data_6TX3
#
_model_server_result.job_id            6gVJ9x9TB612JP0alkyulQ 
_model_server_result.datetime_utc      '2024-11-04 18:45:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6tx3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1001}' 
#
_entry.id    6TX3 
#
_exptl.entry_id    6TX3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              537.528 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[4-[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]carbonylpiperazin-1-yl]-N-(1-oxidanylidene-2,3-dihydroisoindol-4-yl)ethanamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6TX3 
_cell.length_a            115.622 
_cell.length_b            115.622 
_cell.length_c            143.607 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6TX3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C24 H27 N9 O6' 
_chem_comp.formula_weight    537.528 
_chem_comp.id                UHB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[4-[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]carbonylpiperazin-1-yl]-N-(1-oxidanylidene-2,3-dihydroisoindol-4-yl)ethanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 C02 UHB doub 356 n y 
C01 C06 UHB sing 357 n y 
C02 C03 UHB sing 358 n y 
C03 C04 UHB doub 359 n y 
C04 C05 UHB sing 360 n y 
C04 N11 UHB sing 361 n n 
C05 C06 UHB doub 362 n y 
C05 C08 UHB sing 363 n n 
C06 C07 UHB sing 364 n n 
C07 N09 UHB sing 365 n n 
C07 O10 UHB doub 366 n n 
C08 N09 UHB sing 367 n n 
N11 C12 UHB sing 368 n n 
C12 O13 UHB doub 369 n n 
C12 C14 UHB sing 370 n n 
C14 N15 UHB sing 371 n n 
N15 C16 UHB sing 372 n n 
N15 C20 UHB sing 373 n n 
C16 C17 UHB sing 374 n n 
C17 N18 UHB sing 375 n n 
N18 C19 UHB sing 376 n n 
N18 C21 UHB sing 377 n n 
C19 C20 UHB sing 378 n n 
C21 C22 UHB sing 379 n n 
C21 O27 UHB doub 380 n n 
C22 C23 UHB sing 381 n n 
C22 O26 UHB sing 382 n n 
C23 C24 UHB sing 383 n n 
C23 O28 UHB sing 384 n n 
C24 C25 UHB sing 385 n n 
C24 O29 UHB sing 386 n n 
C25 O26 UHB sing 387 n n 
C25 N30 UHB sing 388 n n 
N30 C32 UHB sing 389 n y 
N30 C33 UHB sing 390 n y 
C31 C32 UHB doub 391 n y 
C31 N34 UHB sing 392 n y 
C31 C38 UHB sing 393 n y 
C32 N37 UHB sing 394 n y 
C33 N34 UHB doub 395 n y 
N35 C36 UHB sing 396 n y 
N35 C38 UHB doub 397 n y 
C36 N37 UHB doub 398 n y 
C38 N39 UHB sing 399 n n 
C01 H01 UHB sing 400 n n 
C02 H02 UHB sing 401 n n 
C03 H03 UHB sing 402 n n 
C08 H081 UHB sing 403 n n 
C08 H082 UHB sing 404 n n 
N09 HN09 UHB sing 405 n n 
C14 H14 UHB sing 406 n n 
C14 H14A UHB sing 407 n n 
C16 H16 UHB sing 408 n n 
C16 H16A UHB sing 409 n n 
C17 H17 UHB sing 410 n n 
C17 H17A UHB sing 411 n n 
C19 H19 UHB sing 412 n n 
C19 H19A UHB sing 413 n n 
C20 H20 UHB sing 414 n n 
C20 H20A UHB sing 415 n n 
C22 H22 UHB sing 416 n n 
C23 H23 UHB sing 417 n n 
C24 H24 UHB sing 418 n n 
C25 H25 UHB sing 419 n n 
O28 HO28 UHB sing 420 n n 
O29 HO29 UHB sing 421 n n 
C33 H33 UHB sing 422 n n 
C36 H36 UHB sing 423 n n 
N39 HN39 UHB sing 424 n n 
N39 HN3A UHB sing 425 n n 
N11 HN11 UHB sing 426 n n 
#
_atom_sites.entry_id                     6TX3 
_atom_sites.fract_transf_matrix[1][1]    0.008649 
_atom_sites.fract_transf_matrix[1][2]    0.004993 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009987 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006963 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          C 
_pdbx_nonpoly_scheme.entity_id        3 
_pdbx_nonpoly_scheme.mon_id           UHB 
