1 HETATM 2 C C2 B3P . . . M 4 0.108 25.566 1.446 0.5 94.31 ? C2 B3P 302 D 1 HETATM 3 C C3 B3P . . . M 4 0.883 25.065 -0.928 0.5 95.06 ? C3 B3P 302 D 1 HETATM 4 N N1 B3P . . . M 4 0.349 24.9 -2.269 0.5 93.86 ? N1 B3P 302 D 1 HETATM 5 C C4 B3P . . . M 4 1.389 25.12 -3.261 0.5 94.19 ? C4 B3P 302 D 1 HETATM 6 C C5 B3P . . . M 4 0.821 24.848 -4.651 0.5 89.12 ? C5 B3P 302 D 1 HETATM 7 C C6 B3P . . . M 4 2.563 24.175 -3.007 0.5 96.15 ? C6 B3P 302 D 1 HETATM 8 C C7 B3P . . . M 4 1.871 26.568 -3.183 0.5 99.39 ? C7 B3P 302 D 1 HETATM 9 N N2 B3P . . . M 4 -0.782 24.523 1.93 0.5 95.15 ? N2 B3P 302 D 1 HETATM 10 C C8 B3P . . . M 4 -1.576 24.972 3.065 0.5 95.67 ? C8 B3P 302 D 1 HETATM 11 C C9 B3P . . . M 4 -0.716 24.947 4.327 0.5 89.64 ? C9 B3P 302 D 1 HETATM 12 C C10 B3P . . . M 4 -2.758 24.023 3.249 0.5 96.12 ? C10 B3P 302 D 1 HETATM 13 C C11 B3P . . . M 4 -2.112 26.387 2.843 0.5 99.37 ? C11 B3P 302 D 1 HETATM 14 O O1 B3P . . . M 4 -1.488 25.423 5.394 0.5 87.19 ? O1 B3P 302 D 1 HETATM 15 O O2 B3P . . . M 4 -3.752 24.686 3.981 0.5 95.02 ? O2 B3P 302 D 1 HETATM 16 O O3 B3P . . . M 4 -2.668 26.846 4.045 0.5 99.39 ? O3 B3P 302 D 1 HETATM 17 O O4 B3P . . . M 4 1.727 25.338 -5.6 0.5 86.76 ? O4 B3P 302 D 1 HETATM 18 O O5 B3P . . . M 4 3.722 24.739 -3.555 0.5 94.75 ? O5 B3P 302 D 1 HETATM 19 O O6 B3P . . . M 4 2.85 26.765 -4.166 0.5 99.06 ? O6 B3P 302 D 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 19 #