_pdbx_nonpoly_scheme.pdb_strand_id    B 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      1001 
_pdbx_nonpoly_scheme.auth_seq_num     1001 
_pdbx_nonpoly_scheme.pdb_mon_id       UHB 
_pdbx_nonpoly_scheme.auth_mon_id      UHB 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 UHB . . . C 3 -47.725 32.937 -33.552 1 126.16 ? C01 UHB 1001 B 1 
HETATM 2 C C02 UHB . . . C 3 -46.759 31.955 -33.756 1 131.92 ? C02 UHB 1001 B 1 
HETATM 3 C C03 UHB . . . C 3 -45.414 32.279 -33.639 1 133.17 ? C03 UHB 1001 B 1 
HETATM 4 C C04 UHB . . . C 3 -45.017 33.573 -33.341 1 133.28 ? C04 UHB 1001 B 1 
HETATM 5 C C05 UHB . . . C 3 -45.999 34.563 -33.123 1 127.97 ? C05 UHB 1001 B 1 
HETATM 6 C C06 UHB . . . C 3 -47.337 34.234 -33.235 1 126.47 ? C06 UHB 1001 B 1 
HETATM 7 C C07 UHB . . . C 3 -48.164 35.5 -32.967 1 128.28 ? C07 UHB 1001 B 1 
HETATM 8 C C08 UHB . . . C 3 -45.916 36.064 -32.773 1 128.59 ? C08 UHB 1001 B 1 
HETATM 9 N N09 UHB . . . C 3 -47.247 36.584 -32.689 1 129.8 ? N09 UHB 1001 B 1 
HETATM 10 O O10 UHB . . . C 3 -49.355 35.58 -32.983 1 127.42 ? O10 UHB 1001 B 1 
HETATM 11 N N11 UHB . . . C 3 -43.591 33.858 -33.179 1 137.2 ? N11 UHB 1001 B 1 
HETATM 12 C C12 UHB . . . C 3 -42.745 34.933 -33.757 1 137.65 ? C12 UHB 1001 B 1 
HETATM 13 O O13 UHB . . . C 3 -43.257 35.758 -34.434 1 143.93 ? O13 UHB 1001 B 1 
HETATM 14 C C14 UHB . . . C 3 -41.239 34.958 -33.365 1 137.35 ? C14 UHB 1001 B 1 
HETATM 15 N N15 UHB . . . C 3 -40.596 36.274 -33.41 1 145.84 ? N15 UHB 1001 B 1 
HETATM 16 C C16 UHB . . . C 3 -41.354 37.29 -32.727 1 142.22 ? C16 UHB 1001 B 1 
HETATM 17 C C17 UHB . . . C 3 -40.619 38.633 -32.786 1 147.91 ? C17 UHB 1001 B 1 
HETATM 18 N N18 UHB . . . C 3 -40.413 39.003 -34.203 1 153.73 ? N18 UHB 1001 B 1 
HETATM 19 C C19 UHB . . . C 3 -39.597 37.983 -34.866 1 154.73 ? C19 UHB 1001 B 1 
HETATM 20 C C20 UHB . . . C 3 -40.332 36.641 -34.785 1 151.01 ? C20 UHB 1001 B 1 
HETATM 21 C C21 UHB . . . C 3 -41.042 40.193 -34.835 1 154.09 ? C21 UHB 1001 B 1 
HETATM 22 C C22 UHB . . . C 3 -41.902 41.036 -33.864 1 150.93 ? C22 UHB 1001 B 1 
HETATM 23 C C23 UHB . . . C 3 -43.312 40.348 -33.887 1 151.42 ? C23 UHB 1001 B 1 
HETATM 24 C C24 UHB . . . C 3 -44.189 41.274 -34.689 1 148.97 ? C24 UHB 1001 B 1 
HETATM 25 C C25 UHB . . . C 3 -43.549 42.45 -34.755 1 153.07 ? C25 UHB 1001 B 1 
HETATM 26 O O26 UHB . . . C 3 -42.032 42.243 -34.285 1 154.14 ? O26 UHB 1001 B 1 
HETATM 27 O O27 UHB . . . C 3 -40.903 40.476 -35.991 1 156.9 ? O27 UHB 1001 B 1 
HETATM 28 O O28 UHB . . . C 3 -43.781 40.146 -32.593 1 155.29 ? O28 UHB 1001 B 1 
HETATM 29 O O29 UHB . . . C 3 -45.505 41.453 -34.008 1 146.53 ? O29 UHB 1001 B 1 
HETATM 30 N N30 UHB . . . C 3 -43.531 42.954 -36.116 1 160.01 ? N30 UHB 1001 B 1 
HETATM 31 C C31 UHB . . . C 3 -43.779 44.659 -37.461 1 164.88 ? C31 UHB 1001 B 1 
HETATM 32 C C32 UHB . . . C 3 -43.82 44.279 -36.168 1 163.57 ? C32 UHB 1001 B 1 
HETATM 33 C C33 UHB . . . C 3 -43.292 42.517 -37.365 1 158.44 ? C33 UHB 1001 B 1 
HETATM 34 N N34 UHB . . . C 3 -43.45 43.568 -38.195 1 161.58 ? N34 UHB 1001 B 1 
HETATM 35 N N35 UHB . . . C 3 -44.35 46.854 -36.84 1 165.77 ? N35 UHB 1001 B 1 
HETATM 36 C C36 UHB . . . C 3 -44.394 46.465 -35.522 1 157.69 ? C36 UHB 1001 B 1 
HETATM 37 N N37 UHB . . . C 3 -44.13 45.171 -35.194 1 157.17 ? N37 UHB 1001 B 1 
HETATM 38 C C38 UHB . . . C 3 -44.054 45.99 -37.798 1 164.05 ? C38 UHB 1001 B 1 
HETATM 39 N N39 UHB . . . C 3 -44.177 46.985 -38.852 1 160.53 ? N39 UHB 1001 B 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           39 
